INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-9 ACC RF00237 DESC mir-9/mir-79 microRNA precursor family STATES 190 NODES 45 CLEN 62 W 77 ALPH RNA RF no CONS yes MAP yes DATE Mon Jun 26 15:54:15 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates_3/RF00237/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 43 EFFN 4.375061 CKSUM 478314172 NULL 0.000 0.000 0.000 0.000 GA 58.60 TC 58.80 NC 58.50 EFP7GF -12.6081 0.71924 ECMLC 0.65564 -4.60056 3.84820 1600000 305416 0.003929 ECMGC 0.44001 -12.57300 0.53400 1600000 127851 0.003129 ECMLI 0.62716 -3.60358 4.77285 1600000 229452 0.005230 ECMGI 0.50394 -7.78566 3.17797 1600000 100351 0.003986 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 96 -7.709 -7.916 -0.031 -6.330 IL 1 1 2 1 4 1 8 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 9 77 96 -8.682 -0.012 -7.336 0.309 -0.269 -0.643 0.368 D 4 2 3 5 3 0 3 76 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 7 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 8 76 95 -8.682 -0.012 -7.336 -0.889 -1.235 -1.427 1.413 D 7 5 3 8 3 0 3 75 94 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 7 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 7 75 94 -9.035 -0.012 -7.353 -2.930 1.807 -3.740 -1.765 D 10 8 3 11 3 0 2 74 93 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 5 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 67 - U - - MR 12 11 3 14 3 1 7 74 93 -9.035 -0.012 -7.353 -0.418 -1.033 -1.487 1.267 D 13 11 3 14 3 0 1 73 92 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 5 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 66 - g - - MR 15 14 3 17 3 1 6 73 92 -9.035 -0.012 -7.353 -0.386 -0.347 0.526 0.013 D 16 14 3 17 3 0 1 72 91 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 4 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 65 - g - - MR 18 17 3 20 5 1 6 72 91 -7.738 -0.025 -7.553 -7.765 -8.657 0.446 -1.404 0.553 -0.336 D 19 17 3 20 5 0 0 71 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 3 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 4 64 U A - - MP 21 20 3 25 6 2 7 71 90 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -6.231 -6.087 -6.085 -2.369 -5.006 -6.662 -0.687 -5.711 -6.038 -2.243 -6.459 -3.991 3.852 -6.361 -2.582 -2.618 ML 22 20 3 25 6 1 2 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 2 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 71 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 3 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 5 63 U A - - MP 27 26 6 31 6 2 7 69 88 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -5.408 -5.418 -5.088 -1.613 -3.743 -5.486 0.602 -4.552 -5.109 -1.467 -5.407 -3.429 3.640 -5.443 -0.196 -3.789 ML 28 26 6 31 6 1 2 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 69 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 6 62 U G - - MP 33 32 6 37 6 2 6 67 86 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -4.968 -5.043 -4.574 -1.287 -3.168 -4.908 1.146 -4.002 -4.628 -1.175 -4.874 -3.150 2.038 -4.977 3.037 -3.465 ML 34 32 6 37 6 1 2 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 67 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 61 G C - - MP 39 38 6 43 6 2 6 65 84 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -5.466 -3.527 -5.606 -0.339 -6.370 -5.050 -1.510 -6.009 -2.169 3.762 -5.176 -1.267 -1.824 -4.930 -3.579 -4.514 ML 40 38 6 43 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 2 65 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 60 G C - - MP 45 44 6 49 6 2 6 63 82 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -5.441 -3.516 -5.568 -0.334 -6.293 -5.008 -1.455 -5.994 -4.890 3.749 -1.739 -1.270 -1.774 -4.880 -3.517 -4.495 ML 46 44 6 49 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 63 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 2 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 59 U A - - MP 51 50 6 55 6 2 5 61 80 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -5.224 -5.264 -4.992 -1.536 -1.063 -5.451 0.555 -4.540 -5.011 -1.412 -5.349 -3.339 3.650 -5.308 -1.430 -3.717 ML 52 50 6 55 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 61 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 58 u a - - MP 57 56 6 61 6 2 5 59 78 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -2.549 -2.514 -2.701 0.948 -2.515 -3.562 1.330 -2.899 -2.738 1.179 -3.288 0.447 2.178 -2.850 -0.465 0.481 ML 58 56 6 61 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 2 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 57 a u - - MP 63 62 6 67 6 2 5 57 76 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -1.265 -1.512 -0.815 2.254 -1.924 -2.779 1.213 -1.320 -1.999 0.851 -2.570 -0.595 1.098 -1.742 0.010 -1.194 ML 64 62 6 67 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 56 u a - - MP 69 68 6 73 6 2 5 55 74 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -1.932 -2.115 -2.117 0.891 -1.305 -2.965 1.414 -2.404 -2.173 0.786 -2.741 -0.698 2.203 -0.937 0.563 -0.473 ML 70 68 6 73 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 55 c g - - MP 75 74 6 79 6 2 5 53 72 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -2.044 -2.219 -1.428 0.824 -1.664 -2.196 2.536 -1.516 -2.277 0.734 -2.841 -0.773 1.180 -2.370 0.370 -1.432 ML 76 74 6 79 6 1 1 52 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 49 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 53 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 54 U A - - MP 81 80 6 85 6 2 4 51 70 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -4.509 -4.538 -4.401 -0.850 -1.321 -4.975 0.959 -4.069 -4.411 -0.723 -4.812 -2.615 3.433 -4.664 0.114 -3.239 ML 82 80 6 85 6 1 1 50 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 53 A U - - MP 87 86 6 91 6 2 4 49 68 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -5.171 -3.942 -4.971 3.800 -6.152 -7.413 -1.767 -4.922 -4.951 -0.432 -5.558 -1.261 -2.159 -6.290 -3.694 -3.823 ML 88 86 6 91 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 52 G C - - MP 93 92 6 97 6 2 4 47 66 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -6.101 -3.767 -6.481 -0.775 -7.096 -5.195 -2.127 -6.714 -5.114 3.845 -5.378 -1.548 -2.489 -5.326 -4.263 -5.339 ML 94 92 6 97 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 51 C G - - MP 99 98 6 103 6 2 3 45 64 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -5.425 -5.494 -4.941 -1.630 -3.442 -5.217 3.700 -4.328 -5.017 -1.498 -5.196 -3.540 -0.005 -5.389 -0.242 -3.819 ML 100 98 6 103 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 44 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 50 U A - - MP 105 104 6 109 4 2 2 43 62 -7.709 -7.916 -0.031 -6.330 -6.142 -5.989 -5.749 -2.210 -4.366 -6.131 -0.042 -5.167 -5.742 -2.151 -6.025 -3.853 3.810 -6.180 -1.995 -4.235 ML 106 104 6 109 4 1 1 44 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 43 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 108 104 6 109 4 0 0 42 62 -4.568 -4.250 -2.265 -0.520 IL 109 109 5 109 4 1 1 45 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 19 - G - - - ML 111 110 6 113 3 1 1 41 60 -8.682 -0.012 -7.336 -1.454 -1.984 1.605 -1.552 D 112 110 6 113 3 0 0 40 59 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 20 - U - - - ML 114 113 3 116 3 1 1 40 59 -9.035 -0.012 -7.353 -2.169 -1.561 -2.917 1.725 D 115 113 3 116 3 0 0 38 57 -5.620 -0.734 -1.403 IL 116 116 3 116 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 49 - A - - MR 117 116 3 119 3 1 1 39 58 -9.035 -0.012 -7.353 1.901 -3.788 -3.294 -3.470 D 118 116 3 119 3 0 0 37 56 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 48 - A - - MR 120 119 3 122 5 1 1 38 57 -7.738 -0.025 -7.553 -7.765 -8.657 1.763 -2.143 -2.485 -2.309 D 121 119 3 122 5 0 0 36 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 122 122 3 122 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 47 A U - - MP 123 122 3 127 6 2 2 37 56 -5.760 -9.386 -0.042 -8.162 -8.442 -8.837 -4.852 -3.606 -4.809 3.725 -6.375 -7.322 -1.953 -4.844 -4.665 -0.051 -5.295 -0.177 -2.103 -5.977 -3.844 -3.593 ML 124 122 3 127 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 3 127 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 3 127 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 36 55 -2.856 -3.119 -0.595 -4.774 -5.550 -5.211 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 46 U A - - MP 129 128 6 133 6 2 2 35 54 -9.447 -9.386 -0.017 -8.162 -8.442 -8.837 -5.918 -5.884 -5.862 -2.293 -4.956 -6.489 -0.717 -5.625 -5.843 -2.123 -6.301 -3.955 3.850 -3.186 -2.576 -4.255 ML 130 128 6 133 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 45 G C - - MP 135 134 6 139 6 2 2 33 52 -9.447 -5.755 -0.042 -8.162 -8.442 -8.837 -5.681 -3.600 -5.901 -0.460 -6.844 -5.147 -1.859 -6.274 -4.975 3.780 -5.260 -0.560 -2.143 -5.106 -3.958 -4.772 ML 136 134 6 139 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 32 51 -2.583 -0.430 -6.094 -4.261 -5.367 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 43 A U - - MP 141 140 6 145 4 2 2 31 49 -7.709 -7.916 -0.050 -5.308 -4.210 -0.961 -4.271 3.456 -5.252 -5.849 -1.018 -4.462 -4.159 1.078 -4.733 -0.159 -1.190 -4.854 -2.864 -3.106 ML 142 140 6 145 4 1 1 31 51 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 33 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - G - - - ML 147 146 6 149 3 1 1 28 47 -8.665 -0.013 -7.319 -0.693 -1.875 1.303 -0.639 D 148 146 6 149 3 0 0 27 46 -6.421 -1.934 -0.461 IL 149 149 3 149 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - U - - - ML 150 149 3 152 3 1 1 27 46 -8.665 -0.013 -7.319 -1.259 -1.791 -2.485 1.639 D 151 149 3 152 3 0 0 26 45 -6.421 -1.255 -0.812 IL 152 152 3 152 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - G - - - ML 153 152 3 155 3 1 1 26 45 -8.682 -0.012 -7.336 -0.206 -1.592 1.029 -0.394 D 154 152 3 155 3 0 0 25 44 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - u - - - ML 156 155 3 158 3 1 1 25 43 -4.866 -0.060 -7.336 0.180 -0.702 -0.721 0.718 D 157 155 3 158 3 0 0 23 42 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 26 45 -1.607 -0.687 -4.308 0.000 0.000 0.000 0.000 [ MATL 34 ] 31 - u - - - ML 159 158 3 161 3 1 1 23 42 -8.682 -0.012 -7.336 -0.035 -0.479 -0.741 0.772 D 160 158 3 161 3 0 0 23 41 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 32 - u - - - ML 162 161 3 164 3 1 1 22 41 -8.682 -0.012 -7.336 0.456 -0.903 -0.504 0.473 D 163 161 3 164 3 0 0 22 40 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 33 - u - - - ML 165 164 3 167 3 1 1 21 40 -8.682 -0.012 -7.336 -0.019 -0.368 -1.041 0.810 D 166 164 3 167 3 0 0 20 39 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 34 - u - - - ML 168 167 3 170 3 1 1 20 38 -8.682 -0.012 -7.336 0.284 -0.787 -0.588 0.620 D 169 167 3 170 3 0 0 19 38 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - a - - - ML 171 170 3 173 3 1 1 19 37 -8.682 -0.607 -1.552 0.238 -0.555 0.051 0.142 D 172 170 3 173 3 0 0 18 37 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - a - - - ML 174 173 3 176 3 1 1 18 36 -3.230 -0.178 -6.748 0.848 -0.981 -0.561 0.023 D 175 173 3 176 3 0 0 15 34 -8.781 -1.957 -0.434 IL 176 176 3 176 3 1 1 19 37 -1.649 -0.649 -4.533 0.000 0.000 0.000 0.000 [ MATL 40 ] 39 - u - - - ML 177 176 3 179 3 1 1 16 34 -8.263 -0.017 -6.917 0.214 -0.718 -0.143 0.408 D 178 176 3 179 3 0 0 15 33 -8.447 -0.542 -1.687 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 40 - a - - - ML 180 179 3 182 3 1 1 14 33 -8.602 -0.013 -7.256 0.595 -0.224 -0.761 0.061 D 181 179 3 182 3 0 0 14 33 -7.042 -0.925 -1.102 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - c - - - ML 183 182 3 185 3 1 1 13 31 -8.666 -0.013 -7.320 -0.765 0.901 -1.486 0.247 D 184 182 3 185 3 0 0 13 32 -6.406 -1.919 -0.466 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - u - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 0.392 -1.096 -0.147 0.397 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-9 ACC RF00237 DESC mir-9/mir-79 microRNA precursor family LENG 62 MAXL 136 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Jun 26 15:54:15 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 43 EFFN 6.500916 CKSUM 478314172 STATS LOCAL MSV -7.9376 0.71924 STATS LOCAL VITERBI -8.5322 0.71924 STATS LOCAL FORWARD -4.1157 0.71924 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27951 1.71141 1.52590 1.12766 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 0.00000 * 1 1.16294 1.57395 1.85711 1.12675 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 2 2.17516 2.43955 2.49786 0.33275 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 3 3.89402 0.09179 4.39995 2.89933 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 4 5.02155 4.01638 4.93832 0.03230 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 5 4.18779 2.67023 4.04679 0.10747 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 6 3.88494 2.21515 3.75421 0.16618 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 7 3.23522 4.16038 0.07453 4.08226 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 8 3.24090 4.13785 0.07500 4.06476 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 9 4.09522 2.25862 3.96366 0.15099 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 10 2.00925 1.90928 1.44797 0.72841 10 u - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 11 0.91215 1.65167 1.77559 1.43873 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 12 1.93293 1.63181 1.89118 0.67569 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 13 1.89717 0.77191 1.93974 1.41002 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 14 3.60126 2.07500 3.43288 0.20474 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 15 0.07665 4.37667 3.07083 4.21077 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 16 3.44430 4.42962 0.05790 4.38948 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 17 3.99700 0.15089 3.87019 2.29433 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 18 4.62642 3.34745 4.56314 0.05699 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 19 2.65502 2.88460 0.22084 2.63140 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 20 3.26619 2.64052 3.78215 0.14185 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 21 0.12312 4.47412 2.42301 4.14850 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.05856 3.09156 4.46963 0.44511 1.02375 1.09861 0.40547 22 4.84327 3.84516 4.76524 0.03852 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 23 3.25898 4.27420 0.07004 4.18024 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 24 0.22496 3.91828 1.86509 3.62332 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.03664 4.46963 3.70821 1.46634 0.26236 1.09861 0.40547 25 2.01457 2.95137 0.40709 1.90535 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02348 4.45647 4.45647 1.46634 0.26236 1.42101 0.27637 26 2.43431 2.94528 3.47449 0.18780 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02348 4.45647 4.45647 1.46634 0.26236 0.65959 0.72787 27 1.60305 2.72597 0.58723 1.72951 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 28 1.25800 1.94232 1.91377 0.85594 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05856 3.09156 4.46963 0.44511 1.02375 1.09861 0.40547 29 1.43097 1.75211 1.92264 0.81804 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 30 1.04820 2.11347 1.74971 1.03624 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 31 1.41372 1.66163 2.17533 0.79106 33 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 32 1.17921 2.01441 1.81087 0.92743 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 33 1.22491 1.79646 1.31610 1.30140 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.47797 4.46963 0.99829 1.46634 0.26236 1.09861 0.40547 34 0.74601 2.17838 1.81205 1.38949 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.16161 2.02939 4.02793 0.37984 1.15192 1.36737 0.29407 35 1.24069 1.94960 1.46127 1.08903 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03182 4.15658 4.15658 1.46634 0.26236 0.30988 1.32252 36 0.94388 1.52829 1.96060 1.37356 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02461 4.41001 4.41001 1.46634 0.26236 0.47984 0.96465 37 2.08329 0.67586 2.56908 1.23733 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02346 4.45730 4.45730 1.46634 0.26236 1.40350 0.28201 38 1.10060 2.28882 1.46853 1.09160 42 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02346 4.45730 4.45730 1.46634 0.26236 0.67623 0.71035 39 3.80350 1.97626 3.69067 0.20559 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.05856 3.09156 4.46963 0.44511 1.02375 1.09861 0.40547 40 4.33125 0.10900 4.13818 2.60144 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 41 0.04947 4.38975 3.65688 4.60015 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 42 4.36249 3.15432 4.26686 0.07197 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 43 0.12094 3.02389 3.47447 3.37202 48 A - - - 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 44 0.04074 4.51915 4.14954 4.32368 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 45 0.06553 4.75682 3.17036 4.35429 50 A - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 46 2.92896 4.01503 0.09948 3.76370 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 47 4.48619 0.07124 4.30479 3.12363 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 48 4.40506 3.48057 4.18184 0.06004 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 49 0.26084 3.59372 1.78604 3.36754 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 50 1.75488 2.04006 0.65241 1.73577 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 51 0.98272 1.86647 1.30108 1.61544 56 a - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 52 1.67376 1.85352 1.37106 0.91146 57 u - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 53 1.04628 1.95070 1.72759 1.11209 58 a - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 54 0.13182 4.11940 2.45371 3.85014 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 55 4.22505 0.11390 3.22597 2.93165 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 56 3.53934 0.10618 4.01757 2.92425 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 57 1.30590 3.90722 0.38166 3.64016 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 58 0.16223 4.21166 2.15891 3.93813 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 59 0.04223 5.17122 3.82430 4.27992 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 60 1.06502 2.55597 0.93294 1.69136 65 g - - : 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 61 1.77146 1.61765 0.94303 1.41839 66 g - - : 1.38629 1.38629 1.38629 1.38629 0.02317 4.46963 4.46963 1.46634 0.26236 1.09861 0.40547 62 1.74584 2.25353 2.57561 0.43949 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.01165 4.45811 * 1.46634 0.26236 0.00000 * //