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Clan: SNORA62 (CL00040)

Summary

SNORA62 clan

The SNORA62 clan contains the RNA families SNORA62, snR65, snR3, snR82 and S_pombe_snR3. Homology between these families has been established in the published literature [1]. Researchers at the human snoRNA database (snoRNABase) have established that the following human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: SNORA62 and snR3, SNORA62 and snR65, SNORA62 and snR82 [2].

This clan contains 4 families and the total number of sequence regions in the clan is 582.

Literature references

  1. Li SG, Zhou H, Luo YP, Zhang P, Qu LH;, J Biol Chem. 2005;280:16446-16455.: Identification and functional analysis of 20 Box H/ACA small nucleolar RNAs (snoRNAs) from Schizosaccharomyces pombe. 15716270
  2. Lestrade L, Weber MJ;, Nucleic Acids Res. 2006;34:D158-D162.: snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. 16381836

Members

This clan contains the following 4 member families:

SNORA62 snR3 snR82 S_pombe_snR3

External database links

Secondary structures

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

Alignments

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family Num. regions Alignment
S_pombe_snR3 (RF01434) 5 (0.9%) View
snR82 (RF01261) 56 (9.6%) View
snR3 (RF01251) 74 (12.7%) View
SNORA62 (RF00091) 447 (76.8%) View