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Clan: SNORD60 (CL00066)

Summary

SNORD60 clan

The SNORD60 clan contains the RNA families SNORD60, snoR1, snosnR48, snoMe28S-G3255 and sn2903. Researchers at the human snoRNA database (snoRNABase) have established that the following human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: SNORD60 and snR48 [1]. Researchers at the plant snoRNA database have established that the following arabadopsis, human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: snoR1 and SnR48 [2].

This clan contains 5 families and the total number of sequence regions in the clan is 393.

Literature references

  1. Lestrade L, Weber MJ;, Nucleic Acids Res. 2006;34:D158-D162.: snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. 16381836
  2. Brown JW, Echeverria M, Qu LH, Lowe TM, Bachellerie JP, Huttenhofer A, Kastenmayer JP, Green PJ, Shaw P, Marshall DF, Nucleic Acids Res 2003;31:432-435.: Plant snoRNA database. 12520043

Members

This clan contains the following 5 member families:

SNORD60 snoR1 snosnR48 snoMe28S-G3255 sn2903

External database links

Secondary structures

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

Alignments

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family Num. regions Alignment
sn2903 (RF01194) 21 (5.3%) View
snoMe28S-G3255 (RF00527) 17 (4.3%) View
snosnR48 (RF00471) 47 (12.0%) View
snoR1 (RF00345) 173 (44.0%) View
SNORD60 (RF00271) 135 (34.4%) View