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Clan: SNORD52 (CL00063)

Summary

SNORD52 clan

The SNORD52 clan contains the RNA families SNORD52, SNORD53, snoZ157 and snR78. Researchers at the human snoRNA database (snoRNABase) have established that the following human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: SNORD52 and snR78 [1]. Researchers at the plant snoRNA database have established that the following arabadopsis, human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: snoZ157 and U53, snoZ157 and U52&SnR78 [2].

This clan contains 4 families and the total number of sequence regions in the clan is 679.

Literature references

  1. Lestrade L, Weber MJ;, Nucleic Acids Res. 2006;34:D158-D162.: snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. 16381836
  2. Brown JW, Echeverria M, Qu LH, Lowe TM, Bachellerie JP, Huttenhofer A, Kastenmayer JP, Green PJ, Shaw P, Marshall DF, Nucleic Acids Res 2003;31:432-435.: Plant snoRNA database. 12520043

Members

This clan contains the following 4 member families:

SNORD52 SNORD53_SNORD92 snoZ157 snR78

External database links

Secondary structures

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

Alignments

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family Num. regions Alignment
snR78 (RF01176) 30 (4.4%) View
snoZ157 (RF00333) 218 (32.1%) View
SNORD53_SNORD92 (RF00325) 369 (54.3%) View
SNORD52 (RF00276) 62 (9.1%) View