INFERNAL1/a [1.1.4 | Dec 2020] NAME rydB ACC RF00118 DESC rydB RNA STATES 195 NODES 56 CLEN 62 W 90 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:16:48 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.771973 CKSUM 4101640097 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 59.20 NC 37.10 EFP7GF -11.6435 0.71915 ECMLC 0.71483 -5.25884 2.42016 1600000 290479 0.004131 ECMGC 0.46816 -16.82205 -5.41879 1600000 83283 0.004803 ECMLI 0.66075 -4.03185 3.73111 1600000 202687 0.005920 ECMGI 0.50337 -12.64365 -2.54905 1600000 64397 0.006211 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 90 124 -7.257 -7.464 -0.408 -2.094 IL 1 1 2 1 4 3 26 92 126 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 26 92 126 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 2 25 90 124 -3.444 -0.291 -3.458 -1.494 -2.700 1.703 -2.086 D 4 2 3 5 3 1 23 89 123 -2.056 -0.731 -2.670 IL 5 5 3 5 3 2 26 90 124 -2.590 -0.324 -4.828 0.000 0.000 0.000 0.000 [ MATR 2 ] - 69 - u - - MR 6 5 3 8 3 3 27 89 123 -8.530 -0.017 -6.847 -0.866 0.597 -1.667 0.700 D 7 5 3 8 3 0 20 86 120 -7.118 -2.296 -0.342 IR 8 8 3 8 3 2 25 89 123 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 68 - u - - MR 9 8 3 11 3 3 26 88 122 -8.530 -0.017 -6.847 0.171 -0.068 -1.123 0.547 D 10 8 3 11 3 0 20 85 119 -7.118 -2.296 -0.342 IR 11 11 3 11 3 2 25 88 122 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 67 - u - - MR 12 11 3 14 3 3 25 87 121 -8.530 -0.017 -6.847 0.424 -0.928 -1.181 0.758 D 13 11 3 14 3 0 20 84 118 -7.118 -2.296 -0.342 IR 14 14 3 14 3 2 24 87 121 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 66 - a - - MR 15 14 3 17 3 2 25 86 120 -8.530 -0.017 -6.847 0.267 0.055 -0.098 -0.280 D 16 14 3 17 3 0 19 84 118 -7.118 -2.296 -0.342 IR 17 17 3 17 3 2 24 86 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 65 - A - - MR 18 17 3 20 3 2 24 85 119 -8.530 -0.017 -6.847 1.353 -0.850 -1.429 -0.944 D 19 17 3 20 3 0 19 83 117 -7.118 -0.737 -1.348 IR 20 20 3 20 3 1 22 85 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 64 - a - - MR 21 20 3 23 3 2 23 84 118 -8.627 -0.015 -6.945 0.324 -0.211 -0.602 0.293 D 22 20 3 23 3 0 17 82 116 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 22 84 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 63 - a - - MR 24 23 3 26 3 2 23 83 117 -8.627 -0.015 -6.945 0.464 -0.175 -0.060 -0.366 D 25 23 3 26 3 0 17 81 115 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 21 83 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 62 - c - - MR 27 26 3 29 5 1 22 82 116 -7.349 -0.033 -7.165 -7.377 -8.268 0.259 0.259 -1.190 0.224 D 28 26 3 29 5 0 16 80 114 -5.352 -0.707 -2.978 -4.409 -2.404 IR 29 29 3 29 5 1 20 82 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 3 61 C G - - MP 30 29 3 34 6 2 23 81 115 -9.234 -9.173 -0.019 -7.949 -8.229 -8.624 -4.255 -4.211 -4.014 -0.380 -2.757 -4.484 3.248 -3.532 -4.029 -0.176 -4.358 -2.160 1.646 -4.336 -0.417 -2.860 ML 31 29 3 34 6 1 18 79 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 3 34 6 1 17 79 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 3 34 6 0 14 76 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 19 80 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 19 80 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 4 60 C G - - MP 36 35 6 40 6 2 22 79 113 -9.234 -9.173 -0.019 -7.949 -8.229 -8.624 -5.192 -5.152 -4.769 -1.338 -3.361 -5.095 3.709 -4.235 -4.847 -1.172 -5.031 -3.114 0.079 -5.216 -1.090 -3.667 ML 37 35 6 40 6 1 17 77 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 6 1 17 77 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 39 35 6 40 6 0 13 74 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 18 78 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 19 78 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 5 59 C G - - MP 42 41 6 46 6 2 20 77 111 -9.234 -9.173 -0.019 -7.949 -8.229 -8.624 -5.192 -5.152 -4.769 -1.338 -3.361 -5.095 3.709 -4.235 -4.847 -1.172 -5.031 -3.114 0.079 -5.216 -1.090 -3.667 ML 43 41 6 46 6 1 17 75 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 15 75 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 13 73 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 18 76 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 18 76 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 6 58 C G - - MP 48 47 6 52 4 2 18 75 109 -2.862 -7.464 -0.252 -5.879 -5.192 -5.152 -4.769 -1.338 -3.361 -5.095 3.709 -4.235 -4.847 -1.172 -5.031 -3.114 0.079 -5.216 -1.090 -3.667 ML 49 47 6 52 4 1 16 74 108 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 4 1 14 73 107 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 51 47 6 52 4 0 13 72 106 -4.568 -4.250 -2.265 -0.520 IL 52 52 5 52 4 1 17 74 108 -2.460 -3.144 -0.546 -5.629 0.000 0.000 0.000 0.000 IR 53 53 6 53 3 1 17 74 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 8 - U - - - ML 54 53 6 56 3 1 17 72 106 -8.254 -0.017 -6.908 -2.035 -1.938 -2.791 1.744 D 55 53 6 56 3 0 12 70 104 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 73 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 9 - U - - - ML 57 56 3 59 3 1 16 71 105 -8.254 -0.017 -6.908 -0.838 -1.144 -0.789 1.269 D 58 56 3 59 3 0 12 69 103 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 15 72 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 10 - c - - - ML 60 59 3 62 3 1 15 70 104 -8.254 -0.017 -6.908 -0.022 0.555 -0.432 -0.313 D 61 59 3 62 3 0 11 68 102 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 15 71 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 11 - a - - - ML 63 62 3 65 3 1 14 69 103 -8.254 -0.017 -6.908 0.946 0.009 -1.307 -0.593 D 64 62 3 65 3 0 11 68 101 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 70 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 12 - A - - - ML 66 65 3 68 3 1 13 68 102 -8.254 -0.017 -6.908 1.819 -2.958 -2.533 -2.561 D 67 65 3 68 3 0 10 67 101 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 69 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 13 - G - - - ML 69 68 3 71 3 1 12 67 101 -8.254 -0.017 -6.908 -2.185 -3.489 1.830 -2.874 D 70 68 3 71 3 0 10 66 100 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 68 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 14 - A - - - ML 72 71 3 74 3 1 11 66 100 -8.627 -0.015 -6.945 1.819 -2.958 -2.533 -2.561 D 73 71 3 74 3 0 9 65 99 -5.620 -0.734 -1.403 IL 74 74 3 74 3 1 11 67 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 57 - U - - MR 75 74 3 77 3 1 10 65 99 -8.627 -0.015 -6.945 -0.376 -1.153 -1.626 1.296 D 76 74 3 77 3 0 9 64 98 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 10 66 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 56 - g - - MR 78 77 3 80 2 1 9 64 98 -8.698 -0.003 0.431 -1.769 0.941 -1.191 D 79 77 3 80 2 0 8 64 98 -4.432 -0.068 IR 80 80 3 80 2 1 9 65 99 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 23 ] - - - - - - B 81 80 3 82 138 0 8 63 97 [ BEGL 24 ] - - - - - - S 82 81 1 83 4 0 0 45 79 -0.040 -6.998 -6.405 -7.045 [ MATP 25 ] 15 37 G U - - MP 83 82 1 87 6 2 2 45 79 -9.234 -9.173 -0.019 -7.949 -8.229 -8.624 -3.990 -2.670 -4.180 0.875 -5.191 -5.958 -0.738 -4.164 -3.765 0.850 -4.312 3.387 -1.080 -5.051 -2.676 -2.818 ML 84 82 1 87 6 1 1 44 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 1 87 6 1 1 44 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 1 87 6 0 0 41 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 45 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 45 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 16 36 C G - - MP 89 88 6 93 6 2 2 43 77 -9.234 -9.173 -0.019 -7.949 -8.229 -8.624 -5.192 -5.152 -4.769 -1.338 -3.361 -5.095 3.709 -4.235 -4.847 -1.172 -5.031 -3.114 0.079 -5.216 -1.090 -3.667 ML 90 88 6 93 6 1 1 42 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 42 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 40 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 43 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 43 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 35 U A - - MP 95 94 6 99 4 2 2 41 75 -7.257 -7.464 -0.043 -5.879 -4.919 -4.755 -4.672 -1.006 -3.472 -5.167 0.865 -4.213 -4.672 -0.841 -5.008 -2.632 3.588 -5.036 -1.131 -3.409 ML 96 94 6 99 4 1 1 41 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 40 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 39 73 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 42 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 41 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 18 - A - - - ML 101 100 6 103 3 1 1 39 73 -8.254 -0.017 -6.908 1.819 -2.958 -2.533 -2.561 D 102 100 6 103 3 0 0 37 71 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 40 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 19 - A - - - ML 104 103 3 106 3 1 1 38 72 -8.254 -0.017 -6.908 1.354 -0.774 -1.494 -0.988 D 105 103 3 106 3 0 0 36 70 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 39 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 20 - g - - - ML 107 106 3 109 3 1 1 37 71 -8.254 -0.017 -6.908 0.063 -0.692 0.758 -0.631 D 108 106 3 109 3 0 0 35 69 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 38 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 21 - c - - - ML 110 109 3 112 3 1 1 36 70 -8.254 -0.017 -6.908 0.379 0.677 -1.411 -0.465 D 111 109 3 112 3 0 0 34 68 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 37 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 22 - C - - - ML 113 112 3 115 3 1 1 35 69 -8.254 -0.519 -1.742 -2.452 1.771 -3.281 -1.726 D 114 112 3 115 3 0 0 33 67 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 37 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 23 - c - - - ML 116 115 3 118 3 1 1 35 69 -1.628 -0.589 -6.413 -0.645 0.835 -1.425 0.268 D 117 115 3 118 3 0 0 26 60 -8.273 -0.253 -2.665 IL 118 118 3 118 3 1 1 36 70 -0.783 -1.321 -5.747 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - a - - - ML 119 118 3 121 3 1 1 19 37 -8.254 -0.017 -6.908 0.580 -0.344 -0.554 0.050 D 120 118 3 121 3 0 0 18 37 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - a - - - ML 122 121 3 124 3 1 1 17 36 -8.254 -0.017 -6.908 0.700 -0.607 -0.335 -0.111 D 123 121 3 124 3 0 0 17 36 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - u - - - ML 125 124 3 127 3 1 1 16 35 -8.254 -0.017 -6.908 0.265 -0.896 -0.356 0.565 D 126 124 3 127 3 0 0 16 34 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - g - - - ML 128 127 3 130 3 1 1 15 33 -8.254 -0.017 -6.908 0.187 -0.664 0.645 -0.584 D 129 127 3 130 3 0 0 15 33 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - U - - - ML 131 130 3 133 3 1 1 13 31 -8.254 -0.017 -6.908 -0.415 -0.537 -1.481 1.139 D 132 130 3 133 3 0 0 13 32 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - G - - - ML 134 133 3 136 2 1 1 1 1 * 0.000 -2.185 -3.489 1.830 -2.874 D 135 133 3 136 2 0 0 0 0 * 0.000 IL 136 136 3 136 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 137 136 3 -1 0 0 0 0 0 [ BEGR 41 ] - - - - - - S 138 81 1 139 3 0 0 32 51 -8.254 -0.017 -6.908 IL 139 139 2 139 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - G - - - ML 140 139 2 142 5 1 1 32 51 -7.349 -0.033 -7.165 -7.377 -8.268 -0.896 -1.711 1.282 -0.464 D 141 139 2 142 5 0 0 31 50 -4.959 -0.803 -4.221 -2.596 -2.508 IL 142 142 3 142 5 1 1 33 52 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 39 55 C G - - MP 143 142 3 147 6 2 2 31 50 -9.234 -9.173 -0.019 -7.949 -8.229 -8.624 -5.192 -5.152 -4.769 -1.338 -3.361 -5.095 3.709 -4.235 -4.847 -1.172 -5.031 -3.114 0.079 -5.216 -1.090 -3.667 ML 144 142 3 147 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 3 147 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 3 147 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 40 54 C G - - MP 149 148 6 153 6 2 2 29 48 -9.234 -9.173 -0.019 -7.949 -8.229 -8.624 -5.192 -5.152 -4.769 -1.338 -3.361 -5.095 3.709 -4.235 -4.847 -1.172 -5.031 -3.114 0.079 -5.216 -1.090 -3.667 ML 150 148 6 153 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 41 53 G C - - MP 155 154 6 159 6 2 2 27 46 -9.234 -9.173 -0.019 -7.949 -8.229 -8.624 -5.308 -3.369 -5.483 -0.191 -6.024 -4.907 -1.247 -5.749 -4.677 3.749 -4.978 -1.095 -1.619 -4.833 -3.319 -4.351 ML 156 154 6 159 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 26 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 42 52 G C - - MP 161 160 6 165 4 2 2 25 44 -7.257 -7.464 -0.043 -5.879 -5.308 -3.369 -5.483 -0.191 -6.024 -4.907 -1.247 -5.749 -4.677 3.749 -4.978 -1.095 -1.619 -4.833 -3.319 -4.351 ML 162 160 6 165 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 25 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 24 44 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 43 - A - - - ML 167 166 6 169 3 1 1 23 41 -8.627 -0.015 -6.945 1.819 -2.958 -2.533 -2.561 D 168 166 6 169 3 0 0 21 40 -5.620 -0.734 -1.403 IL 169 169 3 169 3 1 1 23 42 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 51 - G - - MR 170 169 3 172 5 1 1 22 40 -7.349 -0.033 -7.165 -7.377 -8.268 -2.185 -3.489 1.830 -2.874 D 171 169 3 172 5 0 0 21 40 -5.352 -0.707 -2.978 -4.409 -2.404 IR 172 172 3 172 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 44 50 G C - - MP 173 172 3 177 4 2 2 20 39 -7.257 -7.464 -0.043 -5.879 -5.308 -3.369 -5.483 -0.191 -6.024 -4.907 -1.247 -5.749 -4.677 3.749 -4.978 -1.095 -1.619 -4.833 -3.319 -4.351 ML 174 172 3 177 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 175 172 3 177 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 176 172 3 177 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 177 177 5 177 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 178 178 6 178 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 45 - A - - - ML 179 178 6 181 3 1 1 17 36 -8.254 -0.017 -6.908 1.819 -2.958 -2.533 -2.561 D 180 178 6 181 3 0 0 17 36 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 46 - U - - - ML 182 181 3 184 3 1 1 16 35 -8.254 -0.017 -6.908 -2.035 -1.938 -2.791 1.744 D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 47 - A - - - ML 185 184 3 187 3 1 1 15 33 -8.254 -0.017 -6.908 1.819 -2.958 -2.533 -2.561 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 48 - A - - - ML 188 187 3 190 3 1 1 13 31 -8.254 -0.017 -6.908 1.819 -2.958 -2.533 -2.561 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 49 - G - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 -2.185 -3.489 1.830 -2.874 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME rydB ACC RF00118 DESC rydB RNA LENG 62 MAXL 142 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:16:48 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 7 EFFN 3.448730 CKSUM 4101640097 STATS LOCAL MSV -8.0350 0.71915 STATS LOCAL VITERBI -8.6457 0.71915 STATS LOCAL FORWARD -3.8323 0.71915 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36282 1.41074 1.17896 1.64765 1.38629 1.38629 1.38629 1.38629 0.18246 4.16432 1.88885 1.46634 0.26236 0.00000 * 1 2.66427 3.53714 0.15458 3.11266 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.14191 2.16873 4.01848 0.28943 1.38105 0.18689 1.76921 2 2.96196 0.45033 2.73862 1.40160 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 3 3.68874 0.14684 3.51928 2.50168 4 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 4 3.68906 0.14682 3.51945 2.50174 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 5 3.68806 0.14689 3.51891 2.50155 6 C - - ( 1.38629 1.38629 1.38629 1.38629 0.18246 1.88885 4.16432 0.19417 1.73452 1.09861 0.40547 6 3.05762 2.94783 3.58938 0.13590 8 U - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 7 2.09896 2.29886 1.96691 0.45074 9 U - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 8 1.42776 0.95203 1.68628 1.66606 10 c - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 9 0.68873 1.35423 2.40301 1.90252 11 A - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 10 0.09403 3.70734 3.38842 3.45963 12 A - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 11 3.16481 4.09804 0.08820 3.66547 13 G - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 12 0.09403 3.70734 3.38842 3.45963 14 A - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 13 2.15209 3.36385 0.21296 3.19486 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 14 3.70147 0.14602 3.52610 2.50408 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 15 3.54936 2.34997 3.35578 0.17316 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 16 0.09403 3.70734 3.38842 3.45963 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 17 0.39991 1.94466 2.55917 2.21446 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 18 1.37301 1.88405 0.80251 1.92084 20 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 19 1.11515 0.85962 2.48340 1.79966 21 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 20 3.40760 0.11642 3.96979 2.84895 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.43211 4.16432 1.09266 1.46634 0.26236 1.09861 0.40547 21 1.93016 0.74362 2.48406 1.21712 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.53056 0.94449 3.77897 1.16993 0.37163 0.08864 2.46715 22 0.96801 1.62381 1.78398 1.36631 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 23 0.88093 1.82162 1.62146 1.48620 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 24 1.19890 2.06448 1.63106 0.97852 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 25 1.27524 1.86168 0.88527 1.87978 32 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 26 1.72540 1.79194 2.51449 0.55450 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 27 3.16481 4.09804 0.08820 3.66547 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 28 0.19727 3.54206 2.18456 3.28206 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 29 2.77822 3.67800 0.12695 3.44833 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 30 3.36553 2.28465 3.13536 0.19825 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 31 2.14918 2.72657 0.43640 1.76246 38 G - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 32 3.71555 0.14512 3.53359 2.50670 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 33 3.70606 0.14572 3.52855 2.50494 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 34 2.89642 3.70742 0.11182 3.64831 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 35 2.89454 3.70479 0.11211 3.64474 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 36 0.09403 3.70734 3.38842 3.45963 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 37 2.89510 3.70557 0.11203 3.64580 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 38 0.09403 3.70734 3.38842 3.45963 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 39 3.05762 2.94783 3.58938 0.13590 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 40 0.09403 3.70734 3.38842 3.45963 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 41 0.09403 3.70734 3.38842 3.45963 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 42 3.16481 4.09804 0.08820 3.66547 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 43 3.84860 0.13325 3.56334 2.58896 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 44 3.16481 4.09804 0.08820 3.66547 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 45 3.82339 0.13466 3.55127 2.58436 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 46 3.82924 0.13433 3.55408 2.58544 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 47 2.78913 3.69518 0.12501 3.46765 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 48 2.79218 3.69999 0.12447 3.47307 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 49 1.07954 2.76204 0.68563 2.37184 56 G - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 50 1.69825 2.30633 2.64901 0.43595 57 U - - , 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 51 2.78358 3.68643 0.12599 3.45780 58 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 52 2.78530 3.68914 0.12569 3.46085 59 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 53 2.78772 3.69294 0.12526 3.46513 60 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 54 1.56474 2.90918 0.39913 2.72677 61 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 55 1.20555 1.17107 2.28178 1.24363 62 c - - : 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 56 1.05588 1.48899 1.41052 1.70101 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.03157 4.16432 4.16432 1.46634 0.26236 1.09861 0.40547 57 1.15567 1.52705 1.81589 1.18652 64 a - - : 1.38629 1.38629 1.38629 1.38629 0.11318 4.16432 2.39176 1.46634 0.26236 1.09861 0.40547 58 0.39968 2.00644 2.50649 2.17641 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.03421 4.08535 4.08535 1.46634 0.26236 2.06507 0.13560 59 1.20517 1.31959 1.43539 1.63428 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.03421 4.08535 4.08535 1.46634 0.26236 2.06507 0.13560 60 1.07888 2.10383 2.27891 0.83094 67 u - - : 1.38629 1.38629 1.38629 1.38629 0.03421 4.08535 4.08535 1.46634 0.26236 2.06507 0.13560 61 1.26775 1.41857 2.22207 0.99943 68 u - - : 1.38629 1.38629 1.38629 1.38629 0.03421 4.08535 4.08535 1.46634 0.26236 2.06507 0.13560 62 2.10513 0.92426 2.67429 0.88579 69 u - - : 1.38629 1.38629 1.38629 1.38629 0.01725 4.06839 * 1.46634 0.26236 0.00000 * //