19  structures 0  species 0  sequences

Clan: U6 (CL00009)

Summary

U6 clan

The U6 clan contains the RNA families U6 and U6atac. Homology between these families has been established in the published literature [1-4].

This clan contains 2 families and the total number of sequence regions in the clan is 69,375.

Literature references

  1. Shukla GC, Cole AJ, Dietrich RC, Padgett RA, Nucleic Acids Res. 2002;30:4650-4657.: Domains of human U4atac snRNA required for U12-dependent splicing in vivo. 12409455
  2. Tarn WY, Steitz JA, Science. 1996;273:1824-32.: Highly diverged U4 and U6 small nuclear RNAs required for splicing rare AT-AC introns. 8791582
  3. Zwieb C, Nucleic Acids Res. 1996;24:76-9.: The uRNA database. 8594606
  4. Zwieb C, Nucleic Acids Res 1997;25:102-103.: The uRNA database. 9016512

Members

This clan contains the following 2 member families:

U6 U6atac

External database links

Structures

For those sequences which have a structure in the Protein DataBank, we generate a mapping between EMBL, PDB and Rfam coordinate systems. The table below shows the mapping between the Rfam families in this clan, the corresponding EMBL entries, and the region of the three-dimensional structures that are available for that sequence.

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Secondary structures

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

Alignments

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family Num. regions Alignment
U6atac (RF00619) 2,858 (4.1%) View
U6 (RF00026) 66,517 (95.9%) View