0  structures 202  species 339  sequences

Family: SNORD81 (RF00136)

Description: Small nucleolar RNA SNORD81

Summary

Clan

This family is a member of clan (CL00050), which contains the following 2 members:

SNORD26 SNORD81

Wikipedia annotation Edit Wikipedia article

The Rfam group coordinates the annotation of Rfam families in Wikipedia. This family is described by a Wikipedia entry Small nucleolar RNA SNORD81. More...

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Sequences

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Table preview (300 out of 339 sequence regions)

Original order Download FASTA Accession Bit score Type Start End Description Species View context
0
AJ224028.1 N/A seed 3 79 Homo sapiens Z23 small nucleolar RNA gene Homo sapiens (human) ENA graphic
1
AJ224035.1 N/A seed 1 76 Mus musculus Z23 small nucleolar RNA gene Mus musculus (house mouse) ENA graphic
2
AL606750.13 N/A seed 40,184 40,260 Mouse DNA sequence from clone RP23-335A19 on chromosome 3 Contains a glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene, the 3' end of two novel genes (IMAGE:6306854 IMAGE:5030542 4930431B09Rik) and a novel gene. Mus musculus (house mouse) ENA graphic
3
ABDC01278790.1 N/A seed 3,802 3,878 Microcebus murinus cont1.278789, whole genome shotgun sequence. Microcebus murinus (gray mouse lemur) ENA graphic
4
AANU01240317.1 N/A seed 3,294 3,218 Macaca mulatta 1099214671913, whole genome shotgun sequence. Macaca mulatta (Rhesus monkey) ENA graphic
5
AAPY01728088.1 N/A seed 9,340 9,415 Tupaia belangeri cont1.728087, whole genome shotgun sequence. Tupaia belangeri (northern tree shrew) ENA graphic
6
AAYZ01154866.1 N/A seed 3,472 3,396 Ochotona princeps cont2.154865, whole genome shotgun sequence. Ochotona princeps (American pika) ENA graphic
7
AALT01063557.1 N/A seed 160 231 Sorex araneus cont1.063556, whole genome shotgun sequence. Sorex araneus (European shrew) ENA graphic
8
AAFC03120161.1 N/A seed 30,906 30,982 Bos taurus Ctg33835, whole genome shotgun sequence. Bos taurus (cattle) ENA graphic
9
AADA01033599.1 N/A seed 12,200 12,125 Pan troglodytes ctg_33598, whole genome shotgun sequence. Pan troglodytes (chimpanzee) ENA graphic
10
AANN01159637.1 N/A seed 259 333 Erinaceus europaeus cont1.159636, whole genome shotgun sequence. Erinaceus europaeus (western European hedgehog) ENA graphic
11
AAIY01534871.1 N/A seed 472 399 Echinops telfairi cont1.534871, whole genome shotgun sequence. Echinops telfairi (small Madagascar hedgehog) ENA graphic
12
AANU01265424.1 N/A seed 25,442 25,518 Macaca mulatta 1099214598121, whole genome shotgun sequence. Macaca mulatta (Rhesus monkey) ENA graphic
13
AAIY01210190.1 N/A seed 1,318 1,402 Echinops telfairi cont1.210189, whole genome shotgun sequence. Echinops telfairi (small Madagascar hedgehog) ENA graphic
14
AAIY01244248.1 N/A seed 1,113 1,040 Echinops telfairi cont1.244247, whole genome shotgun sequence. Echinops telfairi (small Madagascar hedgehog) ENA graphic
15
AANU01202269.1 N/A seed 48,062 48,138 Macaca mulatta 1099214710582, whole genome shotgun sequence. Macaca mulatta (Rhesus monkey) ENA graphic
16
AAGV020273689.1 N/A seed 3,634 3,710 Dasypus novemcinctus cont2.273688, whole genome shotgun sequence. Dasypus novemcinctus (nine-banded armadillo) ENA graphic
17
AAKN02037311.1 N/A seed 43,777 43,853 Cavia porcellus strain inbred line 2N cont2.37310, whole genome shotgun sequence. Cavia porcellus (Domestic guinea pig) ENA graphic
18
AAGU03036956.1 N/A seed 70,179 70,252 Loxodonta africana cont3.36955, whole genome shotgun sequence. Loxodonta africana (African savanna elephant) ENA graphic
19
AAEX03005203.1 N/A seed 132,526 132,602 Canis lupus familiaris cont3.5203, whole genome shotgun sequence. Canis lupus familiaris (dog) ENA graphic
20
AAPE02018271.1 N/A seed 28,237 28,161 Myotis lucifugus cont2.18270, whole genome shotgun sequence. Myotis lucifugus (little brown bat) ENA graphic
21
AAWZ02040398.1 N/A seed 3,978 3,901 Anolis carolinensis chromosome Unknown cont2.40397, whole genome shotgun sequence. Anolis carolinensis (green anole) ENA graphic
0
KZ206965.1 107.80 full 21,208,115 21,208,191 KZ206965.1 Aotus nancymaae isolate 86115 unplaced genomic scaffold Scaffold76, whole genome shotgun sequence Aotus nancymaae (Ma's night monkey) ENA graphic
1
JACDTQ010002688.1 107.80 full 10,134,704 10,134,628 JACDTQ010002688.1 Diceros bicornis minor isolate SBR-YM ScS9zPn_2688, whole genome shotgun sequence Diceros bicornis minor ENA graphic
2
NW_017731356.1 107.80 full 4,780,640 4,780,564 NW_017731356.1 Hipposideros armiger isolate ML-2016 unplaced genomic scaffold, ASM189008v1, whole genome shotgun sequence Hipposideros armiger ENA graphic
3
CM001658.1 107.10 full 28,653,665 28,653,741 Nomascus leucogenys chromosome 12, whole genome shotgun sequence. Nomascus leucogenys (Northern white-cheeked gibbon) ENA graphic
4
CM009262.2 107.10 full 76,329,182 76,329,258 CM009262.2 Pongo abelii isolate Susie chromosome 1, whole genome shotgun sequence Pongo abelii (Sumatran orangutan) ENA graphic
5
FR853080.2 107.10 full 152,936,286 152,936,210 Gorilla gorilla gorilla genomic chromosome, chr1, whole genome shotgun sequence Gorilla gorilla gorilla (western lowland gorilla) ENA graphic
6
CM021932.1 106.20 full 22,742,984 22,743,060 CM021932.1 Callithrix jacchus isolate mCalJac1 chromosome 18, whole genome shotgun sequence Callithrix jacchus (white-tufted-ear marmoset) ENA graphic
7
NW_017869562.1 105.90 full 2,083,524 2,083,448 NW_017869562.1 Castor canadensis isolate Ward unplaced genomic scaffold, C.can genome v1.0 scaffold_235, whole genome shotgun sequence Castor canadensis (American beaver) ENA graphic
8
CAAGRJ010041540.1 105.40 full 219,352 219,428 CAAGRJ010041540.1 Lynx pardinus genome assembly, contig: lp23s15824, whole genome shotgun sequence Lynx pardinus (Spanish lynx) ENA graphic
9
CM001394.3 105.40 full 18,038,019 18,037,943 Felis catus isolate Cinnamon breed Abyssinian chromosome F1, whole genome shotgun sequence. Felis catus (domestic cat) ENA graphic
10
CM017345.2 105.40 full 15,787,069 15,786,993 CM017345.2 Lynx canadensis isolate LIC74 chromosome F1, whole genome shotgun sequence Lynx canadensis (Canada lynx) ENA graphic
11
LZNR01001545.1 105.40 full 216,954 216,878 LZNR01001545.1 Ursus americanus isolate MABB319796 Contig1547, whole genome shotgun sequence Ursus americanus (American black bear) ENA graphic
12
NW_020339222.1 105.40 full 284,521 284,445 NW_020339222.1 Puma concolor isolate SC36_Marlon unplaced genomic scaffold, PumCon1.0 scaffold_2175, whole genome shotgun sequence Puma concolor (puma) ENA graphic
13
NW_020834759.1 105.40 full 229,716 229,640 NW_020834759.1 Acinonyx jubatus isolate Rico unplaced genomic scaffold, Aci_jub_2 Primary Assembly Aci_jub_2_ph1_scaffold33, whole genome shotgun sequence Acinonyx jubatus (cheetah) ENA graphic
14
NW_024424452.1 105.40 full 77,697,044 77,696,968 NW_024424452.1 Ursus maritimus isolate PB19 unplaced genomic scaffold, ASM1731132v1 scaffold_2, whole genome shotgun sequence Ursus maritimus (polar bear) ENA graphic
15
CM016647.2 105.20 full 9,487,366 9,487,442 CM016647.2 Camelus dromedarius isolate Drom800 breed African chromosome 21, whole genome shotgun sequence Camelus dromedarius (Arabian camel) ENA graphic
16
KB016345.1 105.20 full 621,974 622,050 Camelus ferus unplaced genomic scaffold scaffold45, whole genome shotgun sequence. Camelus ferus (Wild Bactrian camel) ENA graphic
17
NW_011513524.1 105.20 full 191,102 191,026 NW_011513524.1 Camelus bactrianus breed Alxa unplaced genomic scaffold, Ca_bactrianus_MBC_1.0 scaffold117, whole genome shotgun sequence Camelus bactrianus (Bactrian camel) ENA graphic
18
NW_021964199.1 105.20 full 8,937,308 8,937,232 NW_021964199.1 Vicugna pacos isolate Carlotta (AHFN-0088) chromosome 21 unlocalized genomic scaffold, VicPac3.1 ScfyRBE_283;HRSCAF=923, whole genome shotgun sequence Vicugna pacos (alpaca) ENA graphic
19
KV389488.1 104.90 full 3,132,642 3,132,718 KV389488.1 Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold62, whole genome shotgun sequence Cebus imitator (Panamanian white-faced capuchin) ENA graphic
20
NW_022436965.1 104.90 full 16,437,466 16,437,542 NW_022436965.1 Sapajus apella isolate SASKATOON/1434 unplaced genomic scaffold, GSC_monkey_1.0 scaffold25, whole genome shotgun sequence Cebus apella (Tufted capuchin) ENA graphic
21
CM014247.1 104.70 full 8,725,490 8,725,414 CM014247.1 Rhinolophus ferrumequinum isolate MPI-CBG mRhiFer1 chromosome 22, whole genome shotgun sequence Rhinolophus ferrumequinum (greater horseshoe bat) ENA graphic
22
CM007662.1 104.70 full 135,005,696 135,005,620 CM007662.1 Microcebus murinus isolate mixed chromosome 2, whole genome shotgun sequence Microcebus murinus (gray mouse lemur) ENA graphic
23
CM000314.3 104.10 full 152,270,715 152,270,639 Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 1, whole genome shotgun sequence. Pan troglodytes (chimpanzee) ENA graphic
24
CM000663.2 104.10 full 173,864,222 173,864,146 Homo sapiens chromosome 1, GRCh38 reference primary assembly. Homo sapiens (human) ENA graphic
25
CM003383.1 104.10 full 153,086,193 153,086,117 CM003383.1 Pan paniscus isolate Ulindi chromosome 1, whole genome shotgun sequence Pan paniscus (pygmy chimpanzee) ENA graphic
26
CM026986.1 103.70 full 73,306,700 73,306,776 CM026986.1 Rattus norvegicus strain BN/NHsdMcwi chromosome 13, whole genome shotgun sequence Rattus norvegicus (Norway rat) ENA graphic
27
GL873535.1 103.50 full 19,291,269 19,291,345 Otolemur garnettii unplaced genomic scaffold scaffold00016, whole genome shotgun sequence. Otolemur garnettii (small-eared galago) ENA graphic
28
NW_019154108.1 103.20 full 28,346,463 28,346,539 NW_019154108.1 Enhydra lutris kenyoni isolate GAN:26980312 unplaced genomic scaffold, ASM228890v2 scaffoldscaffold24, whole genome shotgun sequence Enhydra lutris kenyoni ENA graphic
29
LZPO01034931.1 102.80 full 27,745 27,821 Neotoma lepida isolate 417 scaffold_1122, whole genome shotgun sequence. Neotoma lepida (desert woodrat) ENA graphic
30
NW_006501159.1 102.80 full 903,582 903,506 NW_006501159.1 Peromyscus maniculatus bairdii unplaced genomic scaffold, Pman_1.0 Scaffold123, whole genome shotgun sequence Peromyscus maniculatus bairdii (prairie deer mouse) ENA graphic
31
CM014336.1 102.80 full 31,163,526 31,163,450 CM014336.1 Macaca mulatta isolate AG07107 chromosome 1, whole genome shotgun sequence Macaca mulatta (Rhesus monkey) ENA graphic
32
CM018180.1 102.80 full 187,997,131 187,997,207 CM018180.1 Papio anubis isolate 15944 chromosome 1, whole genome shotgun sequence Papio anubis (Olive baboon) ENA graphic
33
CM019240.1 102.80 full 30,511,252 30,511,176 CM019240.1 Piliocolobus tephrosceles isolate RC106 chromosome 1, whole genome shotgun sequence Piliocolobus tephrosceles (Ugandan red Colobus) ENA graphic
34
KN296157.1 102.80 full 1,054,804 1,054,728 KN296157.1 Rhinopithecus roxellana isolate Xiao Hai unplaced genomic scaffold ENSRROG022268, whole genome shotgun sequence Rhinopithecus roxellana (golden snub-nosed monkey) ENA graphic
35
KN974384.1 102.80 full 187,361 187,285 KN974384.1 Mandrillus leucophaeus isolate KB7577 unplaced genomic scaffold Scaffold226, whole genome shotgun sequence Mandrillus leucophaeus (drill) ENA graphic
36
KN984673.1 102.80 full 4,437,927 4,437,851 KN984673.1 Colobus angolensis palliatus isolate OR3802 unplaced genomic scaffold Scaffold59, whole genome shotgun sequence Colobus angolensis palliatus ENA graphic
37
KQ004830.1 102.80 full 3,480,321 3,480,245 KQ004830.1 Macaca nemestrina isolate M95218 unplaced genomic scaffold Scaffold12, whole genome shotgun sequence Macaca nemestrina (pig-tailed macaque) ENA graphic
38
KQ010861.1 102.80 full 2,277,807 2,277,731 KQ010861.1 Cercocebus atys isolate FAK unplaced genomic scaffold Scaffold232, whole genome shotgun sequence Cercocebus atys (sooty mangabey) ENA graphic
39
MCGX01001328.1 102.80 full 2,962,927 2,962,851 MCGX01001328.1 Rhinopithecus bieti isolate Rb0 scaffold_1853, whole genome shotgun sequence Rhinopithecus bieti (Black snub-nosed monkey) ENA graphic
40
GL429821.1 102.60 full 1,168,103 1,168,027 Myotis lucifugus unplaced genomic scaffold scaffold_54, whole genome shotgun sequence. Myotis lucifugus (little brown bat) ENA graphic
41
JAULJE010000022.1 102.60 full 19,334,404 19,334,328 JAULJE010000022.1 Eptesicus nilssonii isolate BLF_Eptnil Scaffold_22, whole genome shotgun sequence Eptesicus nilssoni (northern bat) ENA graphic
42
KE162497.1 102.60 full 5,676,456 5,676,380 KE162497.1 Myotis brandtii unplaced genomic scaffold scaffold250, whole genome shotgun sequence Myotis brandtii ENA graphic
43
JH378117.1 102.60 full 13,721,707 13,721,783 JH378117.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00013, whole genome shotgun sequence Saimiri boliviensis boliviensis (Bolivian squirrel monkey) ENA graphic
44
JH378118.1 102.60 full 33,676,544 33,676,620 JH378118.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00014, whole genome shotgun sequence Saimiri boliviensis boliviensis (Bolivian squirrel monkey) ENA graphic
45
CM001966.2 102.00 full 55,327,842 55,327,918 Chlorocebus sabaeus isolate 1994-021 chromosome 25, whole genome shotgun sequence. Chlorocebus sabaeus ENA graphic
46
NW_004801631.1 102.00 full 9,966,233 9,966,309 NW_004801631.1 Mesocricetus auratus isolate Golden Hamster female 1 unplaced genomic scaffold, MesAur1.0 scaffold00028, whole genome shotgun sequence Mesocricetus auratus (golden hamster) ENA graphic
47
JACASE010000017.1 101.90 full 18,830,970 18,831,046 JACASE010000017.1 Rousettus aegyptiacus isolate mRouAeg1 scaffold_m13_p_17, whole genome shotgun sequence Rousettus aegyptiacus (Egyptian rousette) ENA graphic
48
JAATJV010186628.1 101.70 full 92,730 92,654 JAATJV010186628.1 Sciurus carolinensis isolate SUZIE scaffold14528, whole genome shotgun sequence Sciurus carolinensis (gray squirrel) ENA graphic
49
NW_025422087.1 101.60 full 15,970,014 15,969,938 NW_025422087.1 Mustela putorius furo isolate JIRA1106 unplaced genomic scaffold, ASM1176430v1.1 tig00003942_pilon_pilon_pilon, whole genome shotgun sequence Mustela putorius furo (domestic ferret) ENA graphic
50
CM025106.1 101.30 full 25,116,610 25,116,686 CM025106.1 Canis lupus familiaris isolate SID07034 breed Labrador retriever chromosome 7, whole genome shotgun sequence Canis lupus familiaris (dog) ENA graphic
51
CM025463.1 101.30 full 25,067,075 25,067,151 CM025463.1 Canis lupus dingo isolate Sandy chromosome 7, whole genome shotgun sequence Canis lupus dingo (dingo) ENA graphic
52
NW_020356470.1 101.30 full 15,085,473 15,085,549 NW_020356470.1 Vulpes vulpes strain TameXAggressive cross unplaced genomic scaffold, VulVul2.2 scaffold36, whole genome shotgun sequence Vulpes vulpes (red fox) ENA graphic
53
KQ025513.1 101.10 full 6,913,264 6,913,188 KQ025513.1 Propithecus coquereli isolate 6110/MARCELLA unplaced genomic scaffold Scaffold56, whole genome shotgun sequence Propithecus coquereli (Coquerel's sifaka) ENA graphic
54
NW_004450683.1 100.30 full 746,479 746,555 NW_004450683.1 Odobenus rosmarus divergens isolate Ivan unplaced genomic scaffold, Oros_1.0 Scaffold420, whole genome shotgun sequence Odobenus rosmarus divergens (Pacific walrus) ENA graphic
55
NW_020312885.1 100.30 full 17,253,202 17,253,126 NW_020312885.1 Callorhinus ursinus isolate GAN/ISIS: 27379988/994484 unplaced genomic scaffold, ASM326570v1 scaffold143, whole genome shotgun sequence Callorhinus ursinus (northern fur seal) ENA graphic
56
NW_017871545.1 100.20 full 14,028 14,104 NW_017871545.1 Castor canadensis isolate Ward unplaced genomic scaffold, C.can genome v1.0 scaffold_2218, whole genome shotgun sequence Castor canadensis (American beaver) ENA graphic
57
KB320813.1 100.10 full 1,638,627 1,638,702 KB320813.1 Tupaia chinensis unplaced genomic scaffold Scaffold000369_1, whole genome shotgun sequence Tupaia chinensis (Chinese tree shrew) ENA graphic
58
JACAGB010000018.1 100.10 full 21,776,515 21,776,591 JACAGB010000018.1 Pipistrellus kuhlii isolate mPipKuh1 scaffold_m20_p_18, whole genome shotgun sequence Pipistrellus kuhlii (Kuhl's pipistrelle) ENA graphic
59
JH378133.1 100.00 full 716,289 716,365 JH378133.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00029, whole genome shotgun sequence Saimiri boliviensis boliviensis (Bolivian squirrel monkey) ENA graphic
60
JABWUV010000018.1 99.90 full 24,689,659 24,689,735 JABWUV010000018.1 Myotis myotis isolate mMyoMyo1 scaffold_m19_p_18, whole genome shotgun sequence Myotis myotis ENA graphic
61
KB109864.1 99.90 full 2,247,260 2,247,184 KB109864.1 Myotis davidii unplaced genomic scaffold scaffold580, whole genome shotgun sequence Myotis davidii ENA graphic
62
CM021939.1 99.80 full 31,127,195 31,127,119 CM021939.1 Macaca fascicularis isolate cy0333 breed Mauritian cynomolgus macaque chromosome 1, whole genome shotgun sequence Macaca fascicularis (crab-eating macaque) ENA graphic
63
CM018477.1 99.70 full 14,521,735 14,521,659 CM018477.1 Panthera leo isolate Brooke chromosome F2, whole genome shotgun sequence Panthera leo (lion) ENA graphic
64
CM000802.1 99.60 full 1,208,759 1,208,683 Oryctolagus cuniculus chromosome 13, whole genome shotgun sequence. Oryctolagus cuniculus (rabbit) ENA graphic
65
NC_058408.1 99.60 full 52,658,762 52,658,838 NC_058408.1 Neomonachus schauinslandi chromosome 6, ASM220157v2, whole genome shotgun sequence Monachus schauinslandi (Hawaiian monk seal) ENA graphic
66
NW_006383638.1 99.60 full 120,241 120,317 NW_006383638.1 Leptonychotes weddellii isolate WS11-02 unplaced genomic scaffold, LepWed1.0 scaffold00598, whole genome shotgun sequence Leptonychotes weddellii (Weddell seal) ENA graphic
67
CM000994.3 99.40 full 160,865,878 160,865,953 CM000994.3 Mus musculus chromosome 1, GRCm39 reference primary assembly C57BL/6J Mus musculus (house mouse) ENA graphic
68
QGOO02000001.1 99.40 full 34,519,236 34,519,161 QGOO02000001.1 Mus spicilegus strain ZRU musp714_scaffold_00001b, whole genome shotgun sequence Mus spicilegus (steppe mouse) ENA graphic
69
CM009950.1 99.10 full 192,179,467 192,179,543 CM009950.1 Theropithecus gelada isolate Dixy chromosome 1, whole genome shotgun sequence Theropithecus gelada (gelada baboon) ENA graphic
70
CM016973.1 99.00 full 124,034,529 124,034,452 CM016973.1 Suricata suricatta isolate VVHF042 chromosome 3, whole genome shotgun sequence Suricata suricatta (meerkat) ENA graphic
71
JH166641.1 98.90 full 1,885,577 1,885,653 JH166641.1 Heterocephalus glaber unplaced genomic scaffold scaffold961, whole genome shotgun sequence Heterocephalus glaber (naked mole-rat) ENA graphic
72
KE721788.1 98.80 full 2,955,998 2,956,074 KE721788.1 Panthera tigris altaica isolate TaeGuk unplaced genomic scaffold scaffold177, whole genome shotgun sequence Panthera tigris altaica (Amur tiger) ENA graphic
73
CABDUW010000713.1 98.50 full 693,145 693,068 CABDUW010000713.1 Marmota monax genome assembly, contig: monax5_s00713, whole genome shotgun sequence Marmota monax (woodchuck) ENA graphic
74
CZRN02000178.1 98.50 full 18,428,356 18,428,433 CZRN02000178.1 Marmota marmota marmota genome assembly, contig: chr1_part3, whole genome shotgun sequence Marmota marmota marmota (Alpine marmot) ENA graphic
75
JH393291.1 98.50 full 14,025,140 14,025,217 JH393291.1 Spermophilus tridecemlineatus unplaced genomic scaffold scaffold00013, whole genome shotgun sequence Spermophilus tridecemlineatus (thirteen-lined ground squirrel) ENA graphic
76
KZ294625.1 98.50 full 1,304,342 1,304,419 KZ294625.1 Spermophilus dauricus unplaced genomic scaffold scaffold416, whole genome shotgun sequence Spermophilus dauricus (Daurian ground squirrel) ENA graphic
77
QVIC01000060.1 98.50 full 1,589,376 1,589,299 QVIC01000060.1 Urocitellus parryii isolate AGS 11-09-20 scaffold_59, whole genome shotgun sequence Spermophilus parryii (Arctic ground squirrel) ENA graphic
78
CAJHUB010000666.1 98.30 full 1,830,041 1,829,965 CAJHUB010000666.1 Nyctereutes procyonoides isolate TBG_1078 genome assembly, contig: Nypro699, whole genome shotgun sequence Nyctereutes procyonoides (raccoon dog) ENA graphic
79
CYRY02030037.1 98.10 full 2,258 2,334 CYRY02030037.1 Gulo gulo genome assembly, contig: scaffold3867, whole genome shotgun sequence Gulo gulo (wolverine) ENA graphic
80
JAATJU010023977.1 97.90 full 3,815,481 3,815,405 JAATJU010023977.1 Microtus ochrogaster isolate LTLLF scaffold112, whole genome shotgun sequence Microtus ochrogaster (prairie vole) ENA graphic
81
NW_011907515.1 97.30 full 720 643 NW_011907515.1 Pteropus vampyrus isolate Shadow unplaced genomic scaffold, Pvam_2.0 Scaffold18734, whole genome shotgun sequence Pteropus vampyrus (large flying fox) ENA graphic
82
JH725464.1 96.80 full 24,437,617 24,437,691 JH725464.1 Jaculus jaculus unplaced genomic scaffold scaffold00028, whole genome shotgun sequence Jaculus jaculus (lesser Egyptian jerboa) ENA graphic
83
KN122764.1 96.60 full 623,688 623,764 KN122764.1 Fukomys damarensis unplaced genomic scaffold scaffold318, whole genome shotgun sequence Fukomys damarensis (Damara mole-rat) ENA graphic
84
JH378124.1 96.40 full 4,765,694 4,765,770 JH378124.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00020, whole genome shotgun sequence Saimiri boliviensis boliviensis (Bolivian squirrel monkey) ENA graphic
85
JH725480.1 96.40 full 2,491,641 2,491,567 JH725480.1 Jaculus jaculus unplaced genomic scaffold scaffold00044, whole genome shotgun sequence Jaculus jaculus (lesser Egyptian jerboa) ENA graphic
86
NW_006408618.1 96.40 full 3,451,366 3,451,291 NW_006408618.1 Chrysochloris asiatica unplaced genomic scaffold, ChrAsi1.0 scaffold00100, whole genome shotgun sequence Chrysochloris asiatica ENA graphic
87
NW_006408618.1 96.40 full 3,455,132 3,455,057 NW_006408618.1 Chrysochloris asiatica unplaced genomic scaffold, ChrAsi1.0 scaffold00100, whole genome shotgun sequence Chrysochloris asiatica ENA graphic
88
NC_041217.1 95.90 full 44,403,611 44,403,534 NC_041217.1 Physeter catodon isolate SW-GA chromosome 4, ASM283717v5, whole genome shotgun sequence Physeter catodon (sperm whale) ENA graphic
89
SGJD01003878.1 95.90 full 211,018 210,941 SGJD01003878.1 Balaenoptera physalus isolate FinWhale-01 scaffold4909, whole genome shotgun sequence Balaenoptera physalus (Fin whale) ENA graphic
90
KB030474.1 95.60 full 14,220,199 14,220,276 KB030474.1 Pteropus alecto unplaced genomic scaffold scaffold101, whole genome shotgun sequence Pteropus alecto (black flying fox) ENA graphic
91
JH721866.1 95.50 full 13,995,279 13,995,204 JH721866.1 Chinchilla lanigera unplaced genomic scaffold scaffold00005, whole genome shotgun sequence Chinchilla lanigera ENA graphic
92
KV389598.1 95.50 full 1,502,650 1,502,726 KV389598.1 Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold172, whole genome shotgun sequence Cebus imitator (Panamanian white-faced capuchin) ENA graphic
93
NW_022436984.1 95.50 full 17,805,122 17,805,046 NW_022436984.1 Sapajus apella isolate SASKATOON/1434 unplaced genomic scaffold, GSC_monkey_1.0 scaffold44, whole genome shotgun sequence Cebus apella (Tufted capuchin) ENA graphic
94
NW_007246125.1 95.40 full 260,717 260,793 NW_007246125.1 Carlito syrichta isolate Samal-C Ts95f unplaced genomic scaffold, Tarsius_syrichta-2.0.1 Scaffold302029, whole genome shotgun sequence Carlito syrichta (Philippine tarsier) ENA graphic
95
QGOO02001649.1 94.80 full 1,797 1,721 QGOO02001649.1 Mus spicilegus strain ZRU musp714_scaffold_01651, whole genome shotgun sequence Mus spicilegus (steppe mouse) ENA graphic
96
NTJE010278150.1 94.80 full 16,162 16,085 NTJE010278150.1 Eschrichtius robustus isolate AM-GW-M-EMB-4M-20130531 contig_310808, whole genome shotgun sequence Eschrichtius robustus (grey whale) ENA graphic
97
CM022826.1 94.70 full 77,585,727 77,585,655 CM022826.1 Ailuropoda melanoleuca isolate Jingjing chromosome 8, whole genome shotgun sequence Ailuropoda melanoleuca (giant panda) ENA graphic
98
JH168899.1 94.50 full 129,449 129,376 JH168899.1 Heterocephalus glaber unplaced genomic scaffold scaffold2873, whole genome shotgun sequence Heterocephalus glaber (naked mole-rat) ENA graphic
99
MPIZ01000981.1 94.20 full 1,681,907 1,681,828 MPIZ01000981.1 Prolemur simus strain KIAN8.4 scaffold981, whole genome shotgun sequence Prolemur simus (greater bamboo lemur) ENA graphic
100
LR738623.1 93.70 full 106,896,384 106,896,460 LR738623.1 Sciurus vulgaris genome assembly, chromosome: 12 Sciurus vulgaris (Eurasian red squirrel) ENA graphic
101
GL010043.1 93.50 full 27,357,421 27,357,494 Loxodonta africana unplaced genomic scaffold scaffold_16, whole genome shotgun sequence. Loxodonta africana (African savanna elephant) ENA graphic
102
JACASF010000020.1 93.40 full 48,748,847 48,748,923 JACASF010000020.1 Molossus molossus isolate mMolMol1 scaffold_m16_p_20, whole genome shotgun sequence Molossus molossus (Pallas's mastiff bat) ENA graphic
103
FNWR01000074.1 93.20 full 403,776 403,852 FNWR01000074.1 Neovison vison genome assembly, contig: scaffold74, whole genome shotgun sequence Neovison vison ENA graphic
104
JAGFMF010011697.1 93.10 full 1,556,002 1,556,078 JAGFMF010011697.1 Galemys pyrenaicus isolate IBE-C5619 2611377, whole genome shotgun sequence Galemys pyrenaicus ENA graphic
105
JH000079.1 93.10 full 1,491,161 1,491,086 JH000079.1 Cricetulus griseus cell line CHO-K1 unplaced genomic scaffold scaffold172, whole genome shotgun sequence Cricetulus griseus (Chinese hamster) ENA graphic
106
CM008183.2 92.70 full 55,234,742 55,234,666 CM008183.2 Bos taurus isolate L1 Dominette 01449 registration number 42190680 breed Hereford chromosome 16, whole genome shotgun sequence Bos taurus (cattle) ENA graphic
107
CM011789.1 92.70 full 54,609,481 54,609,405 CM011789.1 Bos indicus x Bos taurus breed Angus x Brahman F1 hybrid chromosome 16, whole genome shotgun sequence Bos indicus x Bos taurus (hybrid cattle) ENA graphic
108
NC_032665.1 92.70 full 52,467,827 52,467,751 NC_032665.1 Bos indicus isolate QUIL7308 breed Nelore chromosome 16, Bos_indicus_1.0, whole genome shotgun sequence Bos indicus ENA graphic
109
CM018482.1 92.70 full 98,306,392 98,306,316 CM018482.1 Muntiacus reevesi isolate UCam_UCB_Mr chromosome 5, whole genome shotgun sequence Muntiacus reevesi (Chinese muntjac) ENA graphic
110
CM018156.1 92.40 full 130,434,641 130,434,564 CM018156.1 Phocoena sinus isolate mPhoSin1 chromosome 1, whole genome shotgun sequence Phocoena sinus (vaquita) ENA graphic
111
NC_047034.1 92.40 full 55,625,255 55,625,332 NC_047034.1 Tursiops truncatus isolate mTurTru1 chromosome 1, mTurTru1.mat.Y, whole genome shotgun sequence Tursiops truncatus (bottlenosed dolphin) ENA graphic
112
NW_020174648.1 92.40 full 6,636,911 6,636,988 NW_020174648.1 Neophocaena asiaeorientalis asiaeorientalis breed wild unplaced genomic scaffold, Neophocaena_asiaeorientalis_V1 scaffold182, whole genome shotgun sequence Neophocaena asiaeorientalis asiaeorientalis (yangtze finless porpoise) ENA graphic
113
NW_022098095.1 92.40 full 512,420 512,497 NW_022098095.1 Delphinapterus leucas isolate GAN/ISIS: 26980492/103006 unplaced genomic scaffold, ASM228892v3 scaffoldscaffold104, whole genome shotgun sequence Delphinapterus leucas (beluga whale) ENA graphic
114
JH725438.1 92.30 full 43,551,076 43,551,150 JH725438.1 Jaculus jaculus unplaced genomic scaffold scaffold00002, whole genome shotgun sequence Jaculus jaculus (lesser Egyptian jerboa) ENA graphic
115
KN977149.1 92.30 full 5,311,866 5,311,789 KN977149.1 Mandrillus leucophaeus isolate KB7577 unplaced genomic scaffold Scaffold49, whole genome shotgun sequence Mandrillus leucophaeus (drill) ENA graphic
116
NW_012267243.1 92.30 full 9,871,775 9,871,851 NW_012267243.1 Dipodomys ordii isolate 6190 unplaced genomic scaffold, Dord_2.0 Scaffold27, whole genome shotgun sequence Dipodomys ordii (Ord's kangaroo rat) ENA graphic
117
PVHU020023298.1 92.20 full 3,825,951 3,826,027 PVHU020023298.1 Moschus moschiferus isolate BS20 Scw3uUT_23202;HRSCAF=125829_4, whole genome shotgun sequence Moschus moschiferus (Siberian musk deer) ENA graphic
118
CM000669.2 92.00 full 137,287,687 137,287,762 Homo sapiens chromosome 7, GRCh38 reference primary assembly. Homo sapiens (human) ENA graphic
119
CM021205.1 92.00 full 51,259,182 51,259,106 CM021205.1 Cervus hanglu yarkandensis isolate CEY-2017 chromosome 14, whole genome shotgun sequence Cervus elaphus yarkandensis ENA graphic
120
FR853100.2 92.00 full 136,749,387 136,749,462 Gorilla gorilla gorilla genomic chromosome, chr7, whole genome shotgun sequence Gorilla gorilla gorilla (western lowland gorilla) ENA graphic
121
KL205491.1 92.00 full 150,402 150,326 KL205491.1 Nannospalax galili isolate Female #2095 unplaced genomic scaffold scaffold429, whole genome shotgun sequence Nannospalax galili (Upper Galilee mountains blind mole rat) ENA graphic
122
CM001593.2 92.00 full 53,200,656 53,200,580 Ovis aries breed Texel chromosome 12, whole genome shotgun sequence. Ovis aries (sheep) ENA graphic
123
CM004577.1 92.00 full 53,756,365 53,756,289 CM004577.1 Capra hircus breed San Clemente chromosome 16, whole genome shotgun sequence Capra hircus (goat) ENA graphic
124
CM008021.1 92.00 full 70,395,592 70,395,516 CM008021.1 Cervus elaphus hippelaphus isolate Hungarian chromosome 14, whole genome shotgun sequence Cervus elaphus hippelaphus ENA graphic
125
CM000996.3 91.90 full 100,210,604 100,210,680 CM000996.3 Mus musculus chromosome 3, GRCm39 reference primary assembly C57BL/6J Mus musculus (house mouse) ENA graphic
126
NW_006799328.1 91.80 full 212,473 212,396 NW_006799328.1 Lipotes vexillifer unplaced genomic scaffold, Lipotes_vexillifer_v1 scaffold821, whole genome shotgun sequence Lipotes vexillifer (Yangtze River dolphin) ENA graphic
127
CM009269.2 91.60 full 123,287,088 123,287,163 CM009269.2 Pongo abelii isolate Susie chromosome 7, whole genome shotgun sequence Pongo abelii (Sumatran orangutan) ENA graphic
128
NC_045785.1 91.40 full 129,459,314 129,459,237 NC_045785.1 Balaenoptera musculus isolate JJ_BM4_2016_0621 chromosome 1, mBalMus1.pri.v3, whole genome shotgun sequence Balaenoptera musculus (Blue whale) ENA graphic
129
CM009152.1 91.30 full 9,553,495 9,553,419 CM009152.1 Equus caballus isolate Twilight breed thoroughbred chromosome 5, whole genome shotgun sequence Equus caballus (horse) ENA graphic
130
CM027714.2 91.30 full 37,589,487 37,589,563 CM027714.2 Equus asinus breed Dezhou chromosome 25, whole genome shotgun sequence Equus asinus (ass) ENA graphic
131
CM001658.1 91.10 full 90,941,643 90,941,567 Nomascus leucogenys chromosome 12, whole genome shotgun sequence. Nomascus leucogenys (Northern white-cheeked gibbon) ENA graphic
132
NW_004524593.1 90.90 full 3,609,764 3,609,838 NW_004524593.1 Octodon degus isolate 3935 unplaced genomic scaffold, OctDeg1.0 scaffold00017, whole genome shotgun sequence Octodon degus (degu) ENA graphic
133
NC_040916.2 90.90 full 21,824,145 21,824,220 NC_040916.2 Phyllostomus discolor isolate MPI-MPIP mPhyDis1 chromosome 14, mPhyDis1.pri.v3, whole genome shotgun sequence Phyllostomus discolor (pale spear-nosed bat) ENA graphic
134
QWLN02015690.1 90.70 full 1,082,371 1,082,294 QWLN02015690.1 Sousa chinensis isolate MY-2018 scaffold181.1, whole genome shotgun sequence Sousa chinensis (Indo-pacific humpbacked dolphin) ENA graphic
135
CM009262.2 90.60 full 141,673,797 141,673,721 CM009262.2 Pongo abelii isolate Susie chromosome 1, whole genome shotgun sequence Pongo abelii (Sumatran orangutan) ENA graphic
136
JH725458.1 90.50 full 10,845,687 10,845,613 JH725458.1 Jaculus jaculus unplaced genomic scaffold scaffold00022, whole genome shotgun sequence Jaculus jaculus (lesser Egyptian jerboa) ENA graphic
137
CM000321.4 90.00 full 141,871,154 141,871,229 Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 7, whole genome shotgun sequence. Pan troglodytes (chimpanzee) ENA graphic
138
CM003390.1 90.00 full 141,737,955 141,738,030 CM003390.1 Pan paniscus isolate Ulindi chromosome 7, whole genome shotgun sequence Pan paniscus (pygmy chimpanzee) ENA graphic
139
RWIC01001038.1 89.90 full 264,604 264,527 RWIC01001038.1 Monodon monoceros isolate MVW Scaffold1038, whole genome shotgun sequence Monodon monoceros (narwhal) ENA graphic
140
CM000820.5 89.80 full 116,145,390 116,145,312 Sus scrofa isolate TJ Tabasco breed Duroc chromosome 9, whole genome shotgun sequence. Sus scrofa (pig) ENA graphic
141
NW_018335398.1 89.60 full 819,023 818,947 NW_018335398.1 Odocoileus virginianus texanus isolate animal Pink-7 unplaced genomic scaffold, Ovir.te_1.0 scaffold23, whole genome shotgun sequence Odocoileus virginianus texanus ENA graphic
142
JH168479.1 89.40 full 1,376,207 1,376,131 JH168479.1 Heterocephalus glaber unplaced genomic scaffold scaffold823, whole genome shotgun sequence Heterocephalus glaber (naked mole-rat) ENA graphic
143
CM014341.1 88.60 full 18,326,272 18,326,348 CM014341.1 Macaca mulatta isolate AG07107 chromosome 6, whole genome shotgun sequence Macaca mulatta (Rhesus monkey) ENA graphic
144
CM016703.1 88.60 full 53,846,832 53,846,756 CM016703.1 Bos grunniens isolate yakHY00 ecotype maiwa chromosome 14, whole genome shotgun sequence Bos grunniens (domestic yak) ENA graphic
145
CM021944.1 88.60 full 18,398,407 18,398,483 CM021944.1 Macaca fascicularis isolate cy0333 breed Mauritian cynomolgus macaque chromosome 6, whole genome shotgun sequence Macaca fascicularis (crab-eating macaque) ENA graphic
146
JH880647.1 88.60 full 1,318,943 1,319,019 JH880647.1 Bos grunniens mutus unplaced genomic scaffold scaffold341_1, whole genome shotgun sequence Bos grunniens mutus ENA graphic
147
KQ005458.1 88.60 full 1,272,435 1,272,359 KQ005458.1 Macaca nemestrina isolate M95218 unplaced genomic scaffold Scaffold178, whole genome shotgun sequence Macaca nemestrina (pig-tailed macaque) ENA graphic
148
NW_011494861.1 88.60 full 15,391,372 15,391,296 NW_011494861.1 Bison bison bison isolate TAMUID 2011002044 unplaced genomic scaffold, Bison_UMD1.0 scf7180017864289, whole genome shotgun sequence Bison bison bison (north american plains bison) ENA graphic
149
NW_006921762.1 88.00 full 3,583,271 3,583,344 NW_006921762.1 Orycteropus afer afer isolate SDZICR_OR568_19922 unplaced genomic scaffold, OryAfe1.0 scaffold00175, whole genome shotgun sequence Orycteropus afer afer ENA graphic
150
NW_004443957.1 87.70 full 10,410,307 10,410,231 NW_004443957.1 Trichechus manatus latirostris isolate Lorelei unplaced genomic scaffold, TriManLat1.0 scaffold00021, whole genome shotgun sequence Trichechus manatus latirostris ENA graphic
151
DS562867.1 87.60 full 10,039,941 10,040,020 Cavia porcellus supercont2_12 genomic scaffold, whole genome shotgun sequence. Cavia porcellus (Domestic guinea pig) ENA graphic
152
CM009952.1 87.50 full 161,798,877 161,798,954 CM009952.1 Theropithecus gelada isolate Dixy chromosome 3, whole genome shotgun sequence Theropithecus gelada (gelada baboon) ENA graphic
153
CM014338.1 87.50 full 163,708,559 163,708,636 CM014338.1 Macaca mulatta isolate AG07107 chromosome 3, whole genome shotgun sequence Macaca mulatta (Rhesus monkey) ENA graphic
154
CM018183.2 87.50 full 21,358,865 21,358,788 CM018183.2 Papio anubis isolate 15944 chromosome 4, whole genome shotgun sequence Papio anubis (Olive baboon) ENA graphic
155
CM021941.1 87.50 full 164,722,862 164,722,939 CM021941.1 Macaca fascicularis isolate cy0333 breed Mauritian cynomolgus macaque chromosome 3, whole genome shotgun sequence Macaca fascicularis (crab-eating macaque) ENA graphic
156
KN299787.1 87.50 full 3,212,625 3,212,548 KN299787.1 Rhinopithecus roxellana isolate Xiao Hai unplaced genomic scaffold ENSRROG047212, whole genome shotgun sequence Rhinopithecus roxellana (golden snub-nosed monkey) ENA graphic
157
KN980495.1 87.50 full 5,353,184 5,353,261 KN980495.1 Colobus angolensis palliatus isolate OR3802 unplaced genomic scaffold Scaffold2, whole genome shotgun sequence Colobus angolensis palliatus ENA graphic
158
KQ008339.1 87.50 full 7,067,184 7,067,107 KQ008339.1 Macaca nemestrina isolate M95218 unplaced genomic scaffold Scaffold46, whole genome shotgun sequence Macaca nemestrina (pig-tailed macaque) ENA graphic
159
KQ009908.1 87.50 full 2,827,786 2,827,863 KQ009908.1 Cercocebus atys isolate FAK unplaced genomic scaffold Scaffold137, whole genome shotgun sequence Cercocebus atys (sooty mangabey) ENA graphic
160
MCGX01003620.1 87.50 full 2,411,072 2,411,149 MCGX01003620.1 Rhinopithecus bieti isolate Rb0 scaffold_8307, whole genome shotgun sequence Rhinopithecus bieti (Black snub-nosed monkey) ENA graphic
161
PVHT020000175.1 87.50 full 8,417,161 8,417,085 PVHT020000175.1 Catagonus wagneri isolate BS18 Sc2sB16_147;HRSCAF=32195_2, whole genome shotgun sequence Catagonus wagneri (Chacoan peccary) ENA graphic
162
KN981225.1 87.30 full 1,666,816 1,666,740 KN981225.1 Colobus angolensis palliatus isolate OR3802 unplaced genomic scaffold Scaffold266, whole genome shotgun sequence Colobus angolensis palliatus ENA graphic
163
CM021922.1 86.70 full 107,307,285 107,307,210 CM021922.1 Callithrix jacchus isolate mCalJac1 chromosome 8, whole genome shotgun sequence Callithrix jacchus (white-tufted-ear marmoset) ENA graphic
164
CM000663.2 86.10 full 85,592,280 85,592,356 Homo sapiens chromosome 1, GRCh38 reference primary assembly. Homo sapiens (human) ENA graphic
165
FR853080.2 86.10 full 86,514,860 86,514,936 Gorilla gorilla gorilla genomic chromosome, chr1, whole genome shotgun sequence Gorilla gorilla gorilla (western lowland gorilla) ENA graphic
166
CM019243.1 85.70 full 17,630,667 17,630,743 CM019243.1 Piliocolobus tephrosceles isolate RC106 chromosome 4, whole genome shotgun sequence Piliocolobus tephrosceles (Ugandan red Colobus) ENA graphic
167
CM018184.2 85.60 full 17,421,262 17,421,338 CM018184.2 Papio anubis isolate 15944 chromosome 5, whole genome shotgun sequence Papio anubis (Olive baboon) ENA graphic
168
KQ010425.1 85.60 full 589,196 589,272 KQ010425.1 Cercocebus atys isolate FAK unplaced genomic scaffold Scaffold186, whole genome shotgun sequence Cercocebus atys (sooty mangabey) ENA graphic
169
NW_006804477.1 85.60 full 106,187 106,261 NW_006804477.1 Erinaceus europaeus isolate Erinaceus europaeus_13Jul2011 unplaced genomic scaffold, EriEur2.0 scaffold00554, whole genome shotgun sequence Erinaceus europaeus (western European hedgehog) ENA graphic
170
JH378123.1 85.40 full 8,615,036 8,615,112 JH378123.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00019, whole genome shotgun sequence Saimiri boliviensis boliviensis (Bolivian squirrel monkey) ENA graphic
171
CM001659.1 85.20 full 88,566,614 88,566,689 Nomascus leucogenys chromosome 13, whole genome shotgun sequence. Nomascus leucogenys (Northern white-cheeked gibbon) ENA graphic
172
CM019247.1 85.20 full 126,411,081 126,411,158 CM019247.1 Piliocolobus tephrosceles isolate RC106 chromosome 8, whole genome shotgun sequence Piliocolobus tephrosceles (Ugandan red Colobus) ENA graphic
173
VOAJ01023713.1 84.80 full 1,124 1,050 VOAJ01023713.1 Crocuta crocuta isolate KB4526 C28859344, whole genome shotgun sequence Crocuta crocuta (spotted hyena) ENA graphic
174
KQ021358.1 84.70 full 2,076,409 2,076,485 KQ021358.1 Propithecus coquereli isolate 6110/MARCELLA unplaced genomic scaffold Scaffold186, whole genome shotgun sequence Propithecus coquereli (Coquerel's sifaka) ENA graphic
175
JH378140.1 84.50 full 3,596,143 3,596,218 JH378140.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00036, whole genome shotgun sequence Saimiri boliviensis boliviensis (Bolivian squirrel monkey) ENA graphic
176
KN299790.1 84.40 full 1,830,424 1,830,500 KN299790.1 Rhinopithecus roxellana isolate Xiao Hai unplaced genomic scaffold ENSRROG047218, whole genome shotgun sequence Rhinopithecus roxellana (golden snub-nosed monkey) ENA graphic
177
MCGX01018405.1 84.40 full 1,330,295 1,330,371 MCGX01018405.1 Rhinopithecus bieti isolate Rb0 scaffold_52030, whole genome shotgun sequence Rhinopithecus bieti (Black snub-nosed monkey) ENA graphic
178
DS562893.1 84.20 full 21,197,841 21,197,917 Cavia porcellus supercont2_38 genomic scaffold, whole genome shotgun sequence. Cavia porcellus (Domestic guinea pig) ENA graphic
179
CM000314.3 83.70 full 86,019,912 86,019,988 Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 1, whole genome shotgun sequence. Pan troglodytes (chimpanzee) ENA graphic
180
CM003383.1 83.70 full 87,005,689 87,005,765 CM003383.1 Pan paniscus isolate Ulindi chromosome 1, whole genome shotgun sequence Pan paniscus (pygmy chimpanzee) ENA graphic
181
CM001962.2 83.30 full 105,970,048 105,970,125 Chlorocebus sabaeus isolate 1994-021 chromosome 21, whole genome shotgun sequence. Chlorocebus sabaeus ENA graphic
182
JH725437.1 83.10 full 19,614,127 19,614,201 JH725437.1 Jaculus jaculus unplaced genomic scaffold scaffold00001, whole genome shotgun sequence Jaculus jaculus (lesser Egyptian jerboa) ENA graphic
183
JH725437.1 82.60 full 69,745,717 69,745,792 JH725437.1 Jaculus jaculus unplaced genomic scaffold scaffold00001, whole genome shotgun sequence Jaculus jaculus (lesser Egyptian jerboa) ENA graphic
184
NW_004524643.1 82.50 full 12,141,277 12,141,203 NW_004524643.1 Octodon degus isolate 3935 unplaced genomic scaffold, OctDeg1.0 scaffold00067, whole genome shotgun sequence Octodon degus (degu) ENA graphic
185
KN974960.1 82.40 full 612,784 612,860 KN974960.1 Mandrillus leucophaeus isolate KB7577 unplaced genomic scaffold Scaffold278, whole genome shotgun sequence Mandrillus leucophaeus (drill) ENA graphic
186
CM019251.1 81.80 full 11,838,023 11,838,099 CM019251.1 Piliocolobus tephrosceles isolate RC106 chromosome 12, whole genome shotgun sequence Piliocolobus tephrosceles (Ugandan red Colobus) ENA graphic
187
NW_012267234.1 81.70 full 4,277,804 4,277,728 NW_012267234.1 Dipodomys ordii isolate 6190 unplaced genomic scaffold, Dord_2.0 Scaffold18, whole genome shotgun sequence Dipodomys ordii (Ord's kangaroo rat) ENA graphic
188
CM009971.1 81.60 full 138,382,340 138,382,416 CM009971.1 Theropithecus gelada isolate Dixy chromosome X, whole genome shotgun sequence Theropithecus gelada (gelada baboon) ENA graphic
189
CM014356.1 81.60 full 137,018,820 137,018,896 CM014356.1 Macaca mulatta isolate AG07107 chromosome X, whole genome shotgun sequence Macaca mulatta (Rhesus monkey) ENA graphic
190
CM018200.1 81.60 full 13,786,723 13,786,647 CM018200.1 Papio anubis isolate 15944 chromosome X, whole genome shotgun sequence Papio anubis (Olive baboon) ENA graphic
191
CM021959.1 81.60 full 134,067,503 134,067,579 CM021959.1 Macaca fascicularis isolate cy0333 breed Mauritian cynomolgus macaque chromosome X, whole genome shotgun sequence Macaca fascicularis (crab-eating macaque) ENA graphic
192
KN979181.1 81.60 full 911,979 911,903 KN979181.1 Mandrillus leucophaeus isolate KB7577 unplaced genomic scaffold Scaffold816, whole genome shotgun sequence Mandrillus leucophaeus (drill) ENA graphic
193
KQ006312.1 81.60 full 1,141,896 1,141,820 KQ006312.1 Macaca nemestrina isolate M95218 unplaced genomic scaffold Scaffold257, whole genome shotgun sequence Macaca nemestrina (pig-tailed macaque) ENA graphic
194
KQ010259.1 81.60 full 5,719,219 5,719,295 KQ010259.1 Cercocebus atys isolate FAK unplaced genomic scaffold Scaffold170, whole genome shotgun sequence Cercocebus atys (sooty mangabey) ENA graphic
195
CM009955.1 81.40 full 18,101,433 18,101,509 CM009955.1 Theropithecus gelada isolate Dixy chromosome 6, whole genome shotgun sequence Theropithecus gelada (gelada baboon) ENA graphic
196
CM001652.1 81.30 full 17,236,456 17,236,380 Nomascus leucogenys chromosome 6, whole genome shotgun sequence. Nomascus leucogenys (Northern white-cheeked gibbon) ENA graphic
197
MPIZ01001698.1 80.30 full 1,967,529 1,967,453 MPIZ01001698.1 Prolemur simus strain KIAN8.4 scaffold1698, whole genome shotgun sequence Prolemur simus (greater bamboo lemur) ENA graphic
198
CM009267.2 79.70 full 18,562,817 18,562,893 CM009267.2 Pongo abelii isolate Susie chromosome 5, whole genome shotgun sequence Pongo abelii (Sumatran orangutan) ENA graphic
199
NW_004801655.1 79.20 full 10,138,765 10,138,697 NW_004801655.1 Mesocricetus auratus isolate Golden Hamster female 1 unplaced genomic scaffold, MesAur1.0 scaffold00052, whole genome shotgun sequence Mesocricetus auratus (golden hamster) ENA graphic
200
KZ196488.1 79.10 full 2,773,697 2,773,772 KZ196488.1 Aotus nancymaae isolate 86115 unplaced genomic scaffold Scaffold114.225, whole genome shotgun sequence Aotus nancymaae (Ma's night monkey) ENA graphic
201
NW_004525003.1 78.20 full 132,113 132,038 NW_004525003.1 Octodon degus isolate 3935 unplaced genomic scaffold, OctDeg1.0 scaffold00427, whole genome shotgun sequence Octodon degus (degu) ENA graphic
202
KV389745.1 77.20 full 1,478,728 1,478,653 KV389745.1 Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold319, whole genome shotgun sequence Cebus imitator (Panamanian white-faced capuchin) ENA graphic
203
NW_004525003.1 76.90 full 56,035 55,961 NW_004525003.1 Octodon degus isolate 3935 unplaced genomic scaffold, OctDeg1.0 scaffold00427, whole genome shotgun sequence Octodon degus (degu) ENA graphic
204
CM001944.2 76.00 full 17,721,493 17,721,569 Chlorocebus sabaeus isolate 1994-021 chromosome 4, whole genome shotgun sequence. Chlorocebus sabaeus ENA graphic
205
MPIZ01000292.1 75.90 full 229,349 229,423 MPIZ01000292.1 Prolemur simus strain KIAN8.4 scaffold292, whole genome shotgun sequence Prolemur simus (greater bamboo lemur) ENA graphic
206
CM007671.1 75.80 full 15,330,798 15,330,722 CM007671.1 Microcebus murinus isolate mixed chromosome 11, whole genome shotgun sequence Microcebus murinus (gray mouse lemur) ENA graphic
207
CM007673.1 74.70 full 46,422,778 46,422,704 CM007673.1 Microcebus murinus isolate mixed chromosome 13, whole genome shotgun sequence Microcebus murinus (gray mouse lemur) ENA graphic
208
KN298748.1 74.40 full 301,425 301,349 KN298748.1 Rhinopithecus roxellana isolate Xiao Hai unplaced genomic scaffold ENSRROG043834, whole genome shotgun sequence Rhinopithecus roxellana (golden snub-nosed monkey) ENA graphic
209
MCGX01004714.1 73.90 full 126,864 126,788 MCGX01004714.1 Rhinopithecus bieti isolate Rb0 scaffold_13749, whole genome shotgun sequence Rhinopithecus bieti (Black snub-nosed monkey) ENA graphic
210
NW_022436951.1 73.70 full 23,902,847 23,902,771 NW_022436951.1 Sapajus apella isolate SASKATOON/1434 unplaced genomic scaffold, GSC_monkey_1.0 scaffold11, whole genome shotgun sequence Cebus apella (Tufted capuchin) ENA graphic
211
KN980274.1 73.30 full 5,735,501 5,735,577 KN980274.1 Colobus angolensis palliatus isolate OR3802 unplaced genomic scaffold Scaffold180, whole genome shotgun sequence Colobus angolensis palliatus ENA graphic
212
CM003388.1 73.20 full 18,513,024 18,513,097 CM003388.1 Pan paniscus isolate Ulindi chromosome 5, whole genome shotgun sequence Pan paniscus (pygmy chimpanzee) ENA graphic
213
FR853088.3 73.20 full 77,339,650 77,339,577 Gorilla gorilla gorilla genomic chromosome, chr17, whole genome shotgun sequence Gorilla gorilla gorilla (western lowland gorilla) ENA graphic
214
JH721943.1 72.60 full 327,516 327,440 JH721943.1 Chinchilla lanigera unplaced genomic scaffold scaffold00082, whole genome shotgun sequence Chinchilla lanigera ENA graphic
215
JH721866.1 72.40 full 8,982,292 8,982,367 JH721866.1 Chinchilla lanigera unplaced genomic scaffold scaffold00005, whole genome shotgun sequence Chinchilla lanigera ENA graphic
216
NW_004525048.1 72.30 full 82,931 82,857 NW_004525048.1 Octodon degus isolate 3935 unplaced genomic scaffold, OctDeg1.0 scaffold00472, whole genome shotgun sequence Octodon degus (degu) ENA graphic
217
KV389461.1 72.00 full 5,986,113 5,986,037 KV389461.1 Cebus capucinus imitator isolate Cc_AM_T3 unplaced genomic scaffold Scaffold35, whole genome shotgun sequence Cebus imitator (Panamanian white-faced capuchin) ENA graphic
218
CM000319.3 71.60 full 18,519,674 18,519,747 Pan troglodytes isolate Yerkes chimp pedigree #C0471 (Clint) chromosome 5, whole genome shotgun sequence. Pan troglodytes (chimpanzee) ENA graphic
219
NW_022436947.1 70.60 full 4,576,942 4,576,868 NW_022436947.1 Sapajus apella isolate SASKATOON/1434 unplaced genomic scaffold, GSC_monkey_1.0 scaffold7, whole genome shotgun sequence Cebus apella (Tufted capuchin) ENA graphic
220
JH166615.1 70.00 full 315,350 315,273 JH166615.1 Heterocephalus glaber unplaced genomic scaffold scaffold1481, whole genome shotgun sequence Heterocephalus glaber (naked mole-rat) ENA graphic
221
JH166615.1 70.00 full 316,641 316,564 JH166615.1 Heterocephalus glaber unplaced genomic scaffold scaffold1481, whole genome shotgun sequence Heterocephalus glaber (naked mole-rat) ENA graphic
222
KZ202417.1 69.90 full 18,828,215 18,828,291 KZ202417.1 Aotus nancymaae isolate 86115 unplaced genomic scaffold Scaffold31, whole genome shotgun sequence Aotus nancymaae (Ma's night monkey) ENA graphic
223
NW_007251453.1 69.50 full 6,799 6,723 NW_007251453.1 Carlito syrichta isolate Samal-C Ts95f unplaced genomic scaffold, Tarsius_syrichta-2.0.1 Scaffold307357, whole genome shotgun sequence Carlito syrichta (Philippine tarsier) ENA graphic
224
CM000667.2 69.20 full 18,236,123 18,236,196 Homo sapiens chromosome 5, GRCh38 reference primary assembly. Homo sapiens (human) ENA graphic
225
JH378273.1 67.70 full 1,885,295 1,885,371 JH378273.1 Saimiri boliviensis boliviensis unplaced genomic scaffold scaffold00169, whole genome shotgun sequence Saimiri boliviensis boliviensis (Bolivian squirrel monkey) ENA graphic
226
KB360289.1 67.00 full 304,011 303,935 KB360289.1 Tupaia chinensis unplaced genomic scaffold Scaffold139457_1, whole genome shotgun sequence Tupaia chinensis (Chinese tree shrew) ENA graphic
227
CM001951.2 66.40 full 115,932,385 115,932,456 Chlorocebus sabaeus isolate 1994-021 chromosome X, whole genome shotgun sequence. Chlorocebus sabaeus ENA graphic
228
CM021916.1 64.90 full 183,795,209 183,795,133 CM021916.1 Callithrix jacchus isolate mCalJac1 chromosome 2, whole genome shotgun sequence Callithrix jacchus (white-tufted-ear marmoset) ENA graphic
229
JH174161.1 64.10 full 629,070 628,997 JH174161.1 Heterocephalus glaber unplaced genomic scaffold scaffold99, whole genome shotgun sequence Heterocephalus glaber (naked mole-rat) ENA graphic
230
JH725453.1 63.70 full 25,821,395 25,821,323 JH725453.1 Jaculus jaculus unplaced genomic scaffold scaffold00017, whole genome shotgun sequence Jaculus jaculus (lesser Egyptian jerboa) ENA graphic
231
CM025136.1 62.60 full 12,309,349 12,309,439 CM025136.1 Canis lupus familiaris isolate SID07034 breed Labrador retriever chromosome 37, whole genome shotgun sequence Canis lupus familiaris (dog) ENA graphic
232
CM025493.1 62.60 full 12,717,056 12,717,146 CM025493.1 Canis lupus dingo isolate Sandy chromosome 37, whole genome shotgun sequence Canis lupus dingo (dingo) ENA graphic
233
JAGFMF010011614.1 62.60 full 11,358,475 11,358,398 JAGFMF010011614.1 Galemys pyrenaicus isolate IBE-C5619 2611294, whole genome shotgun sequence Galemys pyrenaicus ENA graphic
234
NW_007245732.1 59.70 full 814,172 814,097 NW_007245732.1 Carlito syrichta isolate Samal-C Ts95f unplaced genomic scaffold, Tarsius_syrichta-2.0.1 Scaffold301636, whole genome shotgun sequence Carlito syrichta (Philippine tarsier) ENA graphic
235
KN122054.1 59.50 full 22,112,252 22,112,326 KN122054.1 Fukomys damarensis unplaced genomic scaffold scaffold185, whole genome shotgun sequence Fukomys damarensis (Damara mole-rat) ENA graphic
236
JAPFRF010000005.1 59.30 full 4,082,610 4,082,534 JAPFRF010000005.1 Phrynocephalus forsythii HIC_ASM_4, whole genome shotgun sequence Phrynocephalus forsythii ENA graphic
237
JH725477.1 59.20 full 8,558,669 8,558,599 JH725477.1 Jaculus jaculus unplaced genomic scaffold scaffold00041, whole genome shotgun sequence Jaculus jaculus (lesser Egyptian jerboa) ENA graphic
238
QVOM02000034.1 56.80 full 132,113,348 132,113,273 QVOM02000034.1 Salvator merianae strain LG2117 Scaffold_34, whole genome shotgun sequence Tupinambis merianae ENA graphic
239
CM014748.1 56.60 full 2,848,903 2,848,824 CM014748.1 Podarcis muralis ecotype yellow chromosome 6, whole genome shotgun sequence Podarcis muralis ENA graphic
240
CM014748.1 56.60 full 2,881,645 2,881,566 CM014748.1 Podarcis muralis ecotype yellow chromosome 6, whole genome shotgun sequence Podarcis muralis ENA graphic
241
OX395131.1 56.60 full 3,067,411 3,067,332 OX395131.1 Podarcis lilfordi genome assembly, chromosome: 6 Podarcis lilfordi ENA graphic
242
NW_004524695.1 56.40 full 362,203 362,128 NW_004524695.1 Octodon degus isolate 3935 unplaced genomic scaffold, OctDeg1.0 scaffold00119, whole genome shotgun sequence Octodon degus (degu) ENA graphic
243
JH721906.1 56.20 full 9,611,641 9,611,565 JH721906.1 Chinchilla lanigera unplaced genomic scaffold scaffold00045, whole genome shotgun sequence Chinchilla lanigera ENA graphic
244
GL873568.1 55.70 full 7,347,151 7,347,076 Otolemur garnettii unplaced genomic scaffold scaffold00049, whole genome shotgun sequence. Otolemur garnettii (small-eared galago) ENA graphic
245
VZTY01011308.1 55.30 full 43,244 43,319 VZTY01011308.1 Turnix velox voucher MVMA:130 isolate B10K-DU-029-46 scaffold26153, whole genome shotgun sequence Turnix velox (little buttonquail) ENA graphic
246
NW_006408570.1 55.10 full 12,822,510 12,822,580 NW_006408570.1 Chrysochloris asiatica unplaced genomic scaffold, ChrAsi1.0 scaffold00052, whole genome shotgun sequence Chrysochloris asiatica ENA graphic
247
VXBH01008625.1 55.10 full 52,554 52,629 VXBH01008625.1 Rynchops niger voucher USNM:637251 isolate B10K-DU-002-16 scaffold674, whole genome shotgun sequence Rynchops niger (black skimmer) ENA graphic
248
VXBO01010082.1 54.70 full 16,000 15,924 VXBO01010082.1 Rhinoptilus africanus voucher USNM:642451 isolate B10K-DU-002-36 scaffold5225, whole genome shotgun sequence Rhinoptilus africanus (double-banded courser) ENA graphic
249
CM000940.1 54.50 full 71,380,400 71,380,323 Anolis carolinensis chromosome 4, whole genome shotgun sequence. Anolis carolinensis (green anole) ENA graphic
250
VYZM01004398.1 54.30 full 3,086 3,161 VYZM01004398.1 Dromas ardeola voucher USNM:647762 isolate B10K-DU-012-55 scaffold3011, whole genome shotgun sequence Dromas ardeola ENA graphic
251
VZZW01000271.1 54.30 full 891,603 891,528 VZZW01000271.1 Phaetusa simplex voucher USNM:637171 isolate B10K-DU-009-16 scaffold_244, whole genome shotgun sequence Phaetusa simplex (large-billed tern) ENA graphic
252
NW_018150936.1 54.20 full 950,574 950,497 NW_018150936.1 Pogona vitticeps unplaced genomic scaffold, pvi1.1.0 contig30912, whole genome shotgun sequence Pogona vitticeps (central bearded dragon) ENA graphic
253
KK841893.1 54.10 full 5,930 6,003 KK841893.1 Acanthisitta chloris isolate BGI_N310 unplaced genomic scaffold scaffold29237, whole genome shotgun sequence Acanthisitta chloris ENA graphic
254
VWPW01005245.1 54.00 full 172,958 172,880 VWPW01005245.1 Crypturellus undulatus voucher MSB:37135 isolate B10K-MSB-37135 scaffold36, whole genome shotgun sequence Crypturellus undulatus ENA graphic
255
CM009951.1 53.90 full 150,016,347 150,016,411 CM009951.1 Theropithecus gelada isolate Dixy chromosome 2, whole genome shotgun sequence Theropithecus gelada (gelada baboon) ENA graphic
256
CM018181.1 53.90 full 149,661,520 149,661,584 CM018181.1 Papio anubis isolate 15944 chromosome 2, whole genome shotgun sequence Papio anubis (Olive baboon) ENA graphic
257
KN974384.1 53.70 full 183,796 183,749 KN974384.1 Mandrillus leucophaeus isolate KB7577 unplaced genomic scaffold Scaffold226, whole genome shotgun sequence Mandrillus leucophaeus (drill) ENA graphic
258
KV943259.1 53.60 full 46,688 46,617 KV943259.1 Rana catesbeiana isolate Bruno unplaced genomic scaffold Rc-01r160223s0021991, whole genome shotgun sequence Rana catesbeiana (bullfrog) ENA graphic
259
JH224678.1 53.50 full 3,754,762 3,754,840 Pelodiscus sinensis unplaced genomic scaffold scaffold281, whole genome shotgun sequence. Pelodiscus sinensis (Chinese softshell turtle) ENA graphic
260
JH170974.1 53.20 full 173,159 173,084 JH170974.1 Heterocephalus glaber unplaced genomic scaffold scaffold16, whole genome shotgun sequence Heterocephalus glaber (naked mole-rat) ENA graphic
261
VZSD01013135.1 53.00 full 151,742 151,667 VZSD01013135.1 Alca torda voucher C:Vinge78 isolate OUT-0003 scaffold4998, whole genome shotgun sequence Alca torda ENA graphic
262
VXAA01001077.1 52.90 full 178,132 178,054 VXAA01001077.1 Anseranas semipalmata voucher USNM:623235 isolate B10K-DU-001-57 scaffold61, whole genome shotgun sequence Anseranas semipalmata (magpie goose) ENA graphic
263
VXAL01012489.1 52.90 full 159,662 159,740 VXAL01012489.1 Chauna torquata voucher USNM:614546 isolate B10K-DU-011-36 scaffold1803, whole genome shotgun sequence Chauna torquata (southern screamer) ENA graphic
264
WBMW01001713.1 52.90 full 633,056 632,978 WBMW01001713.1 Penelope pileata voucher USNM:572502 isolate B10K-DU-001-08 scaffold212, whole genome shotgun sequence Penelope pileata ENA graphic
265
KZ155910.1 52.90 full 1,743,221 1,743,299 KZ155910.1 Anser cygnoides isolate SCWG-2014 breed Sichuan white goose unplaced genomic scaffold scaffold69, whole genome shotgun sequence Anser cygnoides (Chinese goose) ENA graphic
266
NXHY01000002.1 52.90 full 19,984,315 19,984,237 NXHY01000002.1 Anser brachyrhynchus strain PFG001 scaffold_1, whole genome shotgun sequence Anser brachyrhynchus (pink-footed goose) ENA graphic
267
VXAU01001621.1 52.80 full 49,526 49,453 VXAU01001621.1 Formicarius rufipectus voucher USNM:613308 isolate B10K-DU-001-43 scaffold2499, whole genome shotgun sequence Formicarius rufipectus ENA graphic
268
VWZJ01003812.1 52.70 full 10,887 10,810 VWZJ01003812.1 Hemiprocne comata voucher USNM:607338 isolate B10K-DU-001-23 scaffold275, whole genome shotgun sequence Hemiprocne comata ENA graphic
269
WBNI01000042.1 52.40 full 1,550,255 1,550,330 WBNI01000042.1 Eolophus roseicapilla voucher USNM:632230 isolate B10K-DU-025-06 scaffold_35, whole genome shotgun sequence Eolophus roseicapillus (Galah) ENA graphic
270
KK684944.1 52.30 full 7,797 7,874 KK684944.1 Leptosomus discolor isolate BGI_N330 unplaced genomic scaffold scaffold23937, whole genome shotgun sequence Leptosomus discolor ENA graphic
271
KK939260.1 52.20 full 16,485 16,410 KK939260.1 Nestor notabilis isolate BGI_N333 unplaced genomic scaffold scaffold21995, whole genome shotgun sequence Nestor notabilis ENA graphic
272
VZRH01003229.1 52.20 full 403,622 403,697 VZRH01003229.1 Urocynchramus pylzowi voucher IZCAS:653 isolate B10K-DU-012-38 scaffold807, whole genome shotgun sequence Urocynchramus pylzowi ENA graphic
273
LR778266.1 52.10 full 32,499,831 32,499,903 LR778266.1 Coregonus sp. 'balchen' genome assembly, chromosome: 14 Coregonus sp. 'balchen' ENA graphic
274
VZUD01000027.1 52.00 full 398,949 399,024 VZUD01000027.1 Cepphus grylle isolate OUT-0020 scaffold90_cov51, whole genome shotgun sequence Cepphus grylle ENA graphic
275
JH556605.1 51.90 full 286,665 286,590 JH556605.1 Melopsittacus undulatus unplaced genomic scaffold budgerigar_v6.3_scf900160277058, whole genome shotgun sequence Melopsittacus undulatus (budgerigar) ENA graphic
276
VYZS01325787.1 51.90 full 1,341 1,266 VYZS01325787.1 Neodrepanis coruscans voucher FMNH:AVES:345711 isolate B10K-DU-002-79 C19707425, whole genome shotgun sequence Neodrepanis coruscans (wattled asity) ENA graphic
277
KL372813.1 51.90 full 10,702 10,625 KL372813.1 Apaloderma vittatum isolate BGI_N311 unplaced genomic scaffold scaffold11760, whole genome shotgun sequence Apaloderma vittatum ENA graphic
278
WBMZ01001873.1 51.80 full 6,118 6,193 WBMZ01001873.1 Atrichornis clamosus isolate B10K-DU-029-61 scaffold7033, whole genome shotgun sequence Atrichornis clamosus ENA graphic
279
SCEB01214181.1 51.60 full 154,252 154,326 SCEB01214181.1 Acipenser ruthenus isolate WHYD16114868_AA scaffold1113, whole genome shotgun sequence Acipenser ruthenus (sterlet) ENA graphic
280
VWZT01011989.1 51.50 full 111,487 111,562 VWZT01011989.1 Pachycephala philippinensis voucher USNM:607512 isolate B10K-DU-001-28 scaffold4802, whole genome shotgun sequence Pachycephala philippinensis ENA graphic
281
JH126755.1 51.40 full 1,684,625 1,684,697 JH126755.1 Latimeria chalumnae unplaced genomic scaffold scaffold00194, whole genome shotgun sequence Latimeria chalumnae (coelacanth) ENA graphic
282
KN126173.1 51.40 full 2,596,928 2,596,851 KN126173.1 Chaetura pelagica isolate M959 unplaced genomic scaffold scaffold363, whole genome shotgun sequence Chaetura pelagica (chimney swift) ENA graphic
283
VWZS01004484.1 51.20 full 862,201 862,278 VWZS01004484.1 Rhabdornis inornatus voucher USNM:607544 isolate B10K-DU-001-29 scaffold866, whole genome shotgun sequence Rhabdornis inornatus ENA graphic
284
VZSJ01002315.1 51.10 full 447,729 447,654 VZSJ01002315.1 Pheucticus melanocephalus isolate OUT-0018 scaffold7275, whole genome shotgun sequence Pheucticus melanocephalus ENA graphic
285
CM028489.1 51.10 full 7,418,420 7,418,498 CM028489.1 Gallus gallus isolate bGalGal1 chromosome 8, whole genome shotgun sequence Gallus gallus (chicken) ENA graphic
286
KZ860780.1 51.10 full 391,772 391,694 KZ860780.1 Chrysolophus pictus breed wild golden pheasant unplaced genomic scaffold scaffold95, whole genome shotgun sequence Chrysolophus pictus (golden pheasant) ENA graphic
287
QCWP01000068.1 51.10 full 643,363 643,285 QCWP01000068.1 Phasianus colchicus isolate SZU-A5-319 scaffold82_cov58, whole genome shotgun sequence Phasianus colchicus (Ring-necked pheasant) ENA graphic
288
QJSC01002381.1 51.00 full 16,381,208 16,381,283 QJSC01002381.1 Calidris pygmaea strain Meinypilgyno scaf_10611, whole genome shotgun sequence Eurynorhynchus pygmeus ENA graphic
289
VXAK01015759.1 51.00 full 139,581 139,656 VXAK01015759.1 Arenaria interpres voucher USNM:607650 isolate B10K-DU-005-73 scaffold9472, whole genome shotgun sequence Arenaria interpres (ruddy turnstone) ENA graphic
290
VZRU01010649.1 51.00 full 11,406 11,481 VZRU01010649.1 Pedionomus torquatus voucher MVMA:2319 isolate B10K-DU-029-80 scaffold4581, whole genome shotgun sequence Pedionomus torquatus (plains-wanderer) ENA graphic
291
VWZA01000395.1 50.90 full 220,112 220,037 VWZA01000395.1 Oceanites oceanicus voucher LSUMZ:Ornithology:B46846 isolate B10K-CU-031-11 scaffold_388, whole genome shotgun sequence Oceanites oceanicus ENA graphic
292
VYZH01000893.1 50.90 full 69,708 69,783 VYZH01000893.1 Probosciger aterrimus voucher USNM:615002 isolate B10K-DU-017-47 scaffold_877, whole genome shotgun sequence Probosciger aterrimus ENA graphic
293
VZZT01000158.1 50.90 full 310,441 310,366 VZZT01000158.1 Fregetta grallaria voucher USNM:615151 isolate B10K-DU-006-09 scaffold_153, whole genome shotgun sequence Fregetta grallaria ENA graphic
294
LR735557.1 50.90 full 61,524,704 61,524,629 LR735557.1 Sarcophilus harrisii genome assembly, chromosome: 4 Sarcophilus harrisii (Tasmanian devil) ENA graphic
295
CM040764.1 50.80 full 19,187,833 19,187,761 CM040764.1 Albula goreensis ecotype Florida chromosome 24, whole genome shotgun sequence Albula goreensis ENA graphic
296
VWPQ01004056.1 50.80 full 67,494 67,419 VWPQ01004056.1 Ceuthmochares aereus voucher LSUMZ:Ornithology:B45261 isolate B10K-CU-031-02 scaffold_4050, whole genome shotgun sequence Ceuthmochares aereus ENA graphic
297
WAAB01002280.1 50.80 full 868 793 WAAB01002280.1 Piaya cayana voucher USNM:632527 isolate B10K-DU-008-47 scaffold9875, whole genome shotgun sequence Piaya cayana (squirrel cuckoo) ENA graphic
298
QZWQ01000180.1 50.60 full 1,330,862 1,330,940 QZWQ01000180.1 Pavo cristatus isolate SKPea2016_SI scaffold22_len1268288_cov0, whole genome shotgun sequence Pavo cristatus (Indian peafowl) ENA graphic
299
QZWQ01000213.1 50.60 full 3,052 3,130 QZWQ01000213.1 Pavo cristatus isolate SKPea2016_SI scaffold259_len197532_cov0_single, whole genome shotgun sequence Pavo cristatus (Indian peafowl) ENA graphic
300
QZWQ01009865.1 50.60 full 3,177 3,255 QZWQ01009865.1 Pavo cristatus isolate SKPea2016_SI scaffold10117_len7922_cov0_single, whole genome shotgun sequence Pavo cristatus (Indian peafowl) ENA graphic

Note: this table contains only the first 300 sequences.

Alignment

There are various ways to view or download the seed alignments that we store. You can use a sequence viewer to look at them, or you can look at a plain text version of the sequence in a variety of different formats. More...

View options

You can view Rfam seed alignments in your browser in various ways. Choose the viewer that you want to use and click the "View" button to show the alignment in a pop-up window.

Viewer:

Formatting options

You can view or download Rfam seed alignments in several formats. Check either the "download" button, to save the formatted alignment, or "view", to see it in your browser window, and click "Generate".

Alignment format:
Download/view:

Download

Download a gzip-compressed, Stockholm-format file containing the seed alignment for this family. You may find RALEE useful when viewing sequence alignments.

Submit a new alignment

We're happy receive updated seed alignments for new or existing families. Submit your new alignment and we'll take a look.

Secondary structure

This section shows a variety of different secondary structure representations for this family. More...

You can view the secondary structure of the family using the VARNA applet. You can see more information about VARNA iself here.

Current Rfam structure

1 out of 7 basepairs are significant at E-value=0.05

Y R R R A U A Y A U G A U G A U C C A Y Y C A R C U U G A A C U C U C U C A C U G A U A Y U U G A U G A Y R A A A A G A U C U G A U A U U Y U R 5'

R-scape optimised structure

1 out of 1 basepairs are significant at E-value=0.05

Y R R R A U A Y A U G A U G A U C C A Y Y C A R C U U G A A C U C U C U C A C U G A U A Y U U G A U G A Y R A A A A G A U C U G A U A U U Y U R 5'
  • Colours
  •  Statistically significant basepair with covariation
  •  97% conserved nucleotide
  •  90% conserved nucleotide
  •  75% conserved nucleotide
  •  50% conserved nucleotide
  • Nucleotides
  • R: A or G
  • Y: C or U

Tip: The diagrams are interactive:
you can pan and zoom to see more details
or hover over nucleotides and basepairs.

R-scape is a method for testing whether covariation analysis supports the presence of a conserved RNA secondary structure. This page shows R-scape analysis of the secondary structure from the Rfam seed alignment and a new structure with covariation support that is compatible with the same alignment.

To find out more about the method, see the R-scape paper by Rivas et al., 2016. The structures are visualised using R2R.

Species distribution

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Lineage

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Colour assignments

Archea Archea Eukaryota Eukaryota
Bacteria Bacteria Other sequences Other sequences
Viruses Viruses Unclassified Unclassified
Viroids Viroids Unclassified sequence Unclassified sequence

Selections

Click on a node to select that node and its sub-tree.

Clear selection

This visualisation provides a simple graphical representation of the distribution of this family across species. You can find the original interactive tree in the adjacent tab. More...

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The tree shows the occurrence of this RNA across different species. More...

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Please note: for large trees this can take some time. While the tree is loading, you can safely switch away from this tab but if you browse away from the family page entirely, the tree will not be loaded.

Trees

This page displays the predicted phylogenetic tree for the alignment. More...

This tree was built using the fasttree method.

Label the trees using or

Note: You can also download the data file for the seed tree.

References

This section shows the database cross-references that we have for this Rfam family.

Literature references

  1. Smith CM, Steitz JA; Mol Cell Biol 1998;18:6897-6909. Classification of gas5 as a multi-small-nucleolar-RNA (snoRNA) host gene and a member of the 5'-terminal oligopyrimidine gene family reveals common features of snoRNA host genes. PUBMED:9819378

External database links

Curation and family details

This section shows the detailed information about the Rfam family. We're happy to receive updated or improved alignments for new or existing families. Submit your new alignment and we'll take a look.

Curation

Seed source Griffiths-Jones SR
Structure source Predicted; PFOLD
Type Gene; snRNA; snoRNA; CD-box;
Author Griffiths-Jones SRORCID logo
Alignment details
Alignment Number of
sequences
full 317
seed 22

Model information

Build commands
cmbuild -F CM SEED
cmcalibrate --mpi CM
Search command
cmsearch --cpu 4 --verbose --nohmmonly -T 29.50 -Z 2958934 CM SEQDB
Gathering cutoff 50.0
Trusted cutoff 50.0
Noise cutoff 49.7
Covariance model Download
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