INFERNAL1/a [1.1.4 | Dec 2020] NAME SNORD38 ACC RF00212 DESC Small nucleolar RNA SNORD38 STATES 214 NODES 64 CLEN 70 W 87 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:24:47 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.293457 CKSUM 2321779813 NULL 0.000 0.000 0.000 0.000 GA 44.00 TC 44.40 NC 43.80 EFP7GF -7.5111 0.71891 ECMLC 0.67195 -5.58639 3.01162 1600000 387511 0.003097 ECMGC 0.44297 -14.78645 -2.49792 1600000 92491 0.004325 ECMLI 0.61882 -4.00898 4.81690 1600000 282583 0.004247 ECMGI 0.45532 -10.31398 0.87902 1600000 65375 0.006119 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 87 107 -9.163 -9.103 -0.081 -7.879 -8.159 -4.520 IL 1 1 2 1 6 1 27 89 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 27 89 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 74 U A - - MP 3 2 3 7 6 2 29 87 108 -9.103 -9.042 -0.129 -3.735 -8.099 -8.494 -4.172 -3.997 -4.013 -0.293 -2.959 -4.579 1.370 -3.653 -4.018 -0.037 -4.392 -1.897 3.320 -4.325 -0.635 -2.844 ML 4 2 3 7 6 1 25 86 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 24 86 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 21 83 103 -9.832 -8.530 -4.327 -5.009 -5.026 -0.177 IL 7 7 5 7 6 1 27 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 27 87 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 73 C G - - MP 9 8 6 13 6 2 27 85 106 -8.997 -8.936 -0.023 -7.713 -7.993 -8.388 -3.999 -3.847 -3.777 -0.138 -2.630 -4.258 3.335 -3.382 -3.813 0.202 -4.127 -1.789 0.932 -4.101 -0.329 -2.674 ML 10 8 6 13 6 1 25 84 104 -7.204 -7.550 -0.531 -1.959 -7.400 -4.929 -0.477 0.972 -1.218 -0.168 MR 11 8 6 13 6 1 23 84 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 20 82 102 -9.832 -8.530 -4.327 -5.009 -1.154 -1.102 IL 13 13 5 13 6 1 25 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 25 85 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 72 U A - - MP 15 14 6 19 6 2 25 83 104 -9.103 -9.042 -0.021 -7.819 -8.099 -8.494 -4.172 -3.997 -4.013 -0.293 -2.959 -4.579 1.370 -3.653 -4.018 -0.037 -4.392 -1.897 3.320 -4.325 -0.635 -2.844 ML 16 14 6 19 6 1 23 82 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 21 82 102 -7.564 -6.293 -2.202 -6.272 -0.500 -4.485 1.101 -0.977 -0.723 -0.433 D 18 14 6 19 6 0 20 80 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 24 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 24 83 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 71 C G - - MP 21 20 6 25 4 2 23 81 102 -6.936 -7.143 -0.363 -2.269 -4.533 -4.438 -4.226 -0.671 -2.947 -4.640 3.546 -3.756 -4.274 -0.429 -4.537 -2.384 0.569 -4.603 -0.653 -3.115 ML 22 20 6 25 4 1 23 82 102 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 20 81 101 -5.457 -4.486 -2.353 -0.441 -0.110 -1.025 0.888 -0.451 D 24 20 6 25 4 0 19 80 101 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 24 83 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 27 26 6 29 3 1 24 79 99 -7.680 -0.025 -6.334 0.998 -1.189 -0.131 -0.619 D 28 26 6 29 3 0 19 78 98 -7.999 -0.902 -1.118 IL 29 29 3 29 3 1 23 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 30 29 3 32 3 1 23 78 98 -7.953 -0.021 -6.607 -1.557 -2.774 1.718 -2.161 D 31 29 3 32 3 0 17 76 96 -7.143 -2.656 -0.261 IL 32 32 3 32 3 1 22 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 33 32 3 35 3 1 22 77 97 -7.953 -0.021 -6.607 -1.466 -1.466 -2.198 1.613 D 34 32 3 35 3 0 17 75 95 -7.143 -2.656 -0.261 IL 35 35 3 35 3 1 21 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 36 35 3 38 3 1 21 76 96 -7.953 -0.021 -6.607 -1.557 -2.774 1.718 -2.161 D 37 35 3 38 3 0 16 74 94 -7.143 -2.656 -0.261 IL 38 38 3 38 3 1 21 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 39 38 3 41 3 1 21 75 95 -7.953 -0.021 -6.607 1.714 -2.350 -1.984 -1.890 D 40 38 3 41 3 0 16 74 94 -7.143 -0.626 -1.535 IL 41 41 3 41 3 1 20 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - U - - - ML 42 41 3 44 3 1 20 74 94 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 43 41 3 44 3 0 14 72 93 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 45 44 3 47 3 1 19 73 93 -8.097 -0.019 -6.751 -1.861 -3.123 1.780 -2.511 D 46 44 3 47 3 0 14 71 92 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 18 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 48 47 3 50 3 1 18 72 92 -8.097 -0.019 -6.751 1.771 -2.640 -2.245 -2.209 D 49 47 3 50 3 0 13 70 90 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 17 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 51 50 3 53 3 1 18 71 91 -8.097 -0.019 -6.751 1.394 -1.731 -0.637 -1.226 D 52 50 3 53 3 0 12 69 89 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 54 53 3 56 3 1 17 70 90 -8.097 -0.019 -6.751 1.771 -2.640 -2.245 -2.209 D 55 53 3 56 3 0 11 68 88 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 57 56 3 59 3 1 16 69 89 -8.097 -0.019 -6.751 1.771 -2.640 -2.245 -2.209 D 58 56 3 59 3 0 11 67 87 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 15 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - C - - - ML 60 59 3 62 3 1 15 68 88 -8.097 -0.019 -6.751 -1.164 1.249 -1.999 -0.110 D 61 59 3 62 3 0 10 66 86 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 14 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 63 62 3 65 3 1 14 67 86 -8.097 -0.019 -6.751 -0.317 -1.026 -1.481 1.231 D 64 62 3 65 3 0 9 65 85 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - u - - - ML 66 65 3 68 3 1 14 66 85 -8.097 -0.019 -6.751 -0.814 0.406 -1.599 0.829 D 67 65 3 68 3 0 9 64 84 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 69 68 3 71 3 1 13 65 84 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 70 68 3 71 3 0 8 63 83 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 72 71 3 74 3 1 12 64 83 -8.097 -0.019 -6.751 -1.861 -3.123 1.780 -2.511 D 73 71 3 74 3 0 7 62 82 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 75 74 3 77 3 1 11 62 82 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 76 74 3 77 3 0 6 61 81 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 11 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 78 77 3 80 3 1 10 61 81 -8.479 -0.017 -6.796 -2.066 1.701 -2.897 -1.414 D 79 77 3 80 3 0 6 60 80 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 9 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 70 - G - - MR 81 80 3 83 3 1 9 60 80 -8.479 -0.017 -6.796 -0.288 -1.996 1.353 -1.414 D 82 80 3 83 3 0 4 59 78 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 9 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 69 - A - - MR 84 83 3 86 3 1 9 59 79 -8.479 -0.017 -6.796 1.771 -2.640 -2.245 -2.209 D 85 83 3 86 3 0 4 58 77 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 8 60 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 68 - G - - MR 87 86 3 89 3 1 8 58 78 -8.479 -0.017 -6.796 -1.861 -3.123 1.780 -2.511 D 88 86 3 89 3 0 3 57 76 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 7 59 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 67 - U - - MR 90 89 3 92 3 1 7 57 77 -8.479 -0.017 -6.796 -1.734 -1.687 -2.479 1.682 D 91 89 3 92 3 0 2 56 75 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 6 58 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 66 - C - - MR 93 92 3 95 3 1 6 56 76 -3.449 -0.153 -6.796 -2.066 1.701 -2.897 -1.414 D 94 92 3 95 3 0 2 54 74 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 6 57 76 -2.321 -0.401 -4.560 0.000 0.000 0.000 0.000 [ MATR 28 ] - 64 - u - - MR 96 95 3 98 3 1 5 55 75 -8.479 -0.017 -6.796 -0.541 -0.964 -0.302 0.992 D 97 95 3 98 3 0 1 54 73 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 5 56 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 63 - G - - MR 99 98 3 101 3 1 4 54 74 -8.479 -0.017 -6.796 0.212 -1.703 1.052 -1.117 D 100 98 3 101 3 0 1 53 72 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 4 55 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 62 - u - - MR 102 101 3 104 3 1 4 53 73 -8.479 -0.136 -3.515 0.476 -0.901 -1.137 0.695 D 103 101 3 104 3 0 0 52 71 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 4 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 61 - u - - MR 105 104 3 107 3 1 4 52 72 -8.361 -0.019 -6.679 0.025 -0.801 -0.176 0.607 D 106 104 3 107 3 0 0 51 70 -7.166 -0.706 -1.396 IR 107 107 3 107 3 1 3 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 60 - U - - MR 108 107 3 110 3 1 4 51 71 -8.479 -0.017 -6.796 -1.734 -1.687 -2.479 1.682 D 109 107 3 110 3 0 0 49 69 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 2 52 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 59 - g - - MR 111 110 3 113 3 1 3 50 70 -8.479 -0.017 -6.796 -0.448 -1.055 0.512 0.443 D 112 110 3 113 3 0 0 48 68 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 2 51 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 58 - a - - MR 114 113 3 116 3 1 3 49 69 -2.738 -0.250 -6.796 0.643 -0.380 -1.040 0.243 D 115 113 3 116 3 0 0 46 65 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 2 50 70 -1.380 -0.765 -5.197 0.000 0.000 0.000 0.000 [ MATR 35 ] - 55 - A - - MR 117 116 3 119 3 1 2 46 65 -8.479 -0.017 -6.796 1.144 -1.550 -0.075 -1.001 D 118 116 3 119 3 0 0 44 63 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 54 - a - - MR 120 119 3 122 3 1 2 45 64 -8.479 -0.017 -6.796 0.956 -0.610 -0.510 -0.509 D 121 119 3 122 3 0 0 43 62 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 53 - u - - MR 123 122 3 125 3 1 2 44 63 -8.479 -0.017 -6.796 0.009 -0.850 -0.193 0.645 D 124 122 3 125 3 0 0 42 61 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 52 - A - - MR 126 125 3 128 3 1 1 43 62 -8.479 -0.017 -6.796 1.771 -2.640 -2.245 -2.209 D 127 125 3 128 3 0 0 41 60 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 51 - G - - MR 129 128 3 131 3 1 1 42 61 -8.479 -0.017 -6.796 -1.861 -3.123 1.780 -2.511 D 130 128 3 131 3 0 0 40 59 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 50 - u - - MR 132 131 3 134 3 1 1 41 60 -8.479 -0.017 -6.796 0.117 -0.833 -0.560 0.745 D 133 131 3 134 3 0 0 39 58 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 49 - A - - MR 135 134 3 137 3 1 1 40 59 -8.479 -0.017 -6.796 1.771 -2.640 -2.245 -2.209 D 136 134 3 137 3 0 0 38 57 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 48 - G - - MR 138 137 3 140 3 1 1 39 58 -8.479 -0.017 -6.796 -1.861 -3.123 1.780 -2.511 D 139 137 3 140 3 0 0 37 56 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 47 - u - - MR 141 140 3 143 3 1 1 38 57 -8.479 -0.017 -6.796 0.476 -0.901 -1.137 0.695 D 142 140 3 143 3 0 0 36 55 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 46 - G - - MR 144 143 3 146 3 1 1 37 56 -8.479 -0.017 -6.796 -1.861 -3.123 1.780 -2.511 D 145 143 3 146 3 0 0 35 54 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 45 - A - - MR 147 146 3 149 3 1 1 36 55 -8.479 -0.017 -6.796 1.291 -1.339 -1.355 -0.383 D 148 146 3 149 3 0 0 34 53 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 44 - A - - MR 150 149 3 152 3 1 1 35 54 -8.479 -0.017 -6.796 1.144 -1.550 -0.075 -1.001 D 151 149 3 152 3 0 0 33 52 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 43 - a - - MR 153 152 3 155 3 1 1 34 53 -8.479 -0.017 -6.796 0.783 -0.961 -1.119 0.385 D 154 152 3 155 3 0 0 32 51 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 42 - g - - MR 156 155 3 158 3 1 1 33 52 -8.479 -0.017 -6.796 -0.508 -0.390 0.924 -0.651 D 157 155 3 158 3 0 0 31 50 -6.390 -1.568 -0.620 IR 158 158 3 158 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 41 - g - - MR 159 158 3 161 3 1 1 32 51 -8.479 -0.017 -6.796 0.185 -0.948 0.284 0.173 D 160 158 3 161 3 0 0 30 49 -6.390 -1.568 -0.620 IR 161 161 3 161 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 40 - u - - MR 162 161 3 164 3 1 1 31 50 -8.479 -0.377 -2.137 0.053 0.052 -0.194 0.073 D 163 161 3 164 3 0 0 29 48 -6.390 -1.568 -0.620 IR 164 164 3 164 3 1 1 32 51 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 51 ] - 39 - u - - MR 165 164 3 167 3 1 1 30 49 -3.333 -0.169 -6.441 0.498 -0.732 -0.928 0.546 D 166 164 3 167 3 0 0 29 47 -7.967 -0.362 -2.197 IR 167 167 3 167 3 1 1 30 49 -2.266 -0.419 -4.504 0.000 0.000 0.000 0.000 [ MATR 52 ] - 37 - A - - MR 168 167 3 170 5 1 1 29 48 -7.210 -0.036 -7.025 -7.237 -8.129 1.771 -2.640 -2.245 -2.209 D 169 167 3 170 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 170 170 3 170 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 23 36 C G - - MP 171 170 3 175 6 2 2 28 47 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.841 -4.772 -4.481 -0.980 -3.138 -4.854 3.632 -3.977 -4.541 -0.778 -4.769 -2.724 0.345 -4.891 -0.853 -3.372 ML 172 170 3 175 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 3 175 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 3 175 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 24 35 A U - - MP 177 176 6 181 6 2 2 26 45 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -4.035 -3.006 -4.034 3.469 -4.497 -5.585 -0.180 -4.059 -3.918 0.815 -4.477 -0.445 -0.597 -4.730 -2.120 -2.855 ML 178 176 6 181 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 25 34 G C - - MP 183 182 6 187 6 2 2 24 43 -9.163 -9.103 -0.020 -7.879 -8.159 -8.554 -5.004 -3.220 -5.132 0.022 -5.601 -4.794 -0.900 -5.390 -4.495 3.695 -4.814 -0.930 -1.279 -4.639 -2.952 -4.005 ML 184 182 6 187 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 26 33 U A - - MP 189 188 6 193 4 2 2 22 41 -7.090 -7.297 -0.048 -5.711 -3.837 -3.804 -3.734 -0.120 -2.725 -4.320 1.592 -3.424 -3.751 0.097 -4.151 -1.836 3.049 -3.992 0.653 -2.624 ML 190 188 6 193 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 192 188 6 193 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 193 193 5 193 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 194 194 6 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 27 - U - - - ML 195 194 6 197 3 1 1 19 37 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 196 194 6 197 3 0 0 18 37 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 28 - C - - - ML 198 197 3 200 3 1 1 17 36 -8.097 -0.019 -6.751 -2.066 1.701 -2.897 -1.414 D 199 197 3 200 3 0 0 17 36 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 29 - U - - - ML 201 200 3 203 3 1 1 16 35 -8.097 -0.019 -6.751 -1.734 -1.687 -2.479 1.682 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 30 - G - - - ML 204 203 3 206 3 1 1 15 33 -8.097 -0.019 -6.751 -1.861 -3.123 1.780 -2.511 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 31 - C - - - ML 207 206 3 209 3 1 1 13 31 -8.097 -0.019 -6.751 -2.066 1.701 -2.897 -1.414 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 32 - U - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 -1.734 -1.687 -2.479 1.682 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SNORD38 ACC RF00212 DESC Small nucleolar RNA SNORD38 LENG 70 MAXL 154 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:24:48 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 7 EFFN 2.689941 CKSUM 2321779813 STATS LOCAL MSV -8.8591 0.71891 STATS LOCAL VITERBI -9.2505 0.71891 STATS LOCAL FORWARD -3.5616 0.71891 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26963 1.69865 1.33578 1.29762 1.38629 1.38629 1.38629 1.38629 0.14969 4.00579 2.11349 1.46634 0.26236 0.00000 * 1 2.93940 1.85949 2.66525 0.32605 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04143 3.89753 3.89753 1.46634 0.26236 2.15578 0.12309 2 2.64921 0.39845 2.45316 1.76077 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.04143 3.89753 3.89753 1.46634 0.26236 2.15578 0.12309 3 2.83016 1.85432 2.61776 0.34042 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04143 3.89753 3.89753 1.46634 0.26236 2.15578 0.12309 4 3.08276 0.26121 2.88102 2.05594 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.26133 3.89753 1.56218 1.46634 0.26236 2.15578 0.12309 5 0.66717 2.26515 1.47255 1.87283 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.05136 3.68756 3.68756 1.46634 0.26236 0.55323 0.85588 6 2.64384 3.51381 0.15830 3.08932 6 G - - - 1.38629 1.38629 1.38629 1.38629 0.04143 3.89753 3.89753 1.46634 0.26236 2.15578 0.12309 7 2.55885 2.53156 3.07412 0.22710 7 U - - - 1.38629 1.38629 1.38629 1.38629 0.04143 3.89753 3.89753 1.46634 0.26236 2.15578 0.12309 8 2.64384 3.51381 0.15830 3.08932 8 G - - - 1.38629 1.38629 1.38629 1.38629 0.04143 3.89753 3.89753 1.46634 0.26236 2.15578 0.12309 9 0.16443 3.18463 2.91409 2.88288 9 A - - - 1.38629 1.38629 1.38629 1.38629 0.04143 3.89753 3.89753 1.46634 0.26236 0.26348 1.46263 10 2.76262 2.70086 3.28573 0.18355 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 11 2.86464 3.76398 0.12294 3.33852 11 G - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 12 0.13017 3.40091 3.10940 3.12159 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 13 0.38774 2.68817 1.84505 2.34982 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 14 0.13017 3.40091 3.10940 3.12159 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 15 0.13017 3.40091 3.10940 3.12159 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 16 2.31078 0.47327 2.90114 1.50105 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 17 1.64243 2.17155 2.49794 0.49391 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 18 2.03015 1.07594 2.58254 0.79380 18 u - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 19 2.76262 2.70086 3.28573 0.18355 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 20 2.86464 3.76398 0.12294 3.33852 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 21 2.76262 2.70086 3.28573 0.18355 21 U - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 22 3.04217 0.16590 3.61766 2.54730 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 23 3.32063 0.20719 3.13577 2.22990 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 24 0.28261 2.96553 1.97445 2.88565 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 25 2.68333 3.39475 0.14814 3.32973 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 26 2.72764 1.65010 2.50063 0.41466 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 27 2.76262 2.70086 3.28573 0.18355 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 28 3.04217 0.16590 3.61766 2.54730 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 29 2.76262 2.70086 3.28573 0.18355 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 30 2.86464 3.76398 0.12294 3.33852 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 31 3.04217 0.16590 3.61766 2.54730 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 32 2.76262 2.70086 3.28573 0.18355 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 33 0.57067 2.66747 1.26141 2.49892 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 34 3.53086 0.17507 3.23866 2.38480 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 35 3.11939 2.28889 2.78268 0.23248 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 36 2.51725 3.32514 0.17508 3.12442 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 37 0.13017 3.40091 3.10940 3.12159 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.47027 2.25768 1.30720 0.31792 1.30070 1.09861 0.40547 38 1.03204 1.92350 2.06501 0.99207 39 u - - - 1.38629 1.38629 1.38629 1.38629 0.04994 3.71495 3.71495 1.46634 0.26236 0.12628 2.13172 39 1.36180 1.33191 1.51093 1.35045 40 c - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 40 1.26423 2.08287 1.16539 1.26880 41 g - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 41 1.81452 1.65912 0.69164 1.92398 42 G - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 42 0.82194 2.10123 2.21278 1.11254 43 a - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 43 0.56347 2.55315 1.42812 2.17882 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 44 0.45844 2.38560 2.40438 1.68537 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 45 2.86464 3.76398 0.12294 3.33852 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 46 1.04503 2.05992 2.22448 0.88496 47 u - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 47 2.86464 3.76398 0.12294 3.33852 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 48 0.13017 3.40091 3.10940 3.12159 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 49 1.30833 2.00386 1.78172 0.85199 50 u - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 50 2.86464 3.76398 0.12294 3.33852 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 51 0.13017 3.40091 3.10940 3.12159 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 52 1.39053 2.01421 1.51087 0.92404 53 u - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 53 0.69745 1.81803 1.75388 1.79155 54 a - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 54 0.56347 2.55315 1.42812 2.17882 55 A - - - 1.38629 1.38629 1.38629 1.38629 0.23114 1.67044 4.00579 0.76125 0.62939 1.09861 0.40547 55 0.92232 1.65367 2.14807 1.22299 58 a - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 56 1.75009 2.17471 0.99581 1.06951 59 g - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 57 2.76262 2.70086 3.28573 0.18355 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.13593 4.00579 2.21743 1.46634 0.26236 1.09861 0.40547 58 1.37895 1.97584 1.49921 0.95139 61 u - - - 1.38629 1.38629 1.38629 1.38629 0.04088 3.91073 3.91073 1.46634 0.26236 0.28853 1.38374 59 1.04503 2.05992 2.22448 0.88496 62 u - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 60 1.24669 2.66486 0.61788 2.26482 63 G - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 61 1.82270 2.11489 1.59541 0.66371 64 U - - - 1.38629 1.38629 1.38629 1.38629 0.14969 2.11349 4.00579 0.27823 1.41520 1.09861 0.40547 62 3.04217 0.16590 3.61766 2.54730 66 C - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 63 2.76262 2.70086 3.28573 0.18355 67 U - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 64 2.86464 3.76398 0.12294 3.33852 68 G - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 65 0.13017 3.40091 3.10940 3.12159 69 A - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 66 1.62677 2.88637 0.40826 2.49071 70 G - - - 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 67 2.32977 3.06460 0.22355 2.87643 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.03710 4.00579 4.00579 1.46634 0.26236 1.09861 0.40547 68 0.37520 2.82389 1.70395 2.63789 72 A - - > 1.38629 1.38629 1.38629 1.38629 0.36959 4.00579 1.23522 1.46634 0.26236 1.09861 0.40547 69 2.05324 2.61998 0.33247 2.50435 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.05136 3.68756 3.68756 1.46634 0.26236 0.55323 0.85588 70 0.37098 2.85034 1.69628 2.67720 74 A - - > 1.38629 1.38629 1.38629 1.38629 0.02093 3.87703 * 1.46634 0.26236 0.00000 * //