INFERNAL1/a [1.1.4 | Dec 2020] NAME Retro_dr1 ACC RF00214 DESC Retrovirus direct repeat 1 (dr1) STATES 279 NODES 74 CLEN 90 W 108 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:24:53 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 1.209229 CKSUM 1587642697 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 43.70 NC 35.40 EFP7GF -6.6396 0.71874 ECMLC 0.61883 -8.23327 1.46840 1600000 485882 0.002470 ECMGC 0.45689 -15.09665 -4.48547 1600000 51002 0.007843 ECMLI 0.61354 -5.59833 3.41990 1600000 303488 0.003954 ECMGI 0.48490 -9.83686 -0.17147 1600000 43401 0.009216 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 108 128 -6.564 -7.810 -0.100 -4.263 IL 1 1 2 1 4 4 36 109 130 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 5 36 109 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 95 - G - - MR 3 2 3 5 3 4 35 108 128 -8.073 -0.023 -6.391 -0.938 -2.043 1.518 -1.428 D 4 2 3 5 3 2 33 106 127 -6.390 -1.568 -0.620 IR 5 5 3 5 3 4 35 108 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 94 - G - - MR 6 5 3 8 3 3 34 107 127 -8.073 -0.023 -6.391 -0.938 -2.043 1.518 -1.428 D 7 5 3 8 3 1 33 105 126 -6.390 -1.568 -0.620 IR 8 8 3 8 3 3 34 107 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 93 - A - - MR 9 8 3 11 2 2 33 106 126 -3.646 -0.120 1.550 -1.773 -1.464 -1.262 D 10 8 3 11 2 1 32 105 125 -4.432 -0.068 IR 11 11 3 11 2 2 33 106 127 -2.083 -0.388 0.000 0.000 0.000 0.000 [ BIF 4 ] - - - - - - B 12 11 3 13 51 1 32 104 125 [ BEGL 5 ] - - - - - - S 13 12 1 14 4 0 0 26 45 -0.050 -6.676 -6.084 -6.724 [ MATP 6 ] 1 12 u a - - MP 14 13 1 18 6 2 2 26 45 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.497 -3.379 -3.412 0.265 -2.496 -4.019 1.806 -3.161 -3.440 0.615 -3.846 -1.379 2.858 -3.650 0.093 -2.321 ML 15 13 1 18 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 16 13 1 18 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 17 13 1 18 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 18 18 5 18 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 19 19 6 19 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 2 11 G C - - MP 20 19 6 24 6 2 2 24 43 -8.990 -8.930 -0.034 -6.323 -7.986 -8.381 -3.773 -1.729 -3.825 0.811 -4.191 -4.244 0.220 -4.146 -3.709 3.334 -4.107 -0.333 -0.090 -3.726 -1.739 -2.773 ML 21 19 6 24 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 6 24 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 6 24 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 3 10 u g - - MP 26 25 6 30 4 2 2 22 41 -6.584 -6.791 -0.069 -5.205 -3.326 -3.255 -3.213 0.329 -2.254 -3.776 2.004 -2.943 -3.253 0.642 -3.635 -1.324 1.555 -3.473 2.205 -2.167 ML 27 25 6 30 4 1 1 23 42 -3.856 -4.038 -0.467 -2.768 0.202 -0.364 -0.378 0.383 MR 28 25 6 30 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 29 25 6 30 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 30 30 5 30 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 31 31 6 31 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 4 - A - - - ML 32 31 6 34 3 1 1 19 38 -7.661 -0.025 -6.315 1.214 -1.122 -0.761 -0.665 D 33 31 6 34 3 0 0 18 37 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 5 - A - - - ML 35 34 3 37 3 1 1 18 36 -7.661 -0.025 -6.315 1.550 -1.773 -1.464 -1.262 D 36 34 3 37 3 0 0 17 36 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 6 - C - - - ML 38 37 3 40 3 1 1 16 35 -7.661 -0.025 -6.315 -1.040 1.363 -1.828 -0.600 D 39 37 3 40 3 0 0 16 34 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 7 - G - - - ML 41 40 3 43 3 1 1 15 33 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 42 40 3 43 3 0 0 15 33 -6.174 -1.687 -0.566 IL 43 43 3 43 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 8 - G - - - ML 44 43 3 46 3 1 1 13 32 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 45 43 3 46 3 0 0 13 32 -6.174 -1.687 -0.566 IL 46 46 3 46 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 9 - G - - - ML 47 46 3 49 2 1 1 1 1 * 0.000 -0.545 -1.363 1.257 -0.901 D 48 46 3 49 2 0 0 0 0 * 0.000 IL 49 49 3 49 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 15 ] - - - - - - E 50 49 3 -1 0 0 0 0 0 [ BEGR 16 ] - - - - - - S 51 12 1 52 3 0 21 92 112 -7.661 -0.025 -6.315 IL 52 52 2 52 3 1 21 95 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - a - - - ML 53 52 2 55 3 1 21 92 112 -7.661 -0.025 -6.315 0.757 -0.783 -0.682 0.145 D 54 52 2 55 3 0 16 90 111 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 21 94 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - G - - - ML 56 55 3 58 3 1 21 91 111 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 57 55 3 58 3 0 15 89 110 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 20 93 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 15 - G - - - ML 59 58 3 61 3 1 20 90 110 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 60 58 3 61 3 0 14 88 109 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 19 92 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 16 - C - - - ML 62 61 3 64 3 1 19 89 109 -7.661 -0.025 -6.315 -1.040 1.363 -1.828 -0.600 D 63 61 3 64 3 0 13 87 108 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 18 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - U - - - ML 65 64 3 67 3 1 18 88 108 -7.661 -0.025 -6.315 -0.950 -1.046 -1.648 1.422 D 66 64 3 67 3 0 12 86 106 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 17 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - - - ML 68 67 3 70 3 1 18 87 107 -7.661 -0.025 -6.315 -0.950 -1.046 -1.648 1.422 D 69 67 3 70 3 0 11 85 105 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 17 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - g - - - ML 71 70 3 73 3 1 17 86 106 -7.661 -0.025 -6.315 0.238 -1.281 0.834 -0.675 D 72 70 3 73 3 0 10 84 104 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 16 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - A - - - ML 74 73 3 76 3 1 17 85 105 -7.661 -0.025 -6.315 1.243 -1.133 -0.843 -0.690 D 75 73 3 76 3 0 9 83 103 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 15 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - C - - - ML 77 76 3 79 3 1 16 84 104 -7.661 -0.025 -6.315 -1.040 1.363 -1.828 -0.600 D 78 76 3 79 3 0 8 82 102 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 14 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - U - - - ML 80 79 3 82 5 1 16 82 102 -6.832 -0.047 -6.647 -6.860 -7.751 -0.568 -0.267 -1.290 1.060 D 81 79 3 82 5 0 8 81 101 -4.959 -0.803 -4.221 -2.596 -2.508 IL 82 82 3 82 5 1 12 83 103 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 91 g c - - MP 83 82 3 87 6 2 17 81 101 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.156 -1.206 -3.202 1.420 -3.536 -3.916 0.691 -3.552 -3.265 2.900 -3.703 0.115 0.412 -3.235 -1.198 -2.197 ML 84 82 3 87 6 1 9 80 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 3 87 6 1 9 80 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 3 87 6 0 4 77 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 11 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 12 81 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 90 a u - - MP 89 88 6 93 6 2 16 79 99 -8.990 -6.680 -0.034 -7.706 -7.986 -8.381 -3.067 -1.450 -3.145 2.757 -3.390 -4.198 0.735 -3.345 -3.131 1.774 -3.656 -0.025 0.436 -3.423 -1.139 -2.096 ML 90 88 6 93 6 1 9 78 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 9 78 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 4 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 11 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 11 79 99 -2.468 -0.472 -5.979 -4.147 -5.253 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 88 G C - - MP 95 94 6 99 6 2 16 77 97 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -4.156 -2.819 -4.219 0.575 -4.408 -4.450 0.089 -4.406 -3.919 3.458 -4.302 -0.505 -0.316 -4.077 -1.921 -3.105 ML 96 94 6 99 6 1 8 76 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 8 76 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 3 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 10 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 11 77 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 87 G C - - MP 101 100 6 105 6 2 15 75 95 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -4.156 -2.819 -4.219 0.575 -4.408 -4.450 0.089 -4.406 -3.919 3.458 -4.302 -0.505 -0.316 -4.077 -1.921 -3.105 ML 102 100 6 105 6 1 8 74 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 8 74 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 3 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 10 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 10 75 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 27 86 G C - - MP 107 106 6 111 6 2 14 73 93 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -4.156 -2.819 -4.219 0.575 -4.408 -4.450 0.089 -4.406 -3.919 3.458 -4.302 -0.505 -0.316 -4.077 -1.921 -3.105 ML 108 106 6 111 6 1 8 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 7 72 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 3 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 9 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 10 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 28 85 G C - - MP 113 112 6 117 6 2 13 71 91 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -4.156 -2.819 -4.219 0.575 -4.408 -4.450 0.089 -4.406 -3.919 3.458 -4.302 -0.505 -0.316 -4.077 -1.921 -3.105 ML 114 112 6 117 6 1 7 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 6 1 6 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 116 112 6 117 6 0 2 67 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 117 117 5 117 6 1 9 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 118 118 6 118 5 1 9 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 29 84 a u - - MP 119 118 6 123 6 2 11 69 89 -8.990 -8.930 -0.031 -6.557 -7.986 -8.381 -3.347 -2.502 -3.391 2.931 -3.512 -4.546 0.764 -3.456 -3.307 1.567 -3.832 -0.061 0.342 -3.806 -1.181 -2.257 ML 120 118 6 123 6 1 7 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 6 123 6 1 5 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 6 123 6 0 2 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 8 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 8 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 30 83 c g - - MP 125 124 6 129 6 2 9 67 87 -8.982 -5.947 -0.044 -7.698 -7.977 -8.372 -3.130 -3.166 -3.108 0.331 0.453 -3.749 2.839 -2.952 -3.146 0.511 -3.578 -1.358 1.254 -3.335 -0.081 -2.113 ML 126 124 6 129 6 1 6 67 87 -6.350 -3.710 -1.410 -1.105 -6.546 -4.075 0.241 -0.062 -0.410 0.147 MR 127 124 6 129 6 1 4 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 2 64 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 7 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 7 67 87 -2.558 -0.439 -6.069 -4.237 -5.343 0.000 0.000 0.000 0.000 [ MATP 35 ] 31 81 u a - - MP 131 130 6 135 4 2 8 65 85 -6.618 -6.825 -0.067 -5.239 -1.238 -2.176 -2.223 1.004 -0.935 -3.052 1.743 -2.425 -2.269 1.079 -2.820 -0.593 2.090 -2.369 0.001 -1.377 ML 132 130 6 135 4 1 5 66 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 4 1 3 65 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 134 130 6 135 4 0 1 64 84 -4.568 -4.250 -2.265 -0.520 IL 135 135 5 135 4 1 6 67 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 136 136 6 136 3 1 6 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - A - - - ML 137 136 6 139 3 1 6 63 83 -7.661 -0.025 -6.315 1.107 -1.225 -0.343 -0.667 D 138 136 6 139 3 0 1 62 81 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 5 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - U - - - ML 140 139 3 142 3 1 6 62 82 -7.661 -0.025 -6.315 -0.616 -0.409 -1.334 1.136 D 141 139 3 142 3 0 0 60 80 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 5 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - a - - - ML 143 142 3 145 3 1 5 61 81 -7.661 -0.025 -6.315 0.965 -1.166 -0.091 -0.593 D 144 142 3 145 3 0 0 59 79 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 4 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - g - - - ML 146 145 3 148 3 1 5 60 80 -7.661 -0.025 -6.315 0.141 -0.898 0.698 -0.437 D 147 145 3 148 3 0 0 58 78 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 3 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - c - - - ML 149 148 3 151 3 1 4 59 78 -7.661 -0.025 -6.315 -0.570 0.805 -1.339 0.243 D 150 148 3 151 3 0 0 57 77 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 3 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - A - - - ML 152 151 3 154 3 1 4 58 77 -7.661 -0.025 -6.315 1.550 -1.773 -1.464 -1.262 D 153 151 3 154 3 0 0 56 76 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 2 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - U - - - ML 155 154 3 157 3 1 3 57 76 -7.661 -0.025 -6.315 -0.950 -1.046 -1.648 1.422 D 156 154 3 157 3 0 0 55 75 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 2 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - G - - - ML 158 157 3 160 3 1 3 56 75 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 159 157 3 160 3 0 0 54 74 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 2 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 40 - U - - - ML 161 160 3 163 3 1 2 55 74 -7.661 -0.025 -6.315 -0.950 -1.046 -1.648 1.422 D 162 160 3 163 3 0 0 53 73 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 41 - A - - - ML 164 163 3 166 3 1 2 53 73 -8.073 -0.023 -6.391 1.217 -1.154 -1.082 -0.409 D 165 163 3 166 3 0 0 52 72 -5.620 -0.734 -1.403 IL 166 166 3 166 3 1 1 54 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 80 - G - - MR 167 166 3 169 3 1 1 52 72 -8.073 -0.023 -6.391 -0.938 -2.043 1.518 -1.428 D 168 166 3 169 3 0 0 51 70 -6.390 -1.568 -0.620 IR 169 169 3 169 3 1 1 53 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 79 - G - - MR 170 169 3 172 5 1 1 51 71 -6.832 -0.047 -6.647 -6.860 -7.751 -0.938 -2.043 1.518 -1.428 D 171 169 3 172 5 0 0 50 70 -5.352 -0.707 -2.978 -4.409 -2.404 IR 172 172 3 172 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 42 78 u a - - MP 173 172 3 177 6 2 2 50 70 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.626 -3.420 -3.522 0.238 -2.596 -4.134 1.716 -3.247 -3.534 0.602 -3.933 -1.333 2.964 -3.794 -0.286 -2.407 ML 174 172 3 177 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 3 177 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 3 177 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 43 77 a u - - MP 179 178 6 183 6 2 2 48 68 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.347 -2.502 -3.391 2.931 -3.512 -4.546 0.764 -3.456 -3.307 1.567 -3.832 -0.061 0.342 -3.806 -1.181 -2.257 ML 180 178 6 183 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 182 178 6 183 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 183 183 5 183 6 1 1 48 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 184 184 6 184 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 44 76 g c - - MP 185 184 6 189 6 2 2 46 66 -8.990 -6.822 -0.033 -7.706 -7.986 -8.381 -2.103 -1.612 -2.355 1.221 -2.374 -2.972 1.284 -2.569 -0.072 1.652 -2.336 1.235 1.020 -2.429 -0.392 -1.436 ML 186 184 6 189 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 187 184 6 189 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 188 184 6 189 6 0 0 42 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 189 189 5 189 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 190 190 6 190 5 1 1 46 65 -2.461 -0.475 -5.972 -4.140 -5.246 0.000 0.000 0.000 0.000 [ MATP 51 ] 45 74 g c - - MP 191 190 6 195 6 2 2 44 64 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -1.960 -1.755 -2.171 1.157 -2.115 -2.895 1.437 -2.416 -0.986 1.582 0.626 -0.074 1.177 -2.283 -0.194 -1.322 ML 192 190 6 195 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 193 190 6 195 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 194 190 6 195 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 195 195 5 195 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 196 196 6 196 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 46 73 C G - - MP 197 196 6 201 6 2 2 42 62 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.965 -3.808 -3.748 -0.104 -2.610 -4.233 3.317 -3.359 -3.783 0.245 -4.101 -1.750 0.954 -4.069 -0.309 -2.645 ML 198 196 6 201 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 199 196 6 201 6 1 1 41 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 200 196 6 201 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 201 201 5 201 6 1 1 42 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 202 202 6 202 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 47 72 G C - - MP 203 202 6 207 4 2 2 40 60 -6.618 -6.825 -0.067 -5.239 -3.623 -2.611 -3.671 0.813 -3.843 -4.126 0.494 -3.950 -3.601 3.264 -2.750 -0.376 0.146 -3.597 -1.456 -2.643 ML 204 202 6 207 4 1 1 41 60 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 205 202 6 207 4 1 1 40 60 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 206 202 6 207 4 0 0 39 59 -4.568 -4.250 -2.265 -0.520 IL 207 207 5 207 4 1 1 42 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 208 208 6 208 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 48 - a - - - ML 209 208 6 211 3 1 1 38 57 -7.661 -0.025 -6.315 0.493 0.069 -0.890 0.006 D 210 208 6 211 3 0 0 37 56 -6.174 -1.687 -0.566 IL 211 211 3 211 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 49 - a - - - ML 212 211 3 214 3 1 1 37 56 -7.661 -0.025 -6.315 0.873 -0.739 -0.896 0.046 D 213 211 3 214 3 0 0 35 55 -6.174 -1.687 -0.566 IL 214 214 3 214 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 50 - A - - - ML 215 214 3 217 3 1 1 36 55 -7.661 -0.025 -6.315 1.074 -1.208 -0.282 -0.646 D 216 214 3 217 3 0 0 34 54 -6.174 -1.687 -0.566 IL 217 217 3 217 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 51 - a - - - ML 218 217 3 220 3 1 1 35 54 -8.073 -0.023 -6.391 0.800 -0.961 -0.121 -0.276 D 219 217 3 220 3 0 0 33 52 -5.620 -0.734 -1.403 IL 220 220 3 220 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 58 ] - 71 - G - - MR 221 220 3 223 3 1 1 34 53 -8.073 -0.023 -6.391 -0.938 -2.043 1.518 -1.428 D 222 220 3 223 3 0 0 32 51 -6.390 -1.568 -0.620 IR 223 223 3 223 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 59 ] - 70 - C - - MR 224 223 3 226 3 1 1 33 52 -4.659 -0.076 -6.391 -1.040 1.363 -1.828 -0.600 D 225 223 3 226 3 0 0 31 50 -6.390 -1.568 -0.620 IR 226 226 3 226 3 1 1 33 52 -2.058 -0.496 -4.296 0.000 0.000 0.000 0.000 [ MATR 60 ] - 68 - A - - MR 227 226 3 229 5 1 1 31 50 -6.832 -0.047 -6.647 -6.860 -7.751 1.550 -1.773 -1.464 -1.262 D 228 226 3 229 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 229 229 3 229 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 61 ] 52 67 g u - - MP 230 229 3 234 6 2 2 30 49 -8.990 -8.930 -0.023 -7.706 -7.986 -8.381 -3.257 -2.191 -3.389 1.325 -3.808 -4.562 0.509 -3.468 -3.164 1.836 -3.670 2.565 0.147 -3.827 -1.428 -2.178 ML 231 229 3 234 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 232 229 3 234 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 233 229 3 234 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 234 234 5 234 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 235 235 6 235 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 62 ] 53 66 C G - - MP 236 235 6 240 6 2 2 28 47 -8.990 -8.930 -0.033 -6.433 -7.986 -8.381 -3.750 -3.715 -3.637 -0.067 -1.588 -4.200 3.293 -3.359 -3.676 0.183 -4.046 -1.776 0.966 -3.902 -0.369 -2.578 ML 237 235 6 240 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 238 235 6 240 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 239 235 6 240 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 240 240 5 240 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 241 241 6 241 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 63 ] 54 65 g u - - MP 242 241 6 246 6 2 2 26 45 -8.980 -8.920 -0.023 -7.696 -7.976 -8.371 -3.229 -2.179 -3.358 1.337 -3.753 -4.511 0.558 -3.441 -3.143 1.873 -3.648 2.506 0.196 -3.780 -1.378 -2.154 ML 243 241 6 246 6 1 1 26 45 -6.365 -6.711 -1.426 -0.897 -6.561 -4.091 0.323 -0.567 0.189 -0.098 MR 244 241 6 246 6 1 1 25 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 245 241 6 246 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 246 246 5 246 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 247 247 6 247 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 64 ] 55 64 g u - - MP 248 247 6 252 4 2 2 24 43 -6.588 -6.795 -0.069 -5.209 -3.189 -2.156 -3.321 1.460 -3.751 -4.477 0.550 -3.428 -3.120 1.889 -3.628 2.430 0.217 -3.725 -1.381 -2.128 ML 249 247 6 252 4 1 1 25 44 -3.845 -4.027 -0.472 -2.757 0.323 -0.567 0.189 -0.098 MR 250 247 6 252 4 1 1 24 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 251 247 6 252 4 0 0 23 43 -4.568 -4.250 -2.265 -0.520 IL 252 252 5 252 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 253 253 6 253 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 56 - G - - - ML 254 253 6 256 3 1 1 21 40 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 255 253 6 256 3 0 0 20 39 -6.174 -1.687 -0.566 IL 256 256 3 256 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 57 - G - - - ML 257 256 3 259 3 1 1 20 39 -7.661 -0.025 -6.315 -0.938 -2.043 1.518 -1.428 D 258 256 3 259 3 0 0 19 38 -6.174 -1.687 -0.566 IL 259 259 3 259 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 58 - c - - - ML 260 259 3 262 3 1 1 19 38 -7.661 -0.025 -6.315 -0.518 0.656 -1.280 0.394 D 261 259 3 262 3 0 0 18 37 -6.174 -1.687 -0.566 IL 262 262 3 262 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 68 ] 59 - U - - - ML 263 262 3 265 3 1 1 18 36 -7.661 -0.025 -6.315 -0.669 -0.542 -1.384 1.202 D 264 262 3 265 3 0 0 17 36 -6.174 -1.687 -0.566 IL 265 265 3 265 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 69 ] 60 - U - - - ML 266 265 3 268 3 1 1 16 35 -7.661 -0.025 -6.315 -0.305 -0.698 -0.817 1.005 D 267 265 3 268 3 0 0 16 34 -6.174 -1.687 -0.566 IL 268 268 3 268 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 70 ] 61 - C - - - ML 269 268 3 271 3 1 1 15 33 -7.661 -0.025 -6.315 -1.040 1.363 -1.828 -0.600 D 270 268 3 271 3 0 0 15 33 -6.174 -1.687 -0.566 IL 271 271 3 271 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 71 ] 62 - G - - - ML 272 271 3 274 3 1 1 13 32 -7.661 -0.053 -4.995 -0.938 -2.043 1.518 -1.428 D 273 271 3 274 3 0 0 13 32 -6.174 -1.687 -0.566 IL 274 274 3 274 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 72 ] 63 - G - - - ML 275 274 3 277 2 1 1 1 1 * 0.000 -0.882 -1.976 1.493 -1.361 D 276 274 3 277 2 0 0 0 0 * 0.000 IL 277 277 3 277 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 73 ] - - - - - - E 278 277 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Retro_dr1 ACC RF00214 DESC Retrovirus direct repeat 1 (dr1) LENG 90 MAXL 185 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:24:53 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 26 EFFN 1.786865 CKSUM 1587642697 STATS LOCAL MSV -8.5792 0.71874 STATS LOCAL VITERBI -10.0035 0.71874 STATS LOCAL FORWARD -3.3296 0.71874 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.50116 1.51751 1.10884 1.47872 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 0.00000 * 1 2.60189 1.58450 2.32350 0.47339 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 2 2.08624 2.75895 0.29902 2.64587 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 3 2.51597 1.39296 2.27599 0.56531 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 4 0.46631 2.28098 1.99521 2.00607 4 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 5 0.21220 2.95303 2.70566 2.62844 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 6 2.50072 0.28682 3.06852 2.11328 6 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 7 2.39999 3.23264 0.21140 2.80712 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 8 2.39999 3.23264 0.21140 2.80712 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 9 1.98566 2.52973 0.38552 2.27368 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.07576 3.76219 3.00118 1.46634 0.26236 1.09861 0.40547 10 1.61197 2.43991 0.48979 2.29676 10 G - - > 1.38629 1.38629 1.38629 1.38629 0.04891 3.73533 3.73533 1.46634 0.26236 0.65979 0.72765 11 2.86190 0.33302 2.57474 1.89770 11 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 12 0.57126 2.48092 1.35971 2.35615 12 A - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 13 0.81599 1.99903 1.91334 1.29190 13 a - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 14 2.39999 3.23264 0.21140 2.80712 14 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 15 2.39999 3.23264 0.21140 2.80712 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 16 2.50072 0.28682 3.06852 2.11328 16 C - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 17 2.34580 2.35574 2.85058 0.28556 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 18 2.34580 2.35574 2.85058 0.28556 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 19 1.24408 2.44269 0.70648 2.02883 19 g - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 20 0.44390 2.29149 2.07022 2.03106 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 21 2.50072 0.28682 3.06852 2.11328 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 22 1.93918 1.59863 2.45216 0.56582 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 23 1.53793 2.29500 0.56463 2.15552 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 24 0.57211 2.39123 1.43003 2.25525 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 25 2.40378 2.94080 0.22188 2.88615 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 26 2.40363 2.94064 0.22192 2.88593 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 27 2.40336 2.94037 0.22200 2.88554 27 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 28 2.40308 2.94008 0.22208 2.88512 28 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 29 0.48021 2.44230 1.59735 2.38642 29 A - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 30 2.42563 0.52031 2.24417 1.55483 30 C - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 31 1.69719 1.35160 1.68100 0.98943 31 u - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 32 0.54304 2.39058 1.63934 2.01490 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 33 1.98772 1.72725 2.49724 0.50599 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 34 0.65091 2.33673 1.43117 1.94660 34 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 35 1.33232 2.08815 0.80073 1.81265 35 g - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 36 1.95087 0.71139 2.50683 1.25399 36 c - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 37 0.21220 2.95303 2.70566 2.62844 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 38 2.34580 2.35574 2.85058 0.28556 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 39 2.39999 3.23264 0.21140 2.80712 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 40 2.34580 2.35574 2.85058 0.28556 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 41 0.45948 2.32787 2.29154 1.77330 41 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 42 2.66796 1.68725 2.38306 0.42570 42 U - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 43 0.48009 2.44263 1.59738 2.38694 43 A - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 44 1.68066 1.80912 0.76678 1.68499 44 g - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 45 1.72867 1.69207 0.85012 1.55601 45 g - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 46 2.91171 0.32178 2.64883 1.89694 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 47 2.16969 2.58218 0.31803 2.49382 47 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 48 1.01428 1.28835 2.09390 1.43378 48 a - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 49 0.72347 1.95764 2.10216 1.38011 49 a - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 50 0.56781 2.37493 1.58826 1.99559 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 51 0.78687 2.14066 1.45431 1.64201 51 a - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 52 1.79840 2.60258 0.38908 2.49284 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 53 2.86213 0.32028 2.64234 1.92610 53 C - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 54 1.77592 2.55007 0.40733 2.43990 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 55 1.66323 2.56737 0.43692 2.43370 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 56 2.39999 3.23264 0.21140 2.80712 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 57 2.39999 3.23264 0.21140 2.80712 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 58 1.89438 0.82809 2.44405 1.12118 58 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 59 2.04064 1.84850 2.54774 0.45520 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 60 1.71223 1.98333 2.04998 0.59205 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 61 2.50072 0.28682 3.06852 2.11328 61 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 62 2.39999 3.23264 0.21140 2.80712 62 G - - _ 1.38629 1.38629 1.38629 1.38629 0.07237 3.76219 3.06662 1.46634 0.26236 1.09861 0.40547 63 2.34935 3.17357 0.22484 2.74774 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04875 3.73857 3.73857 1.46634 0.26236 1.38750 0.28728 64 2.65464 1.60580 2.37413 0.45279 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.04875 3.73857 3.73857 1.46634 0.26236 1.38750 0.28728 65 2.67170 1.63220 2.36318 0.44434 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.04875 3.73857 3.73857 1.46634 0.26236 0.69194 0.69436 66 2.07811 2.80850 0.29640 2.64442 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 67 2.71946 1.67050 2.41176 0.42117 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 68 0.21220 2.95303 2.70566 2.62844 68 A - - - 1.38629 1.38629 1.38629 1.38629 0.09966 2.63637 3.76219 0.55705 0.85073 1.09861 0.40547 69 2.50072 0.28682 3.06852 2.11328 70 C - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 70 2.39999 3.23264 0.21140 2.80712 71 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 71 2.72261 0.37625 2.32766 1.89486 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 72 2.17112 2.81526 0.27878 2.66857 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 73 1.62523 1.52488 1.01472 1.50066 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.07237 3.06662 3.76219 0.80925 0.58913 1.09861 0.40547 74 1.52009 1.53391 1.59810 1.01242 76 u - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 75 2.62173 1.85966 2.25898 0.40475 77 U - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 76 0.48297 2.56519 1.52401 2.42690 78 A - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 77 2.39999 3.23264 0.21140 2.80712 79 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 78 2.39999 3.23264 0.21140 2.80712 80 G - - - 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 79 1.02429 1.84812 1.25812 1.61332 81 a - - > 1.38629 1.38629 1.38629 1.38629 0.09966 2.63637 3.76219 0.55705 0.85073 1.09861 0.40547 80 1.30662 2.40825 0.63339 2.22099 83 G - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 81 2.61565 1.85925 2.25704 0.40582 84 U - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 82 3.09754 0.26057 2.76997 2.10730 85 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 83 3.09732 0.26060 2.76988 2.10726 86 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 84 3.09623 0.26073 2.76944 2.10704 87 C - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 85 3.09342 0.26108 2.76830 2.10650 88 C - - > 1.38629 1.38629 1.38629 1.38629 0.07576 3.00118 3.76219 0.76507 0.62606 1.09861 0.40547 86 2.47579 1.57599 2.19801 0.51404 90 U - - > 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 87 2.38990 0.63296 2.10375 1.36514 91 C - - > 1.38629 1.38629 1.38629 1.38629 0.12937 2.32160 3.76219 0.42077 1.06870 1.09861 0.40547 88 0.21220 2.95303 2.70566 2.62844 93 A - - : 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 89 2.39999 3.23264 0.21140 2.80712 94 G - - : 1.38629 1.38629 1.38629 1.38629 0.04758 3.76219 3.76219 1.46634 0.26236 1.09861 0.40547 90 2.39999 3.23264 0.21140 2.80712 95 G - - : 1.38629 1.38629 1.38629 1.38629 0.02407 3.73868 * 1.46634 0.26236 0.00000 * //