Please help Rfam by filling out a 4-minute survey

Your responses will help us understand how Rfam is used and what needs to be improved so that we can apply for new funding and continue developing Rfam.

0  structures 0  species 0  sequences

Clan: LhrC (CL00114)

Summary

LhrC clan

The LhrC clan contains the RNA families LhrC, Rli22 and Rli33, which are structurally and functionally related. They contain UCCC motifs important for post-transcriptional repression.[1]

This clan contains 3 families and the total number of sequence regions in the clan is 20.

Literature references

  1. Mollerup MS, Ross JA, Helfer AC, Meistrup K, Romby P, Kallipolitis BH, RNA Biol. 2016;13:895-915.: Two novel members of the LhrC family of small RNAs in Listeria monocytogenes with overlapping regulatory functions but distinctive expression profiles. 27400116

Members

This clan contains the following 3 member families:

LhrC rli22 rli33

Secondary structures

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

Alignments

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family Num. regions Alignment
rli33 (RF01469) 3 (15.0%) View
rli22 (RF01457) 1 (5.0%) View
LhrC (RF00616) 16 (80.0%) View