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Clan: SNORD33 (CL00054)

Summary

SNORD33 clan

The SNORD33 clan contains the RNA families SNORD33, snoZ196, SNORD51, snosnR55, snoMe18S-Um1356, snoMe28S-Am982, snR39, snR40 and snoR21b. Researchers at the human snoRNA database (snoRNABase) have established that the following human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: SNORD33 and snosnR55 [1]. Researchers at the plant snoRNA database have established that the following arabadopsis, human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: snoR21b and U32&SnR40, snoZ196 and U51&U32a&SnR39&SnR59 [2].

This clan contains 8 families and the total number of sequence regions in the clan is 1,139.

Literature references

  1. Lestrade L, Weber MJ;, Nucleic Acids Res. 2006;34:D158-D162.: snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. 16381836
  2. Brown JW, Echeverria M, Qu LH, Lowe TM, Bachellerie JP, Huttenhofer A, Kastenmayer JP, Green PJ, Shaw P, Marshall DF, Nucleic Acids Res 2003;31:432-435.: Plant snoRNA database. 12520043

Members

This clan contains the following 8 member families:

SNORD33 snoZ196 SNORD51 snosnR55 snoMe18S-Um1356 snoMe28S-Am982 snR39 snR40

External database links

Secondary structures

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

Alignments

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family Num. regions Alignment
snR40 (RF01201) 76 (6.7%) View
snR39 (RF01197) 55 (4.8%) View
snoMe28S-Am982 (RF00535) 71 (6.2%) View
snoMe18S-Um1356 (RF00532) 127 (11.2%) View
snosnR55 (RF00472) 66 (5.8%) View
SNORD51 (RF00280) 93 (8.2%) View
snoZ196 (RF00134) 214 (18.8%) View
SNORD33 (RF00133) 437 (38.4%) View