INFERNAL1/a [1.1.4 | Dec 2020] NAME msr ACC RF00170 DESC Retron msr RNA STATES 211 NODES 56 CLEN 69 W 131 ALPH RNA RF no CONS yes MAP yes DATE Tue Jan 5 11:00:49 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.5/Update_families/RF00170/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 3.065918 CKSUM 156557289 NULL 0.000 0.000 0.000 0.000 GA 52.00 TC 52.10 NC 50.30 EFP7GF -9.5878 0.71899 ECMLC 0.60125 -6.14909 3.23377 1600000 338237 0.003548 ECMGC 0.38450 -16.49934 -2.49091 1600000 87357 0.004579 ECMLI 0.55457 -4.19244 5.16076 1600000 214717 0.005589 ECMGI 0.43070 -10.65728 1.18970 1600000 65769 0.006082 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 131 209 -7.351 -7.559 -0.040 -5.973 IL 1 1 2 1 4 1 28 133 211 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 133 211 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 27 131 209 -8.342 -0.016 -6.997 0.084 -2.028 1.222 -1.462 D 4 2 3 5 3 0 22 129 207 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 26 132 210 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 26 130 208 -8.711 -0.015 -7.029 -2.665 1.801 -3.488 -1.901 D 7 5 3 8 3 0 21 129 206 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 25 131 208 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 83 - a - - MR 9 8 3 11 5 1 25 129 207 -7.429 -0.031 -7.244 -7.456 -8.348 0.356 -0.176 -0.652 0.261 D 10 8 3 11 5 0 19 127 205 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 23 129 207 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 82 u a - - MP 12 11 3 16 6 2 25 128 206 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -2.025 -2.159 -2.193 0.902 -2.045 -3.021 1.492 -2.453 -2.252 0.949 -2.805 -0.668 1.673 0.962 0.361 -0.417 ML 13 11 3 16 6 1 20 127 204 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 21 126 204 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 16 124 201 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 22 128 205 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 22 127 205 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 81 c g - - MP 18 17 6 22 4 2 23 126 204 -7.239 -8.484 -0.062 -4.938 -4.348 -4.441 -4.066 -0.775 2.247 -4.473 2.814 -3.594 -4.117 -0.663 -4.413 -2.612 0.659 -4.417 -0.506 -2.991 ML 19 17 6 22 4 1 18 125 203 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 20 125 203 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 16 123 201 -12.737 -14.007 -2.036 -0.404 IL 22 22 5 22 4 1 20 125 203 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 21 126 203 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 80 - c - - MR 24 23 6 26 5 1 23 124 202 -7.429 -0.031 -7.244 -7.456 -8.348 -1.074 0.826 -1.908 0.571 D 25 23 6 26 5 0 15 122 200 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 20 124 202 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 79 u a - - MP 27 26 3 31 6 2 23 123 201 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -2.751 -2.830 -2.854 0.511 -2.381 -3.631 1.618 -2.904 -2.887 0.609 -3.404 -1.129 2.219 -3.027 1.131 0.576 ML 28 26 3 31 6 1 17 121 199 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 17 121 199 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 12 117 195 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 19 122 200 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 19 122 200 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 78 U A - - MP 33 32 6 37 6 2 21 121 199 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -5.165 -5.003 -4.889 -1.243 -3.646 -5.360 0.691 -4.401 -4.887 -1.102 -5.211 -2.874 3.648 -5.268 -1.300 -3.586 ML 34 32 6 37 6 1 17 119 197 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 16 119 197 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 12 115 193 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 18 121 198 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 18 120 198 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 77 U G - - MP 39 38 6 43 6 2 19 119 197 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -4.849 -4.799 -4.381 -1.070 -2.940 -4.691 1.358 -3.771 -4.431 -1.002 -4.648 -2.783 0.417 -4.859 3.378 -3.268 ML 40 38 6 43 6 1 16 117 195 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 15 117 195 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 12 114 192 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 17 119 196 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 17 118 196 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 76 A U - - MP 45 44 6 49 6 2 18 117 195 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -4.515 -3.384 -4.455 3.653 -5.192 -6.347 -0.842 -4.446 -4.347 0.292 -4.928 -0.761 -1.254 -5.393 -2.779 -3.267 ML 46 44 6 49 6 1 15 116 194 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 14 115 193 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 11 113 191 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 16 117 194 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 16 116 194 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 75 G U - - MP 51 50 6 55 4 2 16 115 193 -7.351 -7.559 -0.040 -5.973 -4.102 -2.769 -4.295 0.788 -5.384 -6.184 -0.921 -4.273 -3.867 0.701 -4.424 3.452 -1.255 -5.228 -2.855 -2.922 ML 52 50 6 55 4 1 14 114 192 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 12 113 191 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 11 112 190 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 15 115 193 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 14 115 193 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - C - - - ML 57 56 6 59 3 1 14 113 191 -8.342 -0.016 -6.997 -2.665 1.801 -3.488 -1.901 D 58 56 6 59 3 0 10 111 189 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 14 114 192 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 11 - G - - - ML 60 59 3 62 3 1 13 112 190 -8.342 -0.016 -6.997 -0.923 -1.722 1.262 -0.376 D 61 59 3 62 3 0 10 110 188 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 13 113 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 12 - U - - - ML 63 62 3 65 3 1 12 111 189 -8.342 -0.016 -6.997 -0.575 -1.285 -1.811 1.397 D 64 62 3 65 3 0 9 109 187 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 12 112 190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 13 - u - - - ML 66 65 3 68 3 1 11 110 188 -8.342 -0.362 -2.191 0.578 -1.041 -1.261 0.681 D 67 65 3 68 3 0 9 109 186 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 12 111 189 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 14 - U - - - ML 69 68 3 71 3 1 11 110 188 -2.324 -0.339 -6.654 -0.062 -0.900 -1.282 1.067 D 70 68 3 71 3 0 8 108 186 -7.997 -0.313 -2.389 IL 71 71 3 71 3 1 11 111 188 -0.883 -1.204 -5.404 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - G - - - ML 72 71 3 74 3 1 10 108 186 -8.342 -0.016 -6.997 -2.360 -3.685 1.851 -3.067 D 73 71 3 74 3 0 6 106 183 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 9 109 186 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - G - - - ML 75 74 3 77 3 1 9 107 185 -8.342 -0.016 -6.997 -2.360 -3.685 1.851 -3.067 D 76 74 3 77 3 0 5 104 182 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 9 108 185 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - A - - - ML 78 77 3 80 3 1 8 106 184 -8.342 -0.016 -6.997 1.416 -0.871 -1.612 -1.130 D 79 77 3 80 3 0 4 103 181 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 8 107 184 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - c - - - ML 81 80 3 83 3 1 7 105 183 -8.342 -0.119 -3.713 -1.074 0.826 -1.908 0.571 D 82 80 3 83 3 0 4 101 179 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 7 106 184 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - u - - - ML 84 83 3 86 3 1 7 104 182 -8.240 -0.260 -2.629 -0.544 -1.049 0.072 0.832 D 85 83 3 86 3 0 3 98 176 -7.040 -2.553 -0.283 IL 86 86 3 86 3 1 8 105 183 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - u - - - ML 87 86 3 89 3 1 7 104 182 -8.000 -0.020 -6.654 0.050 -0.797 -0.498 0.749 D 88 86 3 89 3 0 3 93 171 -7.997 -3.510 -0.139 IL 89 89 3 89 3 1 7 104 182 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - a - - - ML 90 89 3 92 3 1 6 103 181 -1.695 -0.554 -6.654 0.389 -0.343 -0.268 0.099 D 91 89 3 92 3 0 3 84 161 -7.997 -0.313 -2.389 IL 92 92 3 92 3 1 7 107 185 -0.342 -2.307 -6.829 0.000 0.000 0.000 0.000 [ MATL 24 ] 35 - a - - - ML 93 92 3 95 3 1 5 54 73 -8.342 -0.016 -6.997 0.440 -1.038 0.114 0.103 D 94 92 3 95 3 0 0 53 72 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 5 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 36 - a - - - ML 96 95 3 98 3 1 4 53 72 -8.342 -0.016 -6.997 0.404 -1.025 0.109 0.147 D 97 95 3 98 3 0 0 52 71 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 4 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 37 - U - - - ML 99 98 3 101 3 1 4 52 71 -8.342 -0.016 -6.997 -0.693 -1.326 -1.882 1.439 D 100 98 3 101 3 0 0 50 70 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 3 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 38 - U - - - ML 102 101 3 104 3 1 3 51 70 -8.342 -0.016 -6.997 -1.175 -0.166 -1.945 1.267 D 103 101 3 104 3 0 0 49 69 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 2 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 39 - a - - - ML 105 104 3 107 3 1 2 50 69 -3.306 -0.313 -3.411 0.905 -0.671 -0.663 -0.205 D 106 104 3 107 3 0 0 48 67 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 3 50 69 -1.816 -0.573 -4.516 0.000 0.000 0.000 0.000 [ MATL 29 ] 41 - a - - - ML 108 107 3 110 3 1 3 48 67 -8.212 -0.017 -6.867 0.612 0.416 -1.299 -0.453 D 109 107 3 110 3 0 0 47 66 -7.200 -0.597 -1.591 IL 110 110 3 110 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 42 - G - - - ML 111 110 3 113 3 1 2 47 66 -8.342 -0.016 -6.997 0.001 -2.072 1.269 -1.508 D 112 110 3 113 3 0 0 46 65 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 43 - U - - - ML 114 113 3 116 3 1 2 46 65 -8.342 -0.016 -6.997 -1.328 -0.560 -2.084 1.426 D 115 113 3 116 3 0 0 45 64 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 44 - C - - - ML 117 116 3 119 3 1 2 45 64 -8.342 -0.016 -6.997 -2.665 1.801 -3.488 -1.901 D 118 116 3 119 3 0 0 44 63 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 45 - U - - - ML 120 119 3 122 3 1 1 44 63 -8.711 -0.015 -7.029 -2.206 -2.080 -2.967 1.773 D 121 119 3 122 3 0 0 43 62 -5.620 -0.734 -1.403 IL 122 122 3 122 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 74 - A - - MR 123 122 3 125 3 1 1 43 62 -8.711 -0.015 -7.029 1.841 -3.136 -2.694 -2.757 D 124 122 3 125 3 0 0 41 60 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 73 - U - - MR 126 125 3 128 3 1 1 42 61 -8.711 -0.015 -7.029 -2.206 -2.080 -2.967 1.773 D 127 125 3 128 3 0 0 40 59 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 72 - U - - MR 129 128 3 131 3 1 1 41 60 -8.711 -0.015 -7.029 -2.206 -2.080 -2.967 1.773 D 130 128 3 131 3 0 0 39 58 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 71 - u - - MR 132 131 3 134 3 1 1 40 59 -8.711 -0.015 -7.029 -0.343 0.499 -1.447 0.517 D 133 131 3 134 3 0 0 38 57 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 70 - A - - MR 135 134 3 137 3 1 1 39 58 -8.711 -0.015 -7.029 1.841 -3.136 -2.694 -2.757 D 136 134 3 137 3 0 0 37 56 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 69 - A - - MR 138 137 3 140 3 1 1 38 57 -8.711 -0.015 -7.029 1.841 -3.136 -2.694 -2.757 D 139 137 3 140 3 0 0 36 55 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 68 - U - - MR 141 140 3 143 3 1 1 37 56 -8.711 -0.015 -7.029 -0.575 -1.285 -1.811 1.397 D 142 140 3 143 3 0 0 35 54 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 67 - C - - MR 144 143 3 146 5 1 1 36 55 -7.429 -0.031 -7.244 -7.456 -8.348 -1.271 1.384 -1.219 -0.874 D 145 143 3 146 5 0 0 35 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 66 a u - - MP 147 146 3 151 6 2 2 35 54 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -3.594 -2.958 -3.628 2.951 -3.418 -4.592 0.844 -3.650 -3.595 1.049 -4.093 -0.623 1.266 -3.935 -1.116 -2.530 ML 148 146 3 151 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 47 65 G C - - MP 153 152 6 157 6 2 2 33 52 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -5.476 -3.452 -5.684 -0.312 -6.256 -4.968 -1.438 -5.951 -4.774 3.774 -5.066 -1.190 -1.807 -4.940 -3.522 -4.550 ML 154 152 6 157 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 48 64 U A - - MP 159 158 6 163 6 2 2 31 50 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -5.165 -5.003 -4.889 -1.243 -3.646 -5.360 0.691 -4.401 -4.887 -1.102 -5.211 -2.874 3.648 -5.268 -1.300 -3.586 ML 160 158 6 163 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 49 63 C G - - MP 165 164 6 169 4 2 2 29 48 -7.351 -7.559 -0.040 -5.973 -4.264 -4.217 -4.043 -0.372 -2.803 -4.534 3.154 -3.569 -4.051 -0.176 -4.394 -2.152 1.909 -4.355 -0.456 -2.881 ML 166 164 6 169 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 4 1 1 29 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 168 164 6 169 4 0 0 28 47 -4.568 -4.250 -2.265 -0.520 IL 169 169 5 169 4 1 1 31 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 170 170 6 170 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - G - - - ML 171 170 6 173 3 1 1 26 45 -8.711 -0.246 -2.697 -2.360 -3.685 1.851 -3.067 D 172 170 6 173 3 0 0 25 44 -5.620 -0.734 -1.403 IL 173 173 3 173 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 62 - A - - MR 174 173 3 176 5 1 1 25 44 -7.213 -0.036 -7.028 -7.241 -8.132 1.772 -2.648 -2.252 -2.218 D 175 173 3 176 5 0 0 24 43 -6.260 -0.334 -3.886 -5.317 -3.312 IR 176 176 3 176 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 51 61 g c - - MP 177 176 3 181 6 2 2 24 43 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -3.084 -0.223 -3.185 0.879 -3.475 -3.862 0.385 -3.572 0.220 2.940 -3.692 -0.352 0.164 -3.210 -1.344 -2.275 ML 178 176 3 181 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 3 181 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 3 181 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 60 G C - - MP 183 182 6 187 6 2 2 22 41 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -5.476 -3.452 -5.684 -0.312 -6.256 -4.968 -1.438 -5.951 -4.774 3.774 -5.066 -1.190 -1.807 -4.940 -3.522 -4.550 ML 184 182 6 187 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 53 59 C G - - MP 189 188 6 193 6 2 2 20 39 -9.275 -9.214 -0.019 -7.991 -8.271 -8.666 -4.323 -4.339 -4.067 -0.562 -2.800 -4.511 3.073 -3.585 -4.094 -0.399 -4.411 -2.371 0.769 -4.398 1.824 -2.942 ML 190 188 6 193 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 54 58 g c - - MP 195 194 6 199 4 2 2 18 37 -7.351 -7.559 -0.040 -5.973 -3.773 -2.870 -3.877 0.611 -4.116 -4.748 0.027 -4.041 2.080 2.757 -4.224 -0.512 -0.329 -4.113 -1.849 -2.790 ML 196 194 6 199 4 1 1 19 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 198 194 6 199 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 199 199 5 199 4 1 1 21 39 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 200 200 6 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - u - - - ML 201 200 6 203 3 1 1 14 33 -8.342 -0.016 -6.997 0.004 -0.970 -0.751 0.920 D 202 200 6 203 3 0 0 15 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - U - - - ML 204 203 3 206 3 1 1 13 31 -8.342 -0.016 -6.997 -2.206 -2.080 -2.967 1.773 D 205 203 3 206 3 0 0 13 32 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - U - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -0.767 -1.152 -0.448 1.157 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME msr ACC RF00170 DESC Retron msr RNA LENG 69 MAXL 180 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jan 5 11:00:49 2021 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 7 EFFN 4.016113 CKSUM 156557289 STATS LOCAL MSV -7.9738 0.71899 STATS LOCAL VITERBI -9.0260 0.71899 STATS LOCAL FORWARD -3.8304 0.71899 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44532 1.53712 1.42014 1.17880 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 0.00000 * 1 1.34733 2.99837 0.48193 2.62266 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 2 3.63151 0.09393 4.17648 3.04012 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 3 1.94179 1.62578 1.83336 0.69331 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 4 3.37505 0.22072 3.21991 2.08839 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 5 2.32489 1.63550 2.17120 0.52204 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 6 3.79318 2.56514 3.63398 0.13450 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 7 3.48437 1.92725 3.34910 0.23742 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 8 0.15372 3.62251 2.45501 3.50950 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 9 2.25178 3.52513 0.18663 3.33571 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 10 3.63151 0.09393 4.17648 3.04012 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 11 2.20726 2.77776 0.43797 1.70115 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 12 1.86843 2.45009 2.83907 0.35543 12 U - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 13 0.95733 2.21725 2.36726 0.88325 13 u - - - 1.38629 1.38629 1.38629 1.38629 0.29337 4.16112 1.43270 1.46634 0.26236 1.09861 0.40547 14 1.46134 2.11363 2.39035 0.58757 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.28783 1.46948 3.90871 1.12243 0.39377 0.12279 2.15807 15 3.34794 4.29928 0.07241 3.85776 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 16 3.34794 4.29928 0.07241 3.85776 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 17 0.34818 2.02112 2.69123 2.36738 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 18 2.31068 0.75042 2.91094 0.98293 21 c - - - 1.38629 1.38629 1.38629 1.38629 0.10921 4.16112 2.43192 1.46634 0.26236 1.09861 0.40547 19 1.87401 2.22572 1.30464 0.76092 22 u - - - 1.38629 1.38629 1.38629 1.38629 0.21835 4.08610 1.71842 1.46634 0.26236 2.03289 0.14036 20 1.36442 2.00496 1.73882 0.83453 23 u - - - 1.38629 1.38629 1.38629 1.38629 0.04096 3.90871 3.90871 1.46634 0.26236 2.85121 0.05951 21 1.10897 1.62263 1.56535 1.33292 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.45772 1.05783 3.90871 1.99888 0.14559 0.12279 2.15807 22 1.07147 2.18545 1.28002 1.32037 35 a - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 23 1.09857 2.17565 1.28319 1.28747 36 a - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 24 1.96528 2.48432 2.89750 0.32664 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 25 2.39987 1.50363 2.94111 0.45548 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 26 0.72221 1.87686 1.87888 1.56785 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.25587 2.12748 2.23850 0.24386 1.53060 1.09861 0.40547 27 0.93032 1.04073 2.41962 1.81142 41 a - - - 1.38629 1.38629 1.38629 1.38629 0.03490 4.06568 4.06568 1.46634 0.26236 0.25654 1.48601 28 1.41183 3.03108 0.44965 2.65656 42 G - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 29 2.52531 1.81845 3.05336 0.34180 43 U - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 30 3.63151 0.09393 4.17648 3.04012 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 31 3.24714 3.10810 3.78324 0.11241 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 32 0.56224 2.29200 1.94209 1.68416 46 A - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 33 3.02670 3.88962 0.09494 3.83301 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 34 3.80980 2.56699 3.64304 0.13364 48 U - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 35 3.01356 0.50555 2.79089 1.25057 49 C - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 36 3.34794 4.29928 0.07241 3.85776 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 37 1.73706 2.61523 0.40952 2.44362 51 G - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 38 2.99951 3.84969 0.09865 3.77930 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 39 3.17300 0.56586 2.99207 1.07861 53 C - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 40 2.35210 2.97886 0.22531 2.88760 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 41 1.39764 2.15298 1.93326 0.70926 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 42 3.24714 3.10810 3.78324 0.11241 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 43 2.07296 2.32986 1.70354 0.51946 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 44 1.01057 0.80697 2.79305 2.05145 58 c - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 45 2.28997 3.15598 0.21874 2.94506 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 46 3.96970 0.11606 3.72861 2.70790 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 47 1.87425 0.50781 2.43205 1.85240 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.21607 4.16112 1.72189 1.46634 0.26236 1.09861 0.40547 48 0.11211 3.54094 3.23649 3.27626 62 A - - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 0.16081 1.90689 49 1.37890 2.95778 0.45627 2.77155 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 50 0.15162 3.84232 2.40198 3.55062 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 51 4.01227 0.11403 3.74986 2.71571 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 52 1.80769 2.18406 2.11844 0.50556 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 53 2.54520 0.33637 2.31937 2.21778 67 C - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 54 1.86843 2.45009 2.83907 0.35543 68 U - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 55 0.07672 3.90171 3.56745 3.67237 69 A - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 56 0.07672 3.90171 3.56745 3.67237 70 A - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 57 1.68170 0.98339 2.51423 1.02449 71 c - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 58 3.24714 3.10810 3.78324 0.11241 72 U - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 59 3.24714 3.10810 3.78324 0.11241 73 U - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 60 0.07672 3.90171 3.56745 3.67237 74 A - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 61 3.52919 2.43196 3.31064 0.16686 75 U - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 62 3.72549 2.82390 3.42992 0.12315 76 U - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 63 2.52464 3.53883 0.16121 3.22503 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 64 0.15168 3.84157 2.40184 3.54984 78 A - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 65 1.07070 2.34353 1.07270 1.51796 79 a - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 66 2.31068 0.75042 2.91094 0.98293 80 c - - - 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 67 0.84969 3.37446 0.70374 3.13543 81 g - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 68 1.40091 1.26547 1.30967 1.60142 82 c - - > 1.38629 1.38629 1.38629 1.38629 0.03168 4.16112 4.16112 1.46634 0.26236 1.09861 0.40547 69 1.13047 1.49905 1.85749 1.21163 83 a - - : 1.38629 1.38629 1.38629 1.38629 0.01596 4.14541 * 1.46634 0.26236 0.00000 * //