INFERNAL1/a [1.1.4 | Dec 2020] NAME Tombus_3_III ACC RF00215 DESC Tombus virus defective interfering (DI) RNA region 3 STATES 219 NODES 62 CLEN 70 W 86 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:24:56 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28 EFFN 3.838379 CKSUM 928879128 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 37.80 NC 34.70 EFP7GF -10.3186 0.71889 ECMLC 0.58666 -9.94689 0.82114 1600000 664777 0.001805 ECMGC 0.39007 -17.74681 -3.70536 1600000 95662 0.004181 ECMLI 0.55243 -9.19415 1.74395 1600000 505153 0.002376 ECMGI 0.41050 -13.50693 -0.87633 1600000 71417 0.005601 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 86 105 -7.573 -7.780 -0.034 -6.194 IL 1 1 2 1 4 2 27 89 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 27 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 3 26 86 105 -8.553 -0.014 -7.207 1.566 -1.858 -1.164 -1.653 D 4 2 3 5 3 0 22 84 104 -6.174 -1.687 -0.566 IL 5 5 3 5 3 2 26 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 3 25 85 104 -8.553 -0.014 -7.207 -1.602 -1.945 1.668 -2.102 D 7 5 3 8 3 0 21 83 103 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 25 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 2 24 84 103 -8.553 -0.014 -7.207 -0.925 1.431 -2.345 -0.787 D 10 8 3 11 3 0 21 82 102 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 24 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 2 23 82 102 -8.553 -0.014 -7.207 -0.918 -1.311 1.286 -0.668 D 13 11 3 14 3 0 20 81 101 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 23 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 22 81 101 -8.553 -0.049 -5.037 1.673 -1.679 -2.150 -1.865 D 16 14 3 17 3 0 19 80 100 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 23 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 2 22 80 100 -8.518 -0.014 -7.172 -1.808 -2.847 1.709 -1.706 D 19 17 3 20 3 0 19 79 99 -6.585 -1.055 -0.977 IL 20 20 3 20 3 1 22 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 21 79 99 -8.553 -0.014 -7.207 -1.107 -1.456 -1.496 1.494 D 22 20 3 23 3 0 18 78 98 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 21 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 20 78 98 -8.553 -0.014 -7.207 1.882 -3.545 -3.069 -3.207 D 25 23 3 26 3 0 17 77 97 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 20 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 19 77 97 -8.553 -0.014 -7.207 1.207 -1.190 -0.385 -1.037 D 28 26 3 29 3 0 17 76 96 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 19 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 18 76 96 -8.911 -0.013 -7.229 -1.875 -2.922 1.723 -1.766 D 31 29 3 32 3 0 16 75 95 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 18 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 72 - A - - MR 33 32 3 35 2 1 17 75 95 -9.039 -0.003 1.615 -2.102 -1.596 -1.423 D 34 32 3 35 2 0 16 74 94 -4.432 -0.068 IR 35 35 3 35 2 1 17 76 96 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 12 ] - - - - - - B 36 35 3 37 111 0 16 74 94 [ BEGL 13 ] - - - - - - S 37 36 1 38 4 0 0 38 56 -0.035 -7.183 -6.590 -7.230 [ MATP 14 ] 11 34 a u - - MP 38 37 1 42 6 2 2 38 56 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -1.204 0.802 -2.203 2.015 -2.232 -2.975 1.085 -1.137 -2.209 1.159 -2.722 -0.280 0.920 -2.321 -0.410 -1.402 ML 39 37 1 42 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 1 42 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 1 42 6 0 0 34 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 33 C G - - MP 44 43 6 48 6 2 2 36 54 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -5.631 -5.675 -5.238 -1.873 -1.123 -5.566 3.765 -4.797 -5.359 -1.737 -5.498 -3.720 -0.448 -5.682 -1.666 -4.194 ML 45 43 6 48 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 32 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 32 a u - - MP 50 49 6 54 6 2 2 34 52 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -0.417 -0.273 -0.112 1.875 -1.984 -2.823 1.207 -2.320 -2.039 1.105 -2.605 -0.455 1.083 -2.108 -0.219 -1.220 ML 51 49 6 54 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 53 49 6 54 6 0 0 30 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 31 g u - - MP 56 55 6 60 6 2 2 32 50 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -3.325 -1.550 -4.178 0.646 -4.906 -3.758 -0.343 -3.802 -3.050 1.322 0.597 2.976 -0.898 -3.963 -2.329 -2.586 ML 57 55 6 60 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 6 60 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 30 A U - - MP 62 61 6 66 6 2 2 30 48 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -2.285 -3.298 -1.730 3.493 -3.712 -4.507 -0.240 -3.738 -3.670 0.295 -4.219 -1.095 -0.415 -3.773 -1.811 -2.695 ML 63 61 6 66 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 29 C G - - MP 68 67 6 72 6 2 2 28 46 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -4.449 -4.472 -4.207 -0.780 -2.984 -4.659 3.189 1.521 -4.240 -0.662 -4.560 -2.551 0.525 -4.546 -0.685 -3.115 ML 69 67 6 72 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 28 U A - - MP 74 73 6 78 6 2 2 26 44 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -4.525 -4.527 -4.309 -0.764 -3.097 -4.791 1.246 -3.863 -4.328 -0.608 -4.669 -2.546 3.270 -4.625 0.974 -3.162 ML 75 73 6 78 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 27 C G - - MP 80 79 6 84 4 2 2 24 42 -7.573 -7.780 -0.071 -4.698 -4.493 -4.537 -4.273 -0.796 0.592 -4.744 3.370 -3.842 -4.306 -0.668 -4.632 -2.607 0.504 -4.596 -0.185 -3.173 ML 81 79 6 84 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 83 79 6 84 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 84 84 5 84 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 85 85 6 85 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - U - - - ML 86 85 6 88 3 1 1 21 39 -8.518 -0.014 -7.172 -2.538 -2.360 -3.309 1.821 D 87 85 6 88 3 0 0 20 39 -6.585 -2.098 -0.404 IL 88 88 3 88 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - U - - - ML 89 88 3 91 3 1 1 20 38 -8.518 -0.014 -7.172 -2.538 -2.360 -3.309 1.821 D 90 88 3 91 3 0 0 19 38 -6.585 -1.055 -0.977 IL 91 91 3 91 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - C - - - ML 92 91 3 94 3 1 1 18 37 -8.553 -0.014 -7.207 -3.144 1.856 -3.939 -2.304 D 93 91 3 94 3 0 0 18 37 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 22 - A - - - ML 95 94 3 97 3 1 1 17 36 -8.553 -0.014 -7.207 1.552 -1.929 -1.943 -0.878 D 96 94 3 97 3 0 0 17 35 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 23 - G - - - ML 98 97 3 100 3 1 1 16 34 -8.553 -0.014 -7.207 -2.752 -4.117 1.889 -3.484 D 99 97 3 100 3 0 0 16 34 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 24 - U - - - ML 101 100 3 103 3 1 1 14 33 -8.553 -0.014 -7.207 -2.055 -1.589 -2.803 1.715 D 102 100 3 103 3 0 0 15 33 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 25 - C - - - ML 104 103 3 106 3 1 1 13 31 -8.553 -0.014 -7.207 -3.144 1.856 -3.939 -2.304 D 105 103 3 106 3 0 0 13 32 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 26 - U - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 -2.603 -2.415 -3.374 1.828 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 111 36 1 112 3 0 2 50 69 -8.553 -0.014 -7.207 IL 112 112 2 112 3 1 1 53 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 35 - G - - - ML 113 112 2 115 3 1 2 50 69 -8.553 -0.014 -7.207 -1.454 -2.021 1.625 -1.717 D 114 112 2 115 3 0 0 48 68 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 52 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 36 - G - - - ML 116 115 3 118 3 1 2 49 68 -8.553 -0.014 -7.207 -1.919 -3.569 1.818 -2.993 D 117 115 3 118 3 0 0 47 67 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 51 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 37 - A - - - ML 119 118 3 121 3 1 2 48 67 -8.553 -0.014 -7.207 1.882 -3.545 -3.069 -3.207 D 120 118 3 121 3 0 0 46 66 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 50 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 38 - a - - - ML 122 121 3 124 3 1 2 46 66 -8.553 -0.014 -7.207 0.843 -1.378 0.130 -0.459 D 123 121 3 124 3 0 0 45 65 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 49 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 39 - A - - - ML 125 124 3 127 3 1 1 45 65 -8.553 -0.014 -7.207 1.080 -2.002 0.349 -1.465 D 126 124 3 127 3 0 0 44 63 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 48 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 40 - c - - - ML 128 127 3 130 3 1 1 44 63 -8.553 -0.014 -7.207 -1.269 0.842 -2.124 0.644 D 129 127 3 130 3 0 0 43 62 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 41 - G - - - ML 131 130 3 133 3 1 1 43 62 -8.553 -0.014 -7.207 0.369 -2.134 1.102 -1.581 D 132 130 3 133 3 0 0 42 61 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 42 - A - - - ML 134 133 3 136 3 1 1 42 61 -8.553 -0.014 -7.207 1.501 -2.226 -0.590 -1.778 D 135 133 3 136 3 0 0 41 60 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 43 - G - - - ML 137 136 3 139 3 1 1 41 60 -8.553 -0.014 -7.207 -2.752 -4.117 1.889 -3.484 D 138 136 3 139 3 0 0 40 59 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 44 - U - - - ML 140 139 3 142 3 1 1 40 59 -8.553 -0.014 -7.207 -0.245 -0.827 -1.603 1.178 D 141 139 3 142 3 0 0 39 58 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 45 - G - - - ML 143 142 3 145 3 1 1 39 58 -8.553 -0.014 -7.207 -0.169 -2.395 1.403 -1.853 D 144 142 3 145 3 0 0 38 57 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - u - - - ML 146 145 3 148 3 1 1 38 57 -8.553 -0.048 -5.040 0.008 -0.469 -0.876 0.788 D 147 145 3 148 3 0 0 37 56 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - A - - - ML 149 148 3 151 5 1 1 37 56 -4.142 -0.105 -7.403 -7.615 -8.507 1.191 -1.388 -0.813 -0.386 D 150 148 3 151 5 0 0 35 54 -5.204 -0.645 -4.465 -2.840 -2.753 IL 151 151 3 151 5 1 1 38 56 -1.845 -0.625 -4.579 -6.412 -5.685 0.000 0.000 0.000 0.000 [ MATP 45 ] 50 71 a u - - MP 152 151 3 156 6 2 2 36 55 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -2.741 -2.680 -2.856 2.867 -2.771 -3.730 1.156 -1.039 -2.942 0.896 -3.482 -0.900 0.660 -3.032 -0.772 -1.244 ML 153 151 3 156 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 3 156 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 3 156 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 51 70 A U - - MP 158 157 6 162 6 2 2 34 53 -9.379 -9.318 -0.089 -8.095 -4.303 -8.769 -2.099 -3.406 -3.429 3.539 -3.599 -4.454 -0.166 -2.801 -3.649 -0.037 -4.203 -1.683 -0.354 -3.738 -1.729 -2.232 ML 159 157 6 162 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 52 69 c g - - MP 164 163 6 168 6 2 2 32 51 -9.308 -9.248 -0.018 -8.024 -8.304 -8.699 -2.236 -2.385 -0.755 0.730 -2.147 -3.206 1.969 -2.593 -2.442 0.721 -1.926 -0.876 1.183 -2.544 1.811 -1.568 ML 165 163 6 168 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 30 49 -7.722 -6.451 -0.752 -6.430 -1.563 -4.643 -0.255 -1.206 1.054 -0.615 D 167 163 6 168 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 53 68 C G - - MP 170 169 6 174 6 2 2 30 49 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -3.779 -3.805 -3.748 -0.232 -2.872 -4.385 3.238 -3.539 -3.766 -0.105 -0.659 -1.942 0.754 -3.982 0.512 -2.712 ML 171 169 6 174 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 54 67 u a - - MP 176 175 6 180 6 2 2 28 47 -9.379 -9.318 -0.017 -8.095 -8.374 -8.769 -2.857 -2.884 -2.974 0.582 -2.491 -3.791 1.633 -3.001 -1.953 1.003 -3.519 -1.064 2.481 -3.134 0.889 -1.998 ML 177 175 6 180 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 180 180 5 180 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 55 66 G C - - MP 182 181 6 186 4 2 2 26 45 -7.573 -7.780 -0.305 -2.469 -3.678 -1.611 -3.584 1.413 -4.333 -4.218 0.607 -4.142 -3.885 3.047 -4.211 0.281 -0.008 -3.497 -1.693 -2.570 ML 183 181 6 186 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 186 186 5 186 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 56 - g - - - ML 188 187 6 190 3 1 1 23 42 -8.303 -0.115 -3.762 0.216 -0.678 0.422 -0.195 D 189 187 6 190 3 0 0 22 41 -7.857 -0.818 -1.223 IL 190 190 3 190 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 57 - c - - - ML 191 190 3 193 3 1 1 22 41 -8.391 -0.015 -7.046 -0.663 0.744 -0.741 0.131 D 192 190 3 193 3 0 0 21 39 -7.477 -2.990 -0.203 IL 193 193 3 193 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 58 - A - - - ML 194 193 3 196 3 1 1 21 39 -8.391 -0.015 -7.046 1.309 -1.462 -1.528 -0.299 D 195 193 3 196 3 0 0 20 38 -7.477 -0.473 -1.869 IL 196 196 3 196 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 59 - u - - - ML 197 196 3 199 3 1 1 20 38 -8.553 -0.014 -7.207 -0.221 -1.087 -0.279 0.885 D 198 196 3 199 3 0 0 19 38 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 60 - A - - - ML 200 199 3 202 3 1 1 18 37 -8.553 -0.014 -7.207 1.017 -0.699 -0.874 -0.297 D 201 199 3 202 3 0 0 18 37 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - G - - - ML 203 202 3 205 3 1 1 17 36 -8.553 -0.014 -7.207 -2.752 -4.117 1.889 -3.484 D 204 202 3 205 3 0 0 17 35 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - c - - - ML 206 205 3 208 3 1 1 16 34 -8.553 -0.014 -7.207 -0.259 0.930 -1.050 -0.367 D 207 205 3 208 3 0 0 16 34 -6.174 -1.687 -0.566 IL 208 208 3 208 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - A - - - ML 209 208 3 211 3 1 1 14 33 -8.553 -0.014 -7.207 1.231 -0.753 -0.897 -0.939 D 210 208 3 211 3 0 0 15 33 -6.174 -1.687 -0.566 IL 211 211 3 211 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - U - - - ML 212 211 3 214 3 1 1 13 31 -8.553 -0.014 -7.207 -2.603 -2.415 -3.374 1.828 D 213 211 3 214 3 0 0 13 32 -6.174 -1.687 -0.566 IL 214 214 3 214 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - A - - - ML 215 214 3 217 2 1 1 1 1 * 0.000 1.403 -2.131 -0.304 -1.654 D 216 214 3 217 2 0 0 0 0 * 0.000 IL 217 217 3 217 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 61 ] - - - - - - E 218 217 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Tombus_3_III ACC RF00215 DESC Tombus virus defective interfering (DI) RNA region 3 LENG 70 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:24:56 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 28 EFFN 5.082520 CKSUM 928879128 STATS LOCAL MSV -7.9310 0.71889 STATS LOCAL VITERBI -8.8730 0.71889 STATS LOCAL FORWARD -3.8207 0.71889 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28212 1.68871 1.25231 1.37853 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 0.00000 * 1 0.25769 2.81135 2.26224 2.76586 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 2 2.74545 2.81221 0.18464 3.11675 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 3 2.14085 0.32924 3.26779 2.08039 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 4 2.18942 2.38260 0.42786 1.93929 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 5 0.18470 2.63765 3.11896 2.93902 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.05260 4.33572 3.26621 1.46634 0.26236 1.09861 0.40547 6 2.89875 3.63407 0.16204 2.68694 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.02723 4.31034 4.31034 1.46634 0.26236 0.52257 0.89893 7 2.32800 2.59128 2.52629 0.29085 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 8 0.05608 4.20481 3.85066 3.99805 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 9 0.49858 2.28912 1.66126 2.28917 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 10 2.94653 3.68761 0.15444 2.72493 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 11 0.72265 1.82512 1.68230 1.78743 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 12 4.13515 0.09197 3.99149 2.93010 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 13 0.80010 1.82730 1.67314 1.59843 13 a - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 14 2.24543 3.21629 0.20597 3.21493 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 15 0.19831 3.15318 2.46848 2.94783 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 16 3.43998 0.19536 3.27731 2.22869 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 17 3.37355 2.00809 3.19026 0.23531 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 18 3.36589 0.23478 3.19190 2.01268 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.05260 4.33572 3.26621 1.46634 0.26236 1.09861 0.40547 19 3.49871 3.32377 4.03958 0.08758 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02723 4.31034 4.31034 1.46634 0.26236 1.59208 0.22753 20 3.49871 3.32377 4.03958 0.08758 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02723 4.31034 4.31034 1.46634 0.26236 0.52257 0.89893 21 3.96247 0.06835 4.46863 3.33564 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 22 0.26228 2.92481 2.95604 2.07940 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 23 3.62401 4.60142 0.05410 4.13858 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 24 3.08115 2.63542 3.59958 0.15657 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 25 3.96247 0.06835 4.46863 3.33564 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 26 3.54380 3.36287 4.08545 0.08377 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 27 1.65733 3.34991 0.31392 3.13064 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 28 0.41495 3.35225 1.34303 3.13345 28 A - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 29 2.51693 3.43921 0.44179 1.40929 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 30 2.98184 2.76237 2.68743 0.20077 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 31 3.37677 1.86380 1.86952 0.42074 31 U - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 32 1.59979 1.57757 1.36035 1.09359 32 u - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 33 2.68880 4.12609 0.11016 3.90198 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 34 1.88823 1.25608 1.78691 0.92529 34 u - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 35 2.58925 2.88245 0.21769 2.74033 35 G - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 36 2.90698 4.16300 0.09810 3.76197 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 37 0.05608 4.20481 3.85066 3.99805 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 38 0.76760 2.47146 1.26816 1.77159 38 a - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 39 0.59182 3.03921 1.10558 2.69139 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 40 2.48132 0.74327 3.09850 0.92711 40 c - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 41 1.12166 3.10602 0.57066 2.74369 41 G - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 42 0.30235 3.18707 1.79980 2.91331 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 43 3.62401 4.60142 0.05410 4.13858 43 G - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 44 1.59220 2.03884 2.64520 0.51860 44 U - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 45 1.53592 3.28237 0.36587 2.92602 45 G - - - 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 46 1.38911 1.73579 2.02275 0.81610 46 u - - - 1.38629 1.38629 1.38629 1.38629 0.05252 4.33572 3.26830 1.46634 0.26236 1.09861 0.40547 47 0.51224 2.48187 2.00030 1.70393 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.09076 2.61270 4.31042 0.82268 0.57848 0.52342 0.89769 48 0.64496 1.71322 1.95379 1.87540 50 A - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 49 0.18012 3.02645 2.82886 2.86011 51 A - - < 1.38629 1.38629 1.38629 1.38629 0.13305 4.33572 2.19386 1.46634 0.26236 1.09861 0.40547 50 1.87346 1.27612 1.95081 0.85536 52 u - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23214 4.23214 1.46634 0.26236 0.21097 1.65968 51 2.97755 0.43599 2.22691 1.63682 53 C - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 52 2.23883 1.61488 1.79085 0.63926 54 U - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 53 1.62100 2.30615 0.48640 2.43247 55 G - - < 1.38629 1.38629 1.38629 1.38629 0.21611 4.33572 1.70782 1.46634 0.26236 1.09861 0.40547 54 1.24995 1.88190 1.04238 1.56750 56 g - - _ 1.38629 1.38629 1.38629 1.38629 0.10725 4.15159 2.45388 1.46634 0.26236 0.48291 0.95968 55 1.97293 0.80065 1.92320 1.32510 57 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02992 4.21729 4.21729 1.46634 0.26236 2.44497 0.09072 56 0.42402 2.55599 2.61416 1.63608 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02992 4.21729 4.21729 1.46634 0.26236 0.19050 1.75183 57 1.58422 2.25017 1.56506 0.73306 59 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 58 0.63886 1.89871 2.04689 1.64398 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 59 3.62401 4.60142 0.05410 4.13858 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 60 1.61728 0.67360 2.17111 1.72797 62 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 61 0.47932 1.92892 2.07250 2.21075 63 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 62 3.54380 3.36287 4.08545 0.08377 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 63 0.36824 3.12510 1.58497 2.82748 65 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 64 2.67709 0.58102 2.15399 1.36301 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 65 0.87748 1.99178 1.15340 2.02379 67 a - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 66 2.25347 2.92237 0.25535 2.71035 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 67 1.83732 2.22005 0.52635 1.95620 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 68 2.95278 3.02171 2.91906 0.16830 70 U - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 69 2.19856 2.12794 1.74006 0.52013 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.02653 4.33572 4.33572 1.46634 0.26236 1.09861 0.40547 70 0.22544 3.03056 2.61888 2.51745 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.01335 4.32254 * 1.46634 0.26236 0.00000 * //