INFERNAL1/a [1.1.4 | Dec 2020] NAME Plasmid_R1162 ACC RF00043 DESC R1162-like plasmid antisense RNA STATES 234 NODES 60 CLEN 75 W 92 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:12:17 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 1.863281 CKSUM 2893794619 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 65.10 NC 52.40 EFP7GF -8.6010 0.71909 ECMLC 0.53774 -10.24965 0.72884 1600000 439612 0.002730 ECMGC 0.38221 -17.14100 -3.63065 1600000 69931 0.005720 ECMLI 0.50825 -8.28196 2.57793 1600000 299438 0.004008 ECMGI 0.40113 -12.43789 -0.00385 1600000 58638 0.006822 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 92 112 -6.921 -7.128 -0.054 -5.542 IL 1 1 2 1 4 5 30 96 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 4 30 95 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 5 29 92 112 -8.331 -0.019 -6.649 -1.079 1.264 -1.896 -0.224 D 4 2 3 5 3 1 27 91 111 -5.620 -0.734 -1.403 IL 5 5 3 5 3 4 29 93 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 77 - c - - MR 6 5 3 8 3 4 28 91 111 -8.331 -0.019 -6.649 -0.700 0.604 -1.485 0.592 D 7 5 3 8 3 1 25 89 109 -6.390 -1.568 -0.620 IR 8 8 3 8 3 3 28 92 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 76 - a - - MR 9 8 3 11 3 3 27 90 110 -8.331 -0.019 -6.649 0.691 -0.866 -1.033 0.431 D 10 8 3 11 3 1 25 88 108 -6.390 -1.568 -0.620 IR 11 11 3 11 3 3 27 91 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 75 - U - - MR 12 11 3 14 3 2 26 89 109 -8.331 -0.019 -6.649 -1.439 -1.444 -2.170 1.605 D 13 11 3 14 3 0 24 87 108 -6.390 -1.568 -0.620 IR 14 14 3 14 3 2 26 90 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 74 - C - - MR 15 14 3 17 2 1 25 88 108 -8.326 -0.005 -1.680 1.607 -2.502 -1.106 D 16 14 3 17 2 0 24 87 107 -4.432 -0.068 IR 17 17 3 17 2 1 25 89 109 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 6 ] - - - - - - B 18 17 3 19 123 0 24 87 107 [ BEGL 7 ] - - - - - - S 19 18 1 20 4 0 0 49 69 -0.045 -6.820 -6.227 -6.867 [ MATP 8 ] 2 36 G C - - MP 20 19 1 24 6 2 2 49 69 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -3.597 -0.811 -3.612 0.956 -4.164 -4.169 0.206 -4.040 -3.659 3.187 -4.047 0.304 -0.059 -3.549 -1.706 -2.595 ML 21 19 1 24 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 1 24 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 1 24 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 3 35 G C - - MP 26 25 6 30 6 2 2 47 67 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.696 -3.072 -4.791 0.231 -5.168 -4.676 -0.544 -5.030 -4.298 3.627 -4.638 -0.769 -0.931 -4.438 -2.579 -3.668 ML 27 25 6 30 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 4 34 C G - - MP 32 31 6 36 6 2 2 45 65 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 33 31 6 36 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 5 33 G C - - MP 38 37 6 42 6 2 2 43 63 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.696 -3.072 -4.791 0.231 -5.168 -4.676 -0.544 -5.030 -4.298 3.627 -4.638 -0.769 -0.931 -4.438 -2.579 -3.668 ML 39 37 6 42 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 6 32 C G - - MP 44 43 6 48 4 2 2 41 61 -6.921 -7.128 -0.296 -2.556 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 45 43 6 48 4 1 1 42 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 4 1 1 41 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 47 43 6 48 4 0 0 40 60 -4.568 -4.250 -2.265 -0.520 IL 48 48 5 48 4 1 1 43 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 49 49 6 49 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 7 - a - - - ML 50 49 6 52 3 1 1 39 58 -7.725 -0.024 -6.379 0.736 -0.862 -0.296 -0.044 D 51 49 6 52 3 0 0 38 57 -7.345 -0.527 -1.737 IL 52 52 3 52 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 8 - g - - - ML 53 52 3 55 3 1 1 38 57 -8.331 -0.019 -6.649 0.022 -0.880 0.293 0.282 D 54 52 3 55 3 0 0 37 56 -5.620 -0.734 -1.403 IL 55 55 3 55 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 31 - A - - MR 56 55 3 58 5 1 1 37 56 -7.071 -0.123 -6.887 -4.017 -7.991 1.708 -2.320 -1.958 -1.858 D 57 55 3 58 5 0 0 36 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 58 58 3 58 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 9 30 G C - - MP 59 58 3 63 6 2 2 36 55 -9.060 -8.999 -0.022 -7.776 -8.055 -8.451 -4.514 -2.986 -4.595 0.350 -4.911 -4.603 -0.332 -4.819 -4.175 3.578 -4.529 -0.678 -0.724 -4.317 -2.357 -3.475 ML 60 58 3 63 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 3 63 6 1 1 34 53 -7.357 -6.086 -1.069 -6.064 -1.198 -4.278 -0.039 0.434 -0.738 0.105 D 62 58 3 63 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 29 g c - - MP 65 64 6 69 6 2 2 34 53 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -2.832 -0.979 -2.905 1.087 -2.845 -3.657 1.815 -3.144 -2.998 2.387 -3.468 -0.296 0.957 -2.970 -0.608 -1.941 ML 66 64 6 69 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 28 c g - - MP 71 70 6 75 6 2 2 32 51 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -2.570 -2.636 0.176 0.670 -2.220 -3.430 2.513 -2.738 -2.713 0.840 -3.222 -0.950 1.275 -2.836 0.448 -1.766 ML 72 70 6 75 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 27 G C - - MP 77 76 6 81 6 2 2 30 49 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.696 -3.072 -4.791 0.231 -5.168 -4.676 -0.544 -5.030 -4.298 3.627 -4.638 -0.769 -0.931 -4.438 -2.579 -3.668 ML 78 76 6 81 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 26 G C - - MP 83 82 6 87 6 2 2 28 47 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.696 -3.072 -4.791 0.231 -5.168 -4.676 -0.544 -5.030 -4.298 3.627 -4.638 -0.769 -0.931 -4.438 -2.579 -3.668 ML 84 82 6 87 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 25 G C - - MP 89 88 6 93 6 2 2 26 45 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -3.910 -0.612 -3.943 0.728 -4.476 -4.326 -0.047 -4.345 -3.865 3.367 -4.240 -0.410 -0.329 -3.804 -1.987 -2.909 ML 90 88 6 93 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 24 G C - - MP 95 94 6 99 4 2 2 24 43 -3.415 -7.128 -0.188 -5.542 -3.703 -2.692 -3.675 0.848 -3.737 -4.226 0.736 -3.907 -3.718 3.120 -4.102 -0.404 0.837 -3.649 -1.269 -2.606 ML 96 94 6 99 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 24 43 -2.137 -2.820 -0.723 -5.306 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - u - - - ML 101 100 6 103 3 1 1 20 39 -7.939 -0.021 -6.593 0.156 -0.166 -0.374 0.291 D 102 100 6 103 3 0 0 19 38 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - u - - - ML 104 103 3 106 3 1 1 19 37 -7.939 -0.312 -2.393 0.177 -0.796 -0.108 0.449 D 105 103 3 106 3 0 0 18 37 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - u - - - ML 107 106 3 109 3 1 1 18 36 -7.653 -0.026 -6.307 0.087 -0.723 0.048 0.376 D 108 106 3 109 3 0 0 16 35 -7.573 -1.585 -0.597 IL 109 109 3 109 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - g - - - ML 110 109 3 112 3 1 1 16 35 -7.759 -0.024 -6.413 -0.338 -0.675 0.916 -0.523 D 111 109 3 112 3 0 0 15 34 -7.222 -2.735 -0.246 IL 112 112 3 112 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - u - - - ML 113 112 3 115 3 1 1 15 33 -7.759 -0.024 -6.413 0.347 -0.359 -0.918 0.505 D 114 112 3 115 3 0 0 14 32 -7.222 -2.735 -0.246 IL 115 115 3 115 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - G - - - ML 116 115 3 118 3 1 1 13 32 -7.759 -0.024 -6.413 -0.001 -1.497 1.075 -0.892 D 117 115 3 118 3 0 0 13 31 -7.222 -0.585 -1.614 IL 118 118 3 118 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - a - - - ML 119 118 3 121 2 1 1 1 1 * 0.000 0.319 -0.418 -0.297 0.252 D 120 118 3 121 2 0 0 0 0 * 0.000 IL 121 121 3 121 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 122 121 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 123 18 1 124 3 0 4 51 71 -7.939 -0.021 -6.593 IL 124 124 2 124 3 1 3 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 37 - U - - - ML 125 124 2 127 3 1 4 51 71 -7.939 -0.021 -6.593 -1.439 -1.444 -2.170 1.605 D 126 124 2 127 3 0 0 50 70 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 3 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 38 - A - - - ML 128 127 3 130 3 1 4 50 70 -7.939 -0.021 -6.593 1.174 -1.444 -0.255 -0.896 D 129 127 3 130 3 0 0 49 69 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 39 - A - - - ML 131 130 3 133 5 1 4 49 69 -7.071 -0.040 -6.887 -7.099 -7.991 1.708 -2.320 -1.958 -1.858 D 132 130 3 133 5 0 0 48 67 -4.959 -0.803 -4.221 -2.596 -2.508 IL 133 133 3 133 5 1 2 50 69 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 40 73 C G - - MP 134 133 3 138 6 2 5 48 68 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 135 133 3 138 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 3 138 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 3 138 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 2 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 41 72 C G - - MP 140 139 6 144 6 2 4 46 66 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 141 139 6 144 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 42 71 A U - - MP 146 145 6 150 4 2 2 44 64 -6.921 -7.128 -0.054 -5.542 -3.752 -2.794 -3.774 3.306 -4.093 -5.152 0.204 -3.819 -3.667 1.120 -4.213 -0.276 -0.213 -4.346 -1.737 -2.610 ML 147 145 6 150 4 1 1 45 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 4 1 1 44 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 149 145 6 150 4 0 0 43 63 -4.568 -4.250 -2.265 -0.520 IL 150 150 5 150 4 1 1 46 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - c - - - ML 152 151 6 154 3 1 2 42 61 -7.939 -0.021 -6.593 -0.715 0.676 -1.503 0.526 D 153 151 6 154 3 0 0 41 60 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - c - - - ML 155 154 3 157 3 1 1 41 60 -7.939 -0.021 -6.593 0.233 0.328 -0.542 -0.180 D 156 154 3 157 3 0 0 39 59 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - A - - - ML 158 157 3 160 3 1 1 40 59 -7.939 -0.021 -6.593 1.264 -0.797 -1.235 -0.744 D 159 157 3 160 3 0 0 38 58 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - a - - - ML 161 160 3 163 3 1 1 39 58 -7.939 -0.109 -3.860 0.754 0.075 -1.080 -0.345 D 162 160 3 163 3 0 0 37 57 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 47 - c - - - ML 164 163 3 166 3 1 1 38 57 -8.250 -0.020 -6.568 -0.208 0.969 -1.384 -0.333 D 165 163 3 166 3 0 0 36 55 -6.024 -1.138 -0.915 IL 166 166 3 166 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 70 - A - - MR 167 166 3 169 3 1 1 37 55 -8.250 -0.358 -2.208 1.665 -2.146 -1.801 -1.667 D 168 166 3 169 3 0 0 35 54 -6.924 -0.883 -1.154 IR 169 169 3 169 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 69 - A - - MR 170 169 3 172 3 1 1 36 55 -2.836 -0.239 -6.336 1.507 -1.661 -1.363 -1.142 D 171 169 3 172 3 0 0 34 53 -7.766 -0.425 -1.996 IR 172 172 3 172 3 1 1 36 55 -2.361 -0.388 -4.599 0.000 0.000 0.000 0.000 [ MATR 45 ] - 67 - C - - MR 173 172 3 175 3 1 1 34 53 -8.331 -0.019 -6.649 -1.680 1.607 -2.502 -1.106 D 174 172 3 175 3 0 0 33 52 -6.390 -1.568 -0.620 IR 175 175 3 175 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 66 - u - - MR 176 175 3 178 3 1 1 33 52 -8.331 -0.019 -6.649 0.171 -0.857 0.172 0.257 D 177 175 3 178 3 0 0 32 51 -6.390 -1.568 -0.620 IR 178 178 3 178 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 65 - A - - MR 179 178 3 181 5 1 1 32 51 -7.071 -0.040 -6.887 -7.099 -7.991 1.708 -2.320 -1.958 -1.858 D 180 178 3 181 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 181 181 3 181 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 48 64 u a - - MP 182 181 3 186 6 2 2 31 50 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -2.561 -2.544 -2.674 0.866 -0.230 -3.477 1.778 -2.758 -2.709 1.625 -3.234 -0.732 1.946 -2.821 -0.122 -1.731 ML 183 181 3 186 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 184 181 3 186 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 3 186 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 186 186 5 186 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 63 g c - - MP 188 187 6 192 6 2 2 29 48 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -3.433 -2.662 -3.424 0.915 -3.286 -4.090 1.118 -3.578 -3.495 2.802 -3.915 -0.417 1.406 -3.470 -0.885 -2.361 ML 189 187 6 192 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 190 187 6 192 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 191 187 6 192 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 192 192 5 192 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 193 193 6 193 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 62 c g - - MP 194 193 6 198 6 2 2 27 46 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -3.652 -3.576 -3.531 0.164 -2.480 -4.106 2.746 -3.187 -3.543 0.424 -3.934 -1.551 2.196 -3.791 -0.154 -2.413 ML 195 193 6 198 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 196 193 6 198 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 197 193 6 198 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 198 198 5 198 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 199 199 6 199 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 61 C G - - MP 200 199 6 204 6 2 2 25 44 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 201 199 6 204 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 202 199 6 204 6 1 1 24 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 203 199 6 204 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 204 204 5 204 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 205 205 6 205 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 60 U A - - MP 206 205 6 210 4 2 2 23 42 -6.921 -7.128 -0.054 -5.542 -4.141 -3.965 -3.985 -0.263 -2.937 -4.553 1.390 -3.630 -3.990 -0.002 -4.366 -1.865 3.304 -4.294 -0.615 -2.819 ML 207 205 6 210 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 208 205 6 210 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 209 205 6 210 4 0 0 22 42 -4.568 -4.250 -2.265 -0.520 IL 210 210 5 210 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 211 211 6 211 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - G - - - ML 212 211 6 214 3 1 1 21 39 -8.331 -0.019 -6.649 -0.271 -1.834 1.303 -1.239 D 213 211 6 214 3 0 0 19 38 -5.620 -0.734 -1.403 IL 214 214 3 214 3 1 1 21 40 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 59 - G - - MR 215 214 3 217 5 1 1 20 38 -7.071 -0.040 -6.887 -7.099 -7.991 -1.526 -2.738 1.711 -2.125 D 216 214 3 217 5 0 0 19 37 -5.352 -0.707 -2.978 -4.409 -2.404 IR 217 217 3 217 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 54 58 c g - - MP 218 217 3 222 4 2 2 18 37 -6.921 -7.128 -0.054 -5.542 -2.162 -2.293 -0.670 0.781 -2.167 -3.149 2.643 -2.586 -2.388 0.839 -1.236 -0.788 1.097 -2.474 -0.269 -1.529 ML 219 217 3 222 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 220 217 3 222 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 221 217 3 222 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 222 222 5 222 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 223 223 6 223 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - A - - - ML 224 223 6 226 3 1 1 15 33 -7.939 -0.021 -6.593 1.708 -2.320 -1.958 -1.858 D 225 223 6 226 3 0 0 15 33 -6.174 -1.687 -0.566 IL 226 226 3 226 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - A - - - ML 227 226 3 229 3 1 1 13 31 -7.939 -0.021 -6.593 1.049 -0.374 -1.121 -0.515 D 228 226 3 229 3 0 0 13 32 -6.174 -1.687 -0.566 IL 229 229 3 229 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - A - - - ML 230 229 3 232 2 1 1 1 1 * 0.000 1.708 -2.320 -1.958 -1.858 D 231 229 3 232 2 0 0 0 0 * 0.000 IL 232 232 3 232 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 233 232 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Plasmid_R1162 ACC RF00043 DESC R1162-like plasmid antisense RNA LENG 75 MAXL 159 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:12:18 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 8 EFFN 3.011719 CKSUM 2893794619 STATS LOCAL MSV -8.3517 0.71909 STATS LOCAL VITERBI -9.2550 0.71909 STATS LOCAL FORWARD -3.5644 0.71909 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41460 1.24706 1.24862 1.69975 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 0.00000 * 1 2.52233 0.36504 3.12074 1.70686 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 2 1.84827 2.78388 0.34386 2.63572 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 3 2.78386 3.54367 0.12943 3.48351 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 4 3.51221 0.17553 3.32030 2.35372 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 5 2.78021 3.53881 0.13008 3.47686 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 6 3.50634 0.17599 3.31727 2.35264 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.22779 4.03548 1.68183 1.46634 0.26236 1.09861 0.40547 7 0.82557 2.08088 1.59438 1.45175 7 a - - - 1.38629 1.38629 1.38629 1.38629 0.04344 3.85113 3.85113 1.46634 0.26236 0.17399 1.83449 8 1.41866 2.11773 1.10120 1.18684 8 g - - - 1.38629 1.38629 1.38629 1.38629 0.11856 4.03548 2.36311 1.46634 0.26236 1.09861 0.40547 9 2.66952 3.37305 0.15096 3.30920 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03903 3.95595 3.95595 1.46634 0.26236 0.31889 1.29812 10 1.72455 1.37816 0.90709 1.79572 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 11 1.60136 0.84124 2.12132 1.39704 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 12 2.77450 3.53122 0.13111 3.46652 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 13 2.77471 3.53151 0.13107 3.46691 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 14 1.97295 3.08140 0.27094 2.94886 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 15 2.15941 2.44039 0.41530 1.98530 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.14180 2.16697 4.03548 0.28444 1.39608 1.09861 0.40547 16 1.28983 1.47862 1.63854 1.19579 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 17 1.27321 2.04403 1.42616 1.04887 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.29495 4.03548 1.43653 1.46634 0.26236 1.09861 0.40547 18 1.35707 1.97073 1.30066 1.10600 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04639 3.78693 3.78693 1.46634 0.26236 1.06522 0.42259 19 1.82837 1.92699 0.58509 1.99010 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04216 3.88044 3.88044 1.46634 0.26236 2.40919 0.09419 20 1.12354 1.64951 2.12089 1.01389 21 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04216 3.88044 3.88044 1.46634 0.26236 2.40919 0.09419 21 1.46949 2.69892 0.50769 2.29466 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04216 3.88044 3.88044 1.46634 0.26236 0.19818 1.71604 22 1.15588 1.69240 1.58144 1.21921 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 23 2.13825 0.46766 2.26377 1.88577 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 24 3.15618 0.25341 2.89543 2.07158 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 25 3.60555 0.15949 3.35215 2.46228 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 26 3.57193 0.16193 3.33576 2.45560 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 27 1.83199 2.27505 0.49198 2.07385 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 28 1.99686 0.93804 1.26990 1.65033 29 c - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 29 3.18201 0.21218 3.08864 2.26225 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 30 0.11246 3.53800 3.23382 3.27301 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 31 2.63122 3.48197 0.15180 3.26744 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 32 3.65685 0.15593 3.37663 2.47212 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 33 2.63053 3.48093 0.15195 3.26626 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 34 3.64901 0.15646 3.37293 2.47064 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 35 2.86198 0.39827 2.58769 1.62877 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 36 2.89383 2.81041 3.42113 0.16043 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 37 0.47894 2.66192 1.55569 2.30558 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 38 0.11246 3.53800 3.23382 3.27301 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 39 3.52230 0.17474 3.32549 2.35558 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 40 3.51679 0.17517 3.32265 2.35456 41 C - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 41 0.23738 3.15150 2.10408 3.06702 42 A - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 42 2.12592 0.79806 2.70441 1.01179 43 c - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 43 1.23323 1.06815 1.78841 1.62060 44 c - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 44 0.40131 2.00808 2.49953 2.16989 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 45 0.78726 1.26699 2.32707 1.79786 46 a - - - 1.38629 1.38629 1.38629 1.38629 0.11301 4.03548 2.41704 1.46634 0.26236 1.09861 0.40547 46 1.66309 0.54792 2.64559 1.82430 47 C - - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96129 3.96129 1.46634 0.26236 0.33391 1.25921 47 2.03544 1.27355 1.38661 1.07993 48 u - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 48 2.08220 2.11378 0.61576 1.54022 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 49 2.69339 0.75191 2.45554 0.98065 50 c - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 50 3.50214 0.17633 3.31510 2.35186 51 C - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 51 3.32149 2.17448 3.11076 0.21608 52 U - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 52 1.70926 3.00840 0.36127 2.61950 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 53 1.66147 0.90652 1.66509 1.52767 54 c - - < 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 54 0.11246 3.53800 3.23382 3.27301 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 55 0.55725 1.64117 2.38107 1.95889 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 56 0.11246 3.53800 3.23382 3.27301 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 57 1.75761 2.03181 0.63454 1.79416 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 58 3.00075 3.91625 0.10559 3.48857 59 G - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 59 0.24489 3.30088 2.01101 3.06822 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 60 2.63241 3.48375 0.15155 3.26949 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 61 1.09732 2.62470 0.67688 2.45835 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 62 1.67389 0.67904 1.94207 1.82033 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 63 1.03972 1.49361 1.34018 1.83203 64 a - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 64 0.11246 3.53800 3.23382 3.27301 65 A - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 65 1.28715 2.09229 1.20103 1.20512 66 g - - - 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 66 3.20705 0.14127 3.77867 2.68213 67 C - - - 1.38629 1.38629 1.38629 1.38629 0.56889 1.82447 1.29995 0.20639 1.67942 1.09861 0.40547 67 0.21632 2.93579 2.69016 2.60957 69 A - - - 1.38629 1.38629 1.38629 1.38629 0.15480 3.74129 2.12284 1.46634 0.26236 0.12197 2.16436 68 0.13209 3.38727 3.09705 3.10652 70 A - - - 1.38629 1.38629 1.38629 1.38629 0.03882 3.96129 3.96129 1.46634 0.26236 0.33391 1.25921 69 3.28858 2.43305 2.95908 0.19473 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 70 2.63460 3.48705 0.15108 3.27328 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 71 2.63484 3.48741 0.15103 3.27370 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 72 3.20705 0.14127 3.77867 2.68213 74 C - - : 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 73 2.89383 2.81041 3.42113 0.16043 75 U - - : 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 74 0.84758 2.12638 2.24764 1.05949 76 a - - : 1.38629 1.38629 1.38629 1.38629 0.03599 4.03548 4.03548 1.46634 0.26236 1.09861 0.40547 75 2.11028 0.85413 2.68432 0.95484 77 c - - : 1.38629 1.38629 1.38629 1.38629 0.01816 4.01765 * 1.46634 0.26236 0.00000 * //