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Clan: Glm (CL00011)

Summary

Glm clan

The Glm clan contains the RNA families GlmZ_SraJ and GlmY_tke1. Homology between these families has been established in the published literature [1].

This clan contains 2 families and the total number of sequence regions in the clan is 234.

Literature references

  1. Urban JH, Vogel J, PLoS Biol. 2008;6:e64.: Two seemingly homologous noncoding RNAs act hierarchically to activate glmS mRNA translation. 18351803

Members

This clan contains the following 2 member families:

GlmZ_SraJ GlmY_tke1

Secondary structures

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

Alignments

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family Num. regions Alignment
GlmY_tke1 (RF00128) 123 (52.6%) View
GlmZ_SraJ (RF00083) 111 (47.4%) View