INFERNAL1/a [1.1 | October 2013] NAME SNORD31 ACC RF00089 DESC Small nucleolar RNA SNORD31 DESC Small nucleolar RNA SNORD31 STATES 211 NODES 69 CLEN 69 W 88 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:15:07 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 4.116455 CKSUM 3431122816 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 39.50 EFP7GF -11.1768 0.71875 ECMLC 0.66675 -6.24497 2.00119 1600000 293085 0.004094 ECMGC 0.39852 -18.61120 -5.23988 1600000 82468 0.004850 ECMLI 0.66233 -4.16658 3.68001 1600000 216879 0.005533 ECMGI 0.46109 -12.53484 -1.47483 1600000 65590 0.006098 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 88 111 -7.645 -7.852 -0.033 -6.266 IL 1 1 2 1 4 3 32 91 114 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 32 90 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 4 31 88 111 -8.621 -0.013 -7.275 0.581 0.376 -1.445 -0.252 D 4 2 3 5 3 0 27 86 109 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 31 89 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 3 30 87 110 -8.977 -0.012 -7.294 -0.349 -0.589 -1.642 1.157 D 7 5 3 8 3 0 26 86 108 -5.620 -0.734 -1.403 IL 8 8 3 8 3 2 29 88 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 76 - g - - MR 9 8 3 11 3 3 29 86 109 -8.977 -0.012 -7.294 -0.040 -0.729 0.566 -0.084 D 10 8 3 11 3 0 25 84 107 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 29 87 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 75 - u - - MR 12 11 3 14 5 3 28 85 108 -7.682 -0.026 -7.497 -7.709 -8.601 0.148 -0.762 -0.699 0.754 D 13 11 3 14 5 0 24 84 106 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 27 85 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 74 c g - - MP 15 14 3 19 6 3 27 84 107 -9.414 -9.354 -0.017 -8.130 -8.410 -8.805 -3.112 -3.051 -3.215 1.110 -2.612 -4.045 2.527 -3.146 -3.195 0.805 -3.728 -0.275 1.577 -3.369 0.411 -2.141 ML 16 14 3 19 6 1 25 83 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 24 83 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 21 81 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 26 84 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 26 83 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 73 a u - - MP 21 20 6 25 4 2 25 82 105 -7.645 -7.852 -0.033 -6.266 -3.537 -2.779 -3.601 2.835 -3.833 -4.592 0.415 -3.833 -3.623 1.729 -4.128 0.120 0.922 -3.805 -1.506 -2.534 ML 22 20 6 25 4 1 24 82 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 22 81 104 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 21 80 103 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 25 83 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 82 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 5 - c - - - ML 27 26 6 29 3 1 24 80 102 -8.621 -0.013 -7.275 -0.291 0.796 -0.827 -0.179 D 28 26 6 29 3 0 20 78 101 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 24 81 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - c - - - ML 30 29 3 32 3 1 23 79 101 -8.621 -0.179 -3.133 -0.547 0.800 -1.753 0.354 D 31 29 3 32 3 0 20 77 100 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 23 80 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - A - - - ML 33 32 3 35 3 1 22 78 101 -8.457 -0.131 -3.573 1.403 -1.081 -1.630 -0.838 D 34 32 3 35 3 0 19 76 99 -7.535 -1.214 -0.828 IL 35 35 3 35 3 1 23 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - G - - - ML 36 35 3 38 3 1 22 77 100 -3.183 -0.180 -7.088 -0.166 -1.216 1.059 -0.751 D 37 35 3 38 3 0 18 75 98 -7.644 -0.413 -2.036 IL 38 38 3 38 3 1 21 77 100 -1.869 -0.548 -4.569 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - - - ML 39 38 3 41 3 1 21 76 98 -8.621 -0.013 -7.275 -1.728 -1.756 -2.013 1.657 D 40 38 3 41 3 0 16 74 97 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 77 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - - - ML 42 41 3 44 3 1 20 75 97 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 43 41 3 44 3 0 15 73 96 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 76 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - A - - - ML 45 44 3 47 3 1 19 74 96 -8.621 -0.052 -4.924 1.766 -2.217 -2.458 -2.303 D 46 44 3 47 3 0 15 72 94 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 75 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - U - - - ML 48 47 3 50 3 1 19 73 95 -8.582 -0.013 -7.237 -2.658 -2.462 -3.431 1.835 D 49 47 3 50 3 0 14 71 93 -6.645 -2.158 -0.385 IL 50 50 3 50 3 1 18 74 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - G - - - ML 51 50 3 53 3 1 18 72 94 -8.582 -0.013 -7.237 -2.805 -4.175 1.894 -3.540 D 52 50 3 53 3 0 14 70 92 -6.645 -2.158 -0.385 IL 53 53 3 53 3 1 17 73 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 54 53 3 56 3 1 17 71 93 -8.582 -0.066 -4.571 1.887 -3.602 -3.122 -3.269 D 55 53 3 56 3 0 13 69 92 -6.645 -0.992 -1.037 IL 56 56 3 56 3 1 17 72 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - g - - - ML 57 56 3 59 3 1 16 70 92 -8.571 -0.097 -4.002 -0.002 -0.891 0.550 -0.003 D 58 56 3 59 3 0 12 68 91 -6.762 -2.275 -0.351 IL 59 59 3 59 3 1 16 71 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - u - - - ML 60 59 3 62 3 1 16 69 91 -8.488 -0.014 -7.142 -0.213 -0.255 -1.448 0.950 D 61 59 3 62 3 0 12 67 90 -7.368 -0.517 -1.760 IL 62 62 3 62 3 1 15 70 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - U - - - ML 63 62 3 65 3 1 15 68 90 -8.621 -0.013 -7.275 -0.907 -0.647 -1.658 1.329 D 64 62 3 65 3 0 10 66 89 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 69 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - u - - - ML 66 65 3 68 3 1 15 67 89 -8.621 -0.013 -7.275 -0.343 0.049 0.017 0.221 D 67 65 3 68 3 0 9 65 88 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 68 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - a - - - ML 69 68 3 71 3 1 14 66 88 -8.621 -0.036 -5.517 0.835 -0.697 -0.444 -0.210 D 70 68 3 71 3 0 9 64 87 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 13 67 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - a - - - ML 72 71 3 74 3 1 14 65 87 -8.599 -0.013 -7.253 0.908 -1.179 -0.839 0.167 D 73 71 3 74 3 0 8 63 86 -6.466 -1.195 -0.858 IL 74 74 3 74 3 1 12 66 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - U - - - ML 75 74 3 77 3 1 13 64 86 -2.864 -0.224 -7.275 -0.834 -1.605 -2.201 1.532 D 76 74 3 77 3 0 7 61 84 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 12 64 87 -1.576 -0.664 -4.902 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 78 77 3 80 3 1 12 62 85 -8.621 -0.013 -7.275 1.791 -2.967 -1.993 -2.637 D 79 77 3 80 3 0 7 60 83 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 11 63 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - C - - - ML 81 80 3 83 3 1 12 61 84 -8.621 -0.013 -7.275 -2.493 1.719 -3.346 -1.214 D 82 80 3 83 3 0 6 59 82 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 62 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 84 83 3 86 3 1 11 60 82 -8.621 -0.013 -7.275 -2.341 1.675 -3.209 -0.997 D 85 83 3 86 3 0 6 58 81 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 10 61 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - G - - - ML 87 86 3 89 3 1 10 59 81 -8.621 -0.013 -7.275 -1.336 -3.218 1.740 -2.673 D 88 86 3 89 3 0 5 57 80 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 9 60 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 90 89 3 92 3 1 10 58 80 -8.621 -0.013 -7.275 -3.291 1.869 -4.072 -2.431 D 91 89 3 92 3 0 4 56 79 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 59 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - C - - - ML 93 92 3 95 3 1 9 57 79 -8.621 -0.013 -7.275 -3.291 1.869 -4.072 -2.431 D 94 92 3 95 3 0 4 55 78 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 8 58 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 96 95 3 98 3 1 8 56 78 -8.621 -0.052 -4.918 -3.291 1.869 -4.072 -2.431 D 97 95 3 98 3 0 3 54 77 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 7 57 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - C - - - ML 99 98 3 101 3 1 8 55 77 -8.582 -0.013 -7.236 -3.208 1.862 -3.997 -2.359 D 100 98 3 101 3 0 3 53 76 -6.647 -0.990 -1.039 IL 101 101 3 101 3 1 6 56 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - A - - - ML 102 101 3 104 3 1 8 54 76 -8.621 -0.013 -7.275 1.768 -2.672 -2.530 -1.921 D 103 101 3 104 3 0 2 52 75 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 6 55 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - G - - - ML 105 104 3 107 3 1 7 53 75 -8.621 -0.013 -7.275 -2.169 -3.285 1.789 -2.183 D 106 104 3 107 3 0 1 51 74 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 5 54 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - U - - - ML 108 107 3 110 3 1 7 52 74 -8.621 -0.013 -7.275 -1.714 -1.748 -1.978 1.652 D 109 107 3 110 3 0 1 50 73 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 5 53 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - - - ML 111 110 3 113 3 1 6 51 73 -8.621 -0.013 -7.275 -3.291 1.869 -4.072 -2.431 D 112 110 3 113 3 0 0 49 72 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 4 52 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 114 113 3 116 3 1 6 50 72 -8.621 -0.013 -7.275 -2.729 -2.522 -3.504 1.843 D 115 113 3 116 3 0 0 48 71 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 4 51 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - - - ML 117 116 3 119 3 1 5 49 71 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 118 116 3 119 3 0 0 47 70 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 3 50 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - - - ML 120 119 3 122 3 1 4 48 70 -8.621 -0.013 -7.275 1.893 -3.675 -3.189 -3.348 D 121 119 3 122 3 0 0 46 69 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 3 49 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - - - ML 123 122 3 125 3 1 3 47 69 -8.621 -0.013 -7.275 -0.689 -1.374 -1.383 1.384 D 124 122 3 125 3 0 0 45 68 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 2 48 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - u - - - ML 126 125 3 128 3 1 2 46 68 -8.621 -0.013 -7.275 0.036 0.325 -1.419 0.431 D 127 125 3 128 3 0 0 45 68 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 47 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - a - - - ML 129 128 3 131 3 1 1 45 67 -8.621 -0.275 -2.548 0.899 -0.977 -0.599 -0.049 D 130 128 3 131 3 0 0 45 68 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 46 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - c - - - ML 132 131 3 134 3 1 2 42 65 -5.334 -0.048 -7.016 -0.006 0.811 -1.500 -0.157 D 133 131 3 134 3 0 0 45 68 -0.494 -3.452 -2.331 IL 134 134 3 134 3 1 1 46 68 -1.173 -0.910 -5.367 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - U - - - ML 135 134 3 137 3 1 2 40 59 -8.621 -0.013 -7.275 -0.994 -0.628 -1.085 1.251 D 136 134 3 137 3 0 0 38 58 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - G - - - ML 138 137 3 140 3 1 1 39 58 -8.621 -0.013 -7.275 -0.189 -1.325 1.204 -1.250 D 139 137 3 140 3 0 0 37 57 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - - - ML 141 140 3 143 3 1 1 38 57 -8.621 -0.013 -7.275 -2.729 -2.522 -3.504 1.843 D 142 140 3 143 3 0 0 36 56 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - G - - - ML 144 143 3 146 3 1 1 36 55 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 145 143 3 146 3 0 0 35 54 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - A - - - ML 147 146 3 149 3 1 1 35 54 -8.621 -0.013 -7.275 1.540 -1.357 -1.518 -1.502 D 148 146 3 149 3 0 0 34 53 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - C - - - ML 150 149 3 152 3 1 1 34 53 -8.621 -0.050 -4.999 -1.388 1.509 -1.704 -1.106 D 151 149 3 152 3 0 0 33 52 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - U - - - ML 153 152 3 155 3 1 1 33 52 -8.585 -0.013 -7.239 -1.160 -1.689 -2.358 1.607 D 154 152 3 155 3 0 0 32 51 -6.620 -1.018 -1.011 IL 155 155 3 155 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - G - - - ML 156 155 3 158 3 1 1 32 51 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 157 155 3 158 3 0 0 31 50 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - A - - - ML 159 158 3 161 3 1 1 31 50 -8.621 -0.013 -7.275 1.893 -3.675 -3.189 -3.348 D 160 158 3 161 3 0 0 30 49 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - a - - - ML 162 161 3 164 3 1 1 30 49 -8.621 -0.013 -7.275 0.921 -1.279 -1.439 0.407 D 163 161 3 164 3 0 0 29 48 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - a - - - ML 165 164 3 167 3 1 1 29 48 -4.434 -0.078 -7.275 0.943 -1.207 -1.027 0.206 D 166 164 3 167 3 0 0 27 46 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 30 49 -1.656 -0.658 -4.356 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - G - - - ML 168 167 3 170 3 1 1 28 46 -8.621 -0.013 -7.275 -1.107 -1.796 1.569 -1.829 D 169 167 3 170 3 0 0 27 46 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - G - - - ML 171 170 3 173 3 1 1 26 45 -8.621 -0.013 -7.275 -1.276 -3.177 1.729 -2.633 D 172 170 3 173 3 0 0 26 44 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - U - - - ML 174 173 3 176 3 1 1 25 44 -8.621 -0.013 -7.275 -1.603 -1.685 -1.717 1.611 D 175 173 3 176 3 0 0 24 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - A - - - ML 177 176 3 179 3 1 1 24 43 -8.621 -0.151 -3.372 1.533 -1.915 -1.952 -0.779 D 178 176 3 179 3 0 0 23 42 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 62 - U - - - ML 180 179 3 182 3 1 1 23 42 -3.992 -0.339 -2.772 -0.797 -0.648 -1.825 1.324 D 181 179 3 182 3 0 0 22 40 -7.385 -0.510 -1.776 IL 182 182 3 182 3 1 1 24 43 -1.705 -0.630 -4.405 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - u - - - ML 183 182 3 185 3 1 1 22 40 -8.426 -0.015 -7.080 -0.176 -0.068 -1.050 0.747 D 184 182 3 185 3 0 0 21 39 -7.684 -0.400 -2.075 IL 185 185 3 185 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - U - - - ML 186 185 3 188 3 1 1 21 39 -8.621 -0.013 -7.275 -1.452 -0.058 -2.240 1.300 D 187 185 3 188 3 0 0 20 39 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - U - - - ML 189 188 3 191 3 1 1 19 38 -8.621 -0.013 -7.275 -1.133 -1.308 -2.229 1.549 D 190 188 3 191 3 0 0 19 38 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - C - - - ML 192 191 3 194 3 1 1 18 37 -8.621 -0.013 -7.275 -3.291 1.869 -4.072 -2.431 D 193 191 3 194 3 0 0 18 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 68 - U - - - ML 195 194 3 197 3 1 1 17 36 -8.621 -0.013 -7.275 -2.729 -2.522 -3.504 1.843 D 196 194 3 197 3 0 0 17 35 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 69 - G - - - ML 198 197 3 200 3 1 1 16 34 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 199 197 3 200 3 0 0 16 34 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 70 - A - - - ML 201 200 3 203 3 1 1 14 33 -8.621 -0.216 -2.873 1.893 -3.675 -3.189 -3.348 D 202 200 3 203 3 0 0 14 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 71 - g - - - ML 204 203 3 206 3 1 1 13 31 -8.420 -0.065 -4.613 -0.045 -1.057 0.687 -0.088 D 205 203 3 206 3 0 0 12 31 -7.708 -1.860 -0.475 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 72 - C - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -0.673 1.046 -1.810 0.034 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 68 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [i1.1 | October 2013] NAME SNORD31 ACC RF00089 DESC Small nucleolar RNA SNORD31 DESC Small nucleolar RNA SNORD31 LENG 69 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:15:07 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 26 EFFN 4.484619 CKSUM 3431122816 STATS LOCAL MSV -8.1786 0.71875 STATS LOCAL VITERBI -9.1619 0.71875 STATS LOCAL FORWARD -3.9957 0.71875 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36406 1.48329 1.47763 1.24025 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 0.00000 * 1 0.97644 1.11061 2.42838 1.58079 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 2 1.64200 1.80750 2.56671 0.56995 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 3 1.85333 0.95380 1.77746 1.24152 3 c - - < 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 4 0.72984 2.42583 1.28362 1.88008 4 a - - < 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 5 1.60473 0.81543 1.96860 1.52806 5 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 6 1.78931 0.81233 2.65221 1.14379 6 c - - _ 1.38629 1.38629 1.38629 1.38629 0.14931 4.40770 2.06739 1.46634 0.26236 1.09861 0.40547 7 0.39641 2.15416 2.57036 2.00423 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.11631 4.28629 2.34292 1.46634 0.26236 0.76416 0.62684 8 1.52027 2.25425 0.62911 1.94261 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.15431 2.04792 4.26944 0.20435 1.68837 0.15908 1.91685 9 2.66137 2.66922 2.82631 0.22113 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 10 3.47860 4.44226 0.06303 3.99186 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 11 0.15108 2.96491 3.16743 3.06727 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05396 4.40770 3.21025 1.46634 0.26236 1.09861 0.40547 12 3.33662 3.18437 3.87452 0.10284 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02539 4.37913 4.37913 1.46634 0.26236 1.66991 0.20858 13 3.43238 4.39170 0.06619 3.94469 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02539 4.37913 4.37913 1.46634 0.26236 1.66991 0.20858 14 0.06976 3.99317 3.65237 3.77158 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06487 4.37913 2.99035 1.46634 0.26236 0.47245 0.97676 15 1.39669 2.02043 0.98865 1.39469 16 g - - _ 1.38629 1.38629 1.38629 1.38629 0.08850 4.37034 2.63033 1.46634 0.26236 1.79342 0.18199 16 1.54353 1.56407 2.42314 0.71652 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02726 4.30910 4.30910 1.46634 0.26236 0.20676 1.67779 17 2.05361 1.85006 2.57546 0.44882 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 18 1.64413 1.34281 1.36425 1.23740 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 19 0.79821 1.87711 1.69766 1.54308 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04157 4.40770 3.55667 1.46634 0.26236 1.09861 0.40547 20 0.74502 2.23589 1.98211 1.27082 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02508 4.39122 4.39122 1.46634 0.26236 0.61732 0.77520 21 1.99413 2.56200 2.98475 0.30630 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.18356 1.86103 4.40770 0.43655 1.03920 1.09861 0.40547 22 0.13468 3.52699 2.81096 3.31154 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 23 3.21358 0.18050 3.80242 2.27677 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 24 3.10356 0.21033 3.70534 2.11856 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 25 2.35044 3.69855 0.16973 3.32371 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 26 3.78963 0.08072 4.31800 3.17913 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 27 3.78963 0.08072 4.31800 3.17913 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 28 3.78963 0.08072 4.31800 3.17913 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05412 4.40770 3.20644 1.46634 0.26236 1.09861 0.40547 29 3.73363 0.08518 4.26829 3.12947 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02540 4.37898 4.37898 1.46634 0.26236 0.47102 0.97913 30 0.14947 3.31251 3.22124 2.77243 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 31 2.97303 3.75078 0.13619 2.94368 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 32 2.65118 2.66319 2.80098 0.22445 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 33 3.78963 0.08072 4.31800 3.17913 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 34 3.38609 3.22674 3.92494 0.09791 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 35 3.47860 4.44226 0.06303 3.99186 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 36 0.06621 4.04370 3.69949 3.82609 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 37 1.89280 2.38982 2.37388 0.40859 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 38 1.36561 1.14727 2.40418 1.08787 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 39 0.75227 2.08287 1.80858 1.42609 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 40 1.39830 0.80294 2.46921 1.51267 43 c - - _ 1.38629 1.38629 1.38629 1.38629 0.24675 1.57755 4.40770 0.19616 1.72531 1.09861 0.40547 41 2.12489 1.83627 2.15370 0.50238 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 42 1.53470 2.32701 0.53155 2.31062 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 43 3.38609 3.22674 3.92494 0.09791 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 44 3.47860 4.44226 0.06303 3.99186 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 45 0.30414 2.34665 2.47843 2.49282 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 46 2.41563 0.31726 2.60266 2.22127 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05208 4.40770 3.25546 1.46634 0.26236 1.09861 0.40547 47 2.23173 2.62158 3.09673 0.25519 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02534 4.38097 4.38097 1.46634 0.26236 0.48972 0.94881 48 3.47860 4.44226 0.06303 3.99186 53 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 49 0.06621 4.04370 3.69949 3.82609 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 50 0.73403 2.31514 2.42553 1.10008 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 51 0.71993 2.25745 2.11932 1.24312 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07351 2.83556 4.40770 0.37349 1.16579 1.09861 0.40547 52 2.19763 2.65422 0.28410 2.71972 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 53 2.30766 3.66904 0.17678 3.29573 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 54 2.57368 2.61930 2.61099 0.25176 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 55 0.30851 2.77243 2.80395 1.94928 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12806 4.40770 2.22550 1.46634 0.26236 1.09861 0.40547 56 1.97287 1.85225 2.70440 0.45075 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.27471 2.55468 1.81714 0.31670 1.30397 0.20342 1.69247 57 1.51715 1.42888 2.12887 0.86248 64 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02856 4.26298 4.26298 1.46634 0.26236 0.15345 1.95012 58 2.46348 1.42385 3.01237 0.47016 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 59 2.21419 2.33578 3.00003 0.29540 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 60 3.78963 0.08072 4.31800 3.17913 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 61 3.38609 3.22674 3.92494 0.09791 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 62 3.47860 4.44226 0.06303 3.99186 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 63 0.06621 4.04370 3.69949 3.82609 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.17753 4.40770 1.89390 1.46634 0.26236 1.09861 0.40547 64 1.42965 2.14304 0.89063 1.45710 71 g - - _ 1.38629 1.38629 1.38629 1.38629 0.06632 4.25885 2.99518 1.46634 0.26236 1.29828 0.31883 65 1.88331 0.64003 2.69508 1.37398 72 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02853 4.26421 4.26421 1.46634 0.26236 0.15448 1.94391 66 2.02377 1.53015 2.24108 0.60698 73 U - - > 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 67 1.56239 2.09868 0.77661 1.57125 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 68 1.28373 1.93086 1.87564 0.85633 75 u - - : 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 69 1.42370 1.90104 0.97765 1.45427 76 g - - : 1.38629 1.38629 1.38629 1.38629 0.01241 4.39544 * 1.46634 0.26236 0.00000 * //