INFERNAL1/a [1.1.4 | Dec 2020] NAME Vimentin3 ACC RF00109 DESC Vimentin 3' UTR protein-binding region STATES 210 NODES 55 CLEN 67 W 137 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:16:19 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 4.123779 CKSUM 136239184 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.20 NC 35.70 EFP7GF -9.7710 0.71910 ECMLC 0.56169 -6.61204 3.44184 1600000 340192 0.003527 ECMGC 0.42484 -12.04842 0.37048 1600000 78236 0.005113 ECMLI 0.53445 -4.42432 5.41730 1600000 230937 0.005196 ECMGI 0.46442 -7.31707 3.32737 1600000 56105 0.007129 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 137 221 -7.647 -7.854 -0.033 -6.268 IL 1 1 2 1 4 4 30 139 224 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 29 138 223 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 5 30 137 222 -8.623 -0.013 -7.277 0.096 -1.069 -0.175 0.650 D 4 2 3 5 3 1 24 134 219 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 29 137 222 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 4 29 136 221 -8.623 -0.013 -7.277 -0.035 -0.462 -0.850 0.802 D 7 5 3 8 3 1 23 134 218 -6.174 -1.687 -0.566 IL 8 8 3 8 3 3 28 136 221 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 4 28 135 220 -8.623 -0.013 -7.277 -0.039 0.670 -1.553 0.131 D 10 8 3 11 3 0 22 133 218 -6.174 -1.687 -0.566 IL 11 11 3 11 3 3 27 135 220 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 3 27 134 219 -8.978 -0.012 -7.296 0.762 -1.329 0.508 -1.047 D 13 11 3 14 3 0 22 132 217 -5.620 -0.734 -1.403 IL 14 14 3 14 3 2 26 134 219 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 86 - a - - MR 15 14 3 17 3 3 26 133 218 -8.978 -0.012 -7.296 0.981 -0.984 -1.379 0.184 D 16 14 3 17 3 0 20 130 215 -6.390 -1.568 -0.620 IR 17 17 3 17 3 2 25 133 218 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 85 - U - - MR 18 17 3 20 3 3 26 132 217 -8.978 -0.012 -7.296 -0.592 -1.219 -0.236 1.041 D 19 17 3 20 3 0 19 130 214 -6.390 -1.568 -0.620 IR 20 20 3 20 3 2 24 132 217 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 84 - a - - MR 21 20 3 23 3 2 25 131 216 -8.978 -0.012 -7.296 0.552 -1.096 -0.250 0.292 D 22 20 3 23 3 0 18 129 213 -6.390 -1.568 -0.620 IR 23 23 3 23 3 2 23 131 216 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 83 - G - - MR 24 23 3 26 5 2 24 130 215 -7.683 -0.026 -7.499 -7.711 -8.602 -0.356 -1.559 1.259 -1.041 D 25 23 3 26 5 0 18 128 213 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 22 130 215 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 82 u a - - MP 27 26 3 31 6 3 24 129 214 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -1.069 -1.939 -0.484 1.350 -1.901 -2.794 1.365 -2.270 -2.008 0.912 -2.578 -0.562 2.019 -2.084 -0.113 -0.705 ML 28 26 3 31 6 1 19 127 212 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 19 126 211 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 15 123 207 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 21 128 213 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 21 128 213 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 81 a u - - MP 33 32 6 37 6 3 23 127 212 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -0.326 -2.688 -3.523 2.832 -3.959 -4.651 -0.158 -3.784 -3.455 1.074 -4.003 1.677 -0.341 -3.838 -1.862 -2.496 ML 34 32 6 37 6 1 19 125 210 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 19 125 210 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 15 121 206 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 20 126 211 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 20 126 211 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 80 u a - - MP 39 38 6 43 6 3 21 125 210 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -1.100 -2.029 -0.929 0.950 -1.952 -2.880 1.408 -2.335 -2.090 0.844 -2.659 -0.631 2.216 -2.173 0.422 -0.879 ML 40 38 6 43 6 1 18 123 208 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 18 123 208 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 14 120 205 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 19 124 209 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 19 124 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 79 c g - - MP 45 44 6 49 6 3 19 123 208 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -2.609 -2.690 -2.748 1.248 -2.386 -3.566 2.267 -2.862 -2.776 0.694 -1.397 -1.009 1.178 -2.903 1.387 -1.845 ML 46 44 6 49 6 1 17 122 206 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 17 122 206 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 14 119 204 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 18 122 207 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 18 122 207 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 78 u a - - MP 51 50 6 55 6 3 17 121 206 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -3.504 -3.388 -3.538 0.311 -2.797 -4.293 1.566 -3.383 -3.530 1.372 -4.019 -1.343 2.640 -3.719 0.692 -2.437 ML 52 50 6 55 6 1 16 120 205 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 16 121 205 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 14 119 204 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 16 120 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 16 120 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 77 u a - - MP 57 56 6 61 3 2 15 119 204 -6.109 -16.579 -0.021 -2.493 -2.515 -2.646 1.323 -2.414 -3.501 1.433 -2.826 -0.283 1.111 -3.232 -0.777 2.317 -2.800 -0.366 -1.760 ML 58 56 6 61 3 1 15 120 205 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 3 1 15 120 205 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 D 60 56 6 61 3 0 14 119 204 -1.585 -1.585 -1.585 IL 61 61 5 61 3 1 15 121 206 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 62 62 6 62 2 1 14 118 203 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 63 62 6 64 114 0 13 117 202 [ BEGL 16 ] - - - - - - S 64 63 1 65 4 0 0 85 170 -0.034 -7.228 -6.636 -7.276 [ MATP 17 ] 11 38 A U - - MP 65 64 1 69 6 2 2 85 170 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -5.060 -3.844 -4.890 3.781 -5.991 -7.235 -1.610 -4.847 -4.847 -0.310 -5.450 -1.171 -2.007 -6.142 -3.539 -3.730 ML 66 64 1 69 6 1 1 83 168 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 1 69 6 1 1 83 167 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 1 69 6 0 0 79 164 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 84 169 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 84 169 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 37 A U - - MP 71 70 6 75 6 2 2 83 168 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -4.540 -3.319 -4.591 3.611 -5.974 -6.851 -1.576 -4.663 -4.373 0.293 -4.996 0.462 -1.730 -5.578 -3.465 -3.336 ML 72 70 6 75 6 1 1 81 166 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 81 165 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 78 163 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 82 167 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 82 167 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 36 A U - - MP 77 76 6 81 4 2 2 81 166 -7.647 -7.854 -0.033 -6.268 -4.338 -3.128 -4.456 3.462 -5.748 -6.570 -1.363 -4.556 -4.183 0.517 -4.802 1.133 -1.513 -5.330 -3.247 -3.170 ML 78 76 6 81 4 1 1 80 165 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 4 1 1 78 163 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 80 76 6 81 4 0 0 77 162 -4.568 -4.250 -2.265 -0.520 IL 81 81 5 81 4 1 1 81 166 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 82 82 6 82 3 1 1 81 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - g - - - ML 83 82 6 85 3 1 1 79 164 -8.623 -0.453 -1.906 0.282 -0.794 0.373 -0.133 D 84 82 6 85 3 0 0 75 160 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 81 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - a - - - ML 86 85 3 88 3 1 1 79 164 -8.188 -0.081 -4.290 0.675 -0.921 -0.690 0.328 D 87 85 3 88 3 0 0 67 151 -8.437 -3.950 -0.101 IL 88 88 3 88 3 1 1 80 165 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - u - - - ML 89 88 3 91 3 1 1 79 164 -1.240 -0.817 -6.779 0.230 -0.926 -1.230 0.907 D 90 88 3 91 3 0 0 54 139 -8.569 -0.515 -1.748 IL 91 91 3 91 3 1 1 82 166 -0.313 -2.405 -7.283 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - A - - - ML 92 91 3 94 3 1 1 20 38 -8.532 -0.014 -7.186 1.706 -2.373 -2.276 -1.565 D 93 91 3 94 3 0 0 19 37 -7.092 -2.605 -0.272 IL 94 94 3 94 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - A - - - ML 95 94 3 97 3 1 1 19 37 -8.532 -0.014 -7.186 1.461 -1.741 -1.786 -0.603 D 96 94 3 97 3 0 0 18 36 -7.092 -2.605 -0.272 IL 97 97 3 97 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - A - - - ML 98 97 3 100 3 1 1 17 36 -2.558 -0.483 -3.124 1.879 -3.507 -3.034 -3.165 D 99 97 3 100 3 0 0 16 34 -7.092 -0.655 -1.484 IL 100 100 3 100 3 1 1 18 36 -2.097 -0.453 -4.797 0.000 0.000 0.000 0.000 [ MATL 26 ] 32 - C - - - ML 101 100 3 103 3 1 1 16 34 -8.469 -0.014 -7.123 -1.967 1.654 -2.189 -1.406 D 102 100 3 103 3 0 0 15 33 -7.483 -2.996 -0.202 IL 103 103 3 103 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 33 - A - - - ML 104 103 3 106 3 1 1 14 33 -8.469 -0.014 -7.123 1.868 -3.385 -2.922 -3.031 D 105 103 3 106 3 0 0 14 32 -7.483 -2.996 -0.202 IL 106 106 3 106 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 34 - G - - - ML 107 106 3 109 3 1 1 13 31 -8.469 -0.014 -7.123 -2.600 -3.950 1.876 -3.325 D 108 106 3 109 3 0 0 12 31 -7.483 -0.470 -1.875 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 35 - C - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 -3.294 1.869 -4.075 -2.434 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 114 63 1 115 3 0 1 49 69 -8.623 -0.013 -7.277 IL 115 115 2 115 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 39 - C - - - ML 116 115 2 118 3 1 2 49 69 -8.623 -0.013 -7.277 -0.223 1.242 -2.115 -0.870 D 117 115 2 118 3 0 0 48 67 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 40 - A - - - ML 119 118 3 121 3 1 2 48 67 -8.623 -0.013 -7.277 1.893 -3.678 -3.192 -3.351 D 120 118 3 121 3 0 0 47 66 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 41 - A - - - ML 122 121 3 124 5 1 1 47 66 -7.683 -0.061 -5.100 -7.711 -8.602 1.893 -3.678 -3.192 -3.351 D 123 121 3 124 5 0 0 46 65 -4.959 -0.803 -4.221 -2.596 -2.508 IL 124 124 3 124 5 1 1 47 67 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 42 76 G C - - MP 125 124 3 129 6 2 2 46 65 -9.396 -9.335 -0.017 -8.111 -8.391 -8.786 -4.924 -3.317 -5.001 -0.030 -5.594 -4.883 -0.985 -5.384 -4.597 3.587 0.128 -1.045 -1.306 -4.603 -2.984 -3.938 ML 126 124 3 129 6 1 1 45 64 -6.540 -6.886 -0.966 -1.295 -6.736 -4.265 0.171 -0.704 0.467 -0.188 MR 127 124 3 129 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 3 129 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 43 75 U G - - MP 131 130 6 135 6 2 2 44 63 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -4.985 -5.065 -4.560 -1.314 -3.127 -4.873 1.181 -3.970 -4.619 -1.204 -4.851 -3.183 1.718 -4.978 3.167 -3.453 ML 132 130 6 135 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 43 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 44 74 G C - - MP 137 136 6 141 6 2 2 42 61 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -5.995 -3.713 -6.339 -0.696 -6.956 -5.156 -2.012 -6.582 -5.058 3.835 -5.326 -1.486 -2.374 -5.261 -4.138 -5.199 ML 138 136 6 141 6 1 1 41 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 41 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 45 73 C G - - MP 143 142 6 147 4 2 2 40 59 -7.647 -7.854 -0.033 -6.268 -6.016 -6.045 -5.436 -2.214 -3.911 -5.653 3.832 -4.875 -5.578 -2.114 -5.636 -4.063 -0.598 -5.982 -1.699 -4.385 ML 144 142 6 147 4 1 1 40 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 4 1 1 40 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 146 142 6 147 4 0 0 39 59 -4.568 -4.250 -2.265 -0.520 IL 147 147 5 147 4 1 1 42 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 148 148 6 148 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 46 - C - - - ML 149 148 6 151 5 1 1 38 57 -7.683 -0.026 -7.499 -7.711 -8.602 -3.294 1.869 -4.075 -2.434 D 150 148 6 151 5 0 0 36 56 -4.959 -0.803 -4.221 -2.596 -2.508 IL 151 151 3 151 5 1 1 38 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 47 72 U A - - MP 152 151 3 156 6 2 2 37 56 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -5.972 -5.817 -5.598 -2.038 -4.237 -5.995 0.091 -5.030 -5.593 -1.966 -5.881 -3.679 3.789 -6.022 -1.870 -4.129 ML 153 151 3 156 6 1 1 35 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 3 156 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 3 156 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 36 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 48 71 U G - - MP 158 157 6 162 6 2 2 35 54 -4.930 -9.355 -0.064 -8.131 -8.411 -8.806 -5.305 -5.274 -4.756 -1.526 -3.239 -5.016 1.058 -4.092 -4.812 -1.523 -4.997 -3.262 0.079 -5.277 3.537 -3.637 ML 159 157 6 162 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 34 53 -3.045 -3.308 -0.508 -4.963 -5.739 -5.400 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 50 70 u a - - MP 164 163 6 168 4 2 2 33 52 -2.277 -2.112 -0.864 -6.268 -3.126 -3.209 -3.197 0.174 -2.616 -3.938 1.446 -3.181 -3.228 0.251 -3.724 -1.490 2.251 -3.388 1.721 0.675 ML 165 163 6 168 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 30 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 29 49 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 32 51 -1.916 -2.156 -1.004 -6.383 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 31 50 -1.602 -1.273 -1.961 0.000 0.000 0.000 0.000 [ MATL 43 ] 53 - C - - - ML 170 169 6 172 5 1 1 29 48 -7.460 -0.030 -7.275 -7.487 -8.379 -1.368 1.252 -2.235 0.026 D 171 169 6 172 5 0 0 28 47 -6.154 -0.298 -5.415 -3.790 -3.703 IL 172 172 3 172 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 54 67 U A - - MP 173 172 3 177 6 2 2 28 47 -9.415 -9.355 -0.017 -8.131 -8.411 -8.806 -4.471 -4.487 -4.249 -0.734 -3.031 -4.724 1.304 -3.801 -4.272 -0.590 -4.608 -2.524 3.037 -4.570 1.705 -3.132 ML 174 172 3 177 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 3 177 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 3 177 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 55 66 g c - - MP 179 178 6 183 4 2 2 26 45 -7.647 -7.854 -0.033 -6.268 -3.377 -0.283 -3.445 0.942 -4.015 -1.706 0.244 -3.907 -3.529 2.927 -3.817 1.064 -0.020 -3.317 -1.606 -2.458 ML 180 178 6 183 4 1 1 26 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 182 178 6 183 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 183 183 5 183 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 184 184 6 184 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 56 - C - - - ML 185 184 6 187 3 1 1 23 42 -8.623 -0.013 -7.277 -3.294 1.869 -4.075 -2.434 D 186 184 6 187 3 0 0 22 41 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 57 - A - - - ML 188 187 3 190 3 1 1 22 41 -8.623 -0.013 -7.277 1.893 -3.678 -3.192 -3.351 D 189 187 3 190 3 0 0 21 40 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - g - - - ML 191 190 3 193 3 1 1 21 40 -8.623 -0.013 -7.277 -0.717 -0.747 0.969 -0.255 D 192 190 3 193 3 0 0 20 39 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 59 - U - - - ML 194 193 3 196 3 1 1 20 39 -2.567 -0.334 -4.726 -0.655 -1.543 -2.095 1.479 D 195 193 3 196 3 0 0 17 36 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 40 -1.422 -0.742 -5.128 0.000 0.000 0.000 0.000 [ MATL 50 ] 62 - U - - - ML 197 196 3 199 3 1 1 16 34 -8.577 -0.013 -7.231 -0.499 -0.691 -0.606 1.011 D 198 196 3 199 3 0 0 15 34 -6.718 -0.924 -1.109 IL 199 199 3 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 63 - u - - - ML 200 199 3 202 3 1 1 14 33 -8.623 -0.013 -7.277 0.133 -0.223 -1.353 0.727 D 201 199 3 202 3 0 0 15 33 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 64 - u - - - ML 203 202 3 205 3 1 1 13 31 -8.623 -0.013 -7.277 -0.060 -0.345 -1.449 0.917 D 204 202 3 205 3 0 0 13 32 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 65 - u - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -0.212 -0.050 -1.497 0.861 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 54 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Vimentin3 ACC RF00109 DESC Vimentin 3' UTR protein-binding region LENG 67 MAXL 174 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:16:19 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 19 EFFN 5.997803 CKSUM 136239184 STATS LOCAL MSV -7.8964 0.71910 STATS LOCAL VITERBI -9.0547 0.71910 STATS LOCAL FORWARD -3.7125 0.71910 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23510 1.55830 1.51983 1.27314 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 0.00000 * 1 1.33494 2.26325 1.48480 0.90075 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 2 1.42709 1.73775 2.00994 0.79832 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 3 1.44469 0.84212 2.66780 1.33188 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 4 0.81961 2.44663 0.96807 2.37518 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 5 1.34131 1.69244 1.77283 0.95561 5 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 6 0.50821 3.46151 1.11957 3.20327 6 A - - ( 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 7 1.63173 1.67884 1.82047 0.78555 7 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 8 1.74785 1.06916 1.94611 1.07961 8 c - - ( 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 9 2.60776 1.77410 1.68179 0.56103 9 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 10 1.67658 1.78981 1.49459 0.86357 10 u - - ( 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 11 0.08415 4.28935 2.97524 4.13803 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 12 0.19402 4.19185 1.96393 3.86647 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 13 0.28733 4.06206 1.56742 3.73212 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 14 1.19384 1.98692 1.07381 1.52269 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.35691 4.39621 1.24536 1.46634 0.26236 1.09861 0.40547 15 0.87767 2.13086 1.90920 1.14786 15 a - - _ 1.38629 1.38629 1.38629 1.38629 0.08318 4.07392 2.76776 1.46634 0.26236 3.23302 0.04024 16 1.22549 2.17203 2.38570 0.69232 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.67465 0.74900 4.02705 1.96165 0.15155 0.29824 1.35526 17 0.15267 3.34139 3.30644 2.66565 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32955 4.32955 1.46634 0.26236 2.10815 0.12950 18 0.30703 2.84914 2.90493 1.88566 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02670 4.32955 4.32955 1.46634 0.26236 2.10815 0.12950 19 0.05096 4.29841 3.93915 4.09649 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.38320 1.65739 2.05816 0.13290 2.08388 0.27829 1.41501 20 3.22671 0.15879 3.10636 2.77457 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02799 4.28290 4.28290 1.46634 0.26236 2.45897 0.08940 21 0.05560 4.21331 3.85868 4.00704 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02799 4.28290 4.28290 1.46634 0.26236 2.45897 0.08940 22 3.63161 4.60975 0.05367 4.14619 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02799 4.28290 4.28290 1.46634 0.26236 0.18759 1.76583 23 4.17822 0.05543 4.65162 3.53860 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 24 3.89679 2.69651 3.82012 0.11617 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 25 4.01987 2.84447 3.94452 0.10035 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 26 4.28527 3.37018 4.05675 0.06770 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 27 1.59539 0.42579 3.21904 2.26413 39 C - - , 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 28 0.04518 4.41678 4.05169 4.21923 40 A - - , 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 29 0.04518 4.41678 4.05169 4.21923 41 A - - , 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 30 2.91134 3.71840 0.11248 3.58585 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 31 3.72960 2.15590 3.64976 0.18128 43 U - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 32 3.34617 4.29732 0.06536 4.23737 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 33 4.41382 0.06861 4.34928 3.18732 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 34 4.17822 0.05543 4.65162 3.53860 46 C - - - 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 35 4.55820 3.21854 4.45211 0.06416 47 U - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 36 3.85629 2.23186 3.74389 0.16504 48 U - - < 1.38629 1.38629 1.38629 1.38629 0.09205 2.58212 4.39621 0.29915 1.35267 1.09861 0.40547 37 2.86748 1.92560 2.71529 0.31309 50 U - - < 1.38629 1.38629 1.38629 1.38629 0.50105 1.53358 1.72405 0.35262 1.21349 1.09861 0.40547 38 2.64144 0.43183 3.27611 1.42028 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.03000 4.21467 4.21467 1.46634 0.26236 0.12945 2.10847 39 3.52817 2.07977 3.36015 0.20955 54 U - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 40 1.74210 2.44941 0.41266 2.56895 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 41 4.17822 0.05543 4.65162 3.53860 56 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 42 0.04518 4.41678 4.05169 4.21923 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 43 2.08509 1.94687 0.61733 1.64197 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 44 1.93713 2.74466 3.16521 0.28847 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.26615 1.67039 3.09006 0.54182 0.87152 1.09861 0.40547 45 1.83644 1.93274 1.80841 0.63120 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02582 4.36248 4.36248 1.46634 0.26236 0.43290 1.04591 46 1.29421 1.53978 2.46499 0.85226 63 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 47 1.44853 1.64256 2.54943 0.70628 64 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 48 1.57719 1.39889 2.59500 0.75093 65 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 49 2.80942 0.51842 2.51771 1.33312 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 50 0.54149 3.48959 1.05256 3.25549 67 A - - > 1.38629 1.38629 1.38629 1.38629 0.38338 1.18377 4.39621 0.40951 1.09057 1.09861 0.40547 51 1.04198 2.88322 0.91922 1.64786 70 g - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 52 2.83999 3.92242 0.11220 3.57845 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 53 0.07517 4.61456 3.03718 4.23075 72 A - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 54 3.47518 4.53948 0.05721 4.27070 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 55 4.43486 0.07611 4.22966 3.06036 74 C - - > 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 56 1.54865 3.86914 0.30217 3.59810 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.05336 4.39621 3.22801 1.46634 0.26236 1.09861 0.40547 57 3.95795 0.21587 2.22386 2.70504 76 C - - > 1.38629 1.38629 1.38629 1.38629 0.02567 4.36852 4.36852 1.46634 0.26236 0.48357 0.95862 58 0.81388 1.94688 1.60981 1.54074 77 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 59 0.76881 1.76873 1.29857 2.37551 78 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 60 1.91899 2.30250 0.58554 1.62743 79 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 61 0.96427 1.98814 1.24774 1.63662 80 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 62 2.38988 2.40713 3.24718 0.24923 81 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 63 1.07833 1.93932 1.33181 1.37818 82 a - - ) 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 64 1.72435 2.61275 0.43586 2.28599 83 G - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 65 0.97688 2.27853 1.55272 1.17310 84 a - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 66 1.94739 2.42711 1.52744 0.59426 85 U - - : 1.38629 1.38629 1.38629 1.38629 0.02496 4.39621 4.39621 1.46634 0.26236 1.09861 0.40547 67 0.64357 2.18381 2.52023 1.26749 86 A - - : 1.38629 1.38629 1.38629 1.38629 0.01256 4.38381 * 1.46634 0.26236 0.00000 * //