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Clan: SNORA44 (CL00036)

Summary

SNORA44 clan

The SNORA44 clan contains the RNA families SNORA44, SNORA58, snR161 and snR9. Researchers at the human snoRNA database (snoRNABase) have established that the following human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: SNORA44 and snR161, SNORA58 and snR9 [1].

This clan contains 4 families and the total number of sequence regions in the clan is 416.

Literature references

  1. Lestrade L, Weber MJ;, Nucleic Acids Res. 2006;34:D158-D162.: snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. 16381836

Members

This clan contains the following 4 member families:

SNORA44 SNORA58 snR161 snR9

External database links

Secondary structures

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

Alignments

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family Num. regions Alignment
snR9 (RF01245) 11 (2.6%) View
snR161 (RF01237) 26 (6.2%) View
SNORA58 (RF00418) 119 (28.6%) View
SNORA44 (RF00405) 260 (62.5%) View