INFERNAL1/a [1.1.4 | Dec 2020] NAME SNORD56 ACC RF00275 DESC Small nucleolar RNA SNORD56 STATES 217 NODES 66 CLEN 71 W 86 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:29:43 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 7 EFFN 2.471191 CKSUM 2827911804 NULL 0.000 0.000 0.000 0.000 GA 36.00 TC 36.30 NC 35.00 EFP7GF -9.1802 0.71879 ECMLC 0.65484 -5.79222 3.05882 1600000 394766 0.003040 ECMGC 0.40992 -16.43515 -2.95057 1600000 100615 0.003976 ECMLI 0.63622 -3.91797 4.61213 1600000 272954 0.004396 ECMGI 0.41850 -12.05495 0.42848 1600000 74297 0.005384 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 86 105 -7.154 -7.361 -0.046 -5.776 IL 1 1 2 1 4 1 31 90 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 30 86 105 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 4 2 3 5 3 0 25 85 104 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 29 87 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 72 - A - - MR 6 5 3 8 5 1 29 85 104 -7.263 -0.035 -7.078 -7.291 -8.182 1.398 -1.778 -0.599 -1.276 D 7 5 3 8 5 0 23 84 103 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 27 86 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 71 u g - - MP 9 8 3 13 6 2 29 84 103 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -4.174 -4.209 -3.902 -0.511 -2.647 -4.325 2.406 -3.436 -3.947 -0.336 -4.250 -2.310 0.845 -4.243 2.682 -2.812 ML 10 8 3 13 6 1 25 83 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 24 83 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 20 81 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 26 84 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 26 84 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 70 A U - - MP 15 14 6 19 6 2 27 82 101 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -3.665 -2.646 -3.761 3.166 -4.480 -5.257 -0.217 -3.917 -3.610 1.242 -4.183 1.023 -0.456 -4.302 -2.108 -2.576 ML 16 14 6 19 6 1 24 81 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 22 81 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 20 80 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 25 82 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 25 82 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 69 c g - - MP 21 20 6 25 4 2 25 80 99 -7.154 -7.361 -0.046 -5.776 -2.817 -2.885 -0.203 0.487 -2.359 -3.647 2.722 -2.909 -2.932 0.618 -3.433 -1.162 1.193 -3.078 0.659 -1.963 ML 22 20 6 25 4 1 23 81 100 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 21 80 100 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 19 79 99 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 24 82 102 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - A - - - ML 27 26 6 29 3 1 23 78 97 -8.157 -0.018 -6.811 1.350 -1.436 -1.444 -0.487 D 28 26 6 29 3 0 19 76 96 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 23 80 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 30 29 3 32 3 1 22 77 96 -8.157 -0.018 -6.811 1.409 -1.790 -0.630 -1.291 D 31 29 3 32 3 0 18 75 95 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 22 79 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - u - - - ML 33 32 3 35 3 1 21 76 95 -8.536 -0.016 -6.853 -0.056 -0.379 -0.578 0.677 D 34 32 3 35 3 0 17 74 93 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 21 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 68 - A - - MR 36 35 3 38 3 1 21 75 94 -8.536 -0.016 -6.853 1.791 -2.763 -2.356 -2.345 D 37 35 3 38 3 0 15 73 92 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 20 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 67 - G - - MR 39 38 3 41 3 1 20 74 93 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 40 38 3 41 3 0 14 72 91 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 19 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 66 - U - - MR 42 41 3 44 3 1 19 73 92 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 43 41 3 44 3 0 13 71 90 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 18 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 65 - C - - MR 45 44 3 47 3 1 18 72 91 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 46 44 3 47 3 0 13 70 89 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 17 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 64 - U - - MR 48 47 3 50 3 1 17 71 90 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 49 47 3 50 3 0 12 69 88 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 16 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 63 - G - - MR 51 50 3 53 3 1 17 70 89 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 52 50 3 53 3 0 11 68 87 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 16 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 62 - G - - MR 54 53 3 56 3 1 16 69 88 -8.536 -0.016 -6.853 -0.958 -1.827 1.379 -0.732 D 55 53 3 56 3 0 10 67 86 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 15 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 61 - G - - MR 57 56 3 59 3 1 15 68 87 -8.536 -0.016 -6.853 -0.958 -1.827 1.379 -0.732 D 58 56 3 59 3 0 9 66 85 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 14 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 60 - U - - MR 60 59 3 62 3 1 14 67 86 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 61 59 3 62 3 0 8 65 84 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 13 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 59 - U - - MR 63 62 3 65 3 1 13 66 85 -8.536 -0.016 -6.853 -0.620 -0.551 -0.850 1.079 D 64 62 3 65 3 0 8 64 83 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 12 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 58 - U - - MR 66 65 3 68 3 1 13 64 84 -8.536 -0.016 -6.853 -0.975 -0.136 -1.737 1.190 D 67 65 3 68 3 0 7 63 82 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 12 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 57 - C - - MR 69 68 3 71 3 1 12 63 83 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 70 68 3 71 3 0 6 62 81 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 11 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 56 - A - - MR 72 71 3 74 3 1 11 62 82 -8.536 -0.016 -6.853 1.406 -1.787 -0.622 -1.287 D 73 71 3 74 3 0 5 61 80 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 10 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 55 - u - - MR 75 74 3 77 3 1 10 61 81 -8.536 -0.016 -6.853 -0.492 0.250 -0.828 0.619 D 76 74 3 77 3 0 5 60 79 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 9 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 54 - A - - MR 78 77 3 80 3 1 10 60 79 -8.536 -0.016 -6.853 1.354 -1.442 -1.448 -0.496 D 79 77 3 80 3 0 4 59 78 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 8 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 53 - G - - MR 81 80 3 83 3 1 9 59 78 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 82 80 3 83 3 0 3 58 77 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 8 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 52 - U - - MR 84 83 3 86 3 1 8 58 77 -8.536 -0.016 -6.853 -0.925 0.040 -1.694 1.095 D 85 83 3 86 3 0 2 57 76 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 7 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 51 - U - - MR 87 86 3 89 3 1 8 57 76 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 88 86 3 89 3 0 2 56 75 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 6 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 50 - G - - MR 90 89 3 92 3 1 7 56 75 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 91 89 3 92 3 0 1 55 74 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 6 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 49 - U - - MR 93 92 3 95 3 1 6 55 74 -8.536 -0.016 -6.853 -0.424 -1.100 -1.584 1.295 D 94 92 3 95 3 0 0 54 73 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 5 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 48 - G - - MR 96 95 3 98 3 1 6 54 73 -8.536 -0.016 -6.853 -0.406 -2.133 1.421 -1.556 D 97 95 3 98 3 0 0 53 72 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 4 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 47 - A - - MR 99 98 3 101 3 1 5 53 72 -8.536 -0.016 -6.853 1.791 -2.763 -2.356 -2.345 D 100 98 3 101 3 0 0 52 71 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 3 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 46 - G - - MR 102 101 3 104 3 1 5 52 71 -8.536 -0.016 -6.853 -0.375 -2.112 1.407 -1.535 D 103 101 3 104 3 0 0 51 70 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 3 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 45 - U - - MR 105 104 3 107 3 1 4 51 70 -8.536 -0.016 -6.853 -0.424 -1.100 -1.584 1.295 D 106 104 3 107 3 0 0 50 69 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 2 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 44 - g - - MR 108 107 3 110 3 1 3 50 69 -8.536 -0.016 -6.853 0.283 -1.157 0.580 -0.252 D 109 107 3 110 3 0 0 49 68 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 2 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 43 - A - - MR 111 110 3 113 3 1 3 49 68 -8.536 -0.016 -6.853 1.353 -0.845 -1.433 -0.946 D 112 110 3 113 3 0 0 48 67 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 42 - U - - MR 114 113 3 116 3 1 3 48 67 -8.536 -0.016 -6.853 -1.153 -0.604 -1.900 1.392 D 115 113 3 116 3 0 0 47 66 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 41 - C - - MR 117 116 3 119 3 1 2 47 66 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 118 116 3 119 3 0 0 46 65 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 40 - C - - MR 120 119 3 122 3 1 2 46 65 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 121 119 3 122 3 0 0 45 64 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 39 - A - - MR 123 122 3 125 3 1 1 45 64 -8.536 -0.016 -6.853 1.791 -2.763 -2.356 -2.345 D 124 122 3 125 3 0 0 44 63 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 38 - c - - MR 126 125 3 128 3 1 1 44 63 -3.493 -0.148 -6.853 -0.223 0.794 -1.415 0.049 D 127 125 3 128 3 0 0 42 61 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 45 64 -2.324 -0.400 -4.563 0.000 0.000 0.000 0.000 [ MATR 40 ] - 36 - U - - MR 129 128 3 131 3 1 1 43 62 -8.536 -0.016 -6.853 -1.849 -1.783 -2.599 1.708 D 130 128 3 131 3 0 0 41 60 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 35 - U - - MR 132 131 3 134 3 1 1 42 61 -8.536 -0.143 -3.445 -1.115 -0.515 -1.864 1.358 D 133 131 3 134 3 0 0 40 59 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 34 - G - - MR 135 134 3 137 3 1 1 41 60 -8.410 -0.018 -6.728 -1.707 -2.947 1.751 -2.334 D 136 134 3 137 3 0 0 39 58 -7.226 -2.404 -0.314 IR 137 137 3 137 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 33 - A - - MR 138 137 3 140 3 1 1 40 59 -8.410 -0.124 -3.654 1.744 -2.492 -2.112 -2.046 D 139 137 3 140 3 0 0 38 57 -7.226 -2.404 -0.314 IR 140 140 3 140 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 32 - C - - MR 141 140 3 143 3 1 1 39 58 -8.306 -0.019 -6.623 -1.614 1.588 -2.434 -1.054 D 142 140 3 143 3 0 0 38 57 -7.648 -0.468 -1.878 IR 143 143 3 143 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 31 - G - - MR 144 143 3 146 3 1 1 38 57 -8.536 -0.016 -6.853 -1.987 -3.266 1.801 -2.653 D 145 143 3 146 3 0 0 37 56 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 30 - A - - MR 147 146 3 149 3 1 1 37 56 -8.536 -0.016 -6.853 1.791 -2.763 -2.356 -2.345 D 148 146 3 149 3 0 0 36 55 -6.390 -1.568 -0.620 IR 149 149 3 149 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 29 - C - - MR 150 149 3 152 3 1 1 36 55 -8.536 -0.016 -6.853 -2.215 1.730 -3.046 -1.534 D 151 149 3 152 3 0 0 35 54 -6.390 -1.568 -0.620 IR 152 152 3 152 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 28 - A - - MR 153 152 3 155 3 1 1 35 54 -8.536 -0.016 -6.853 1.406 -1.787 -0.622 -1.287 D 154 152 3 155 3 0 0 34 53 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 27 - A - - MR 156 155 3 158 5 1 1 34 53 -7.263 -0.035 -7.078 -7.291 -8.182 1.031 -0.682 -0.581 -0.589 D 157 155 3 158 5 0 0 33 52 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 8 26 G C - - MP 159 158 3 163 6 2 2 33 52 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -4.249 -0.338 -4.275 0.532 -4.949 -4.520 -0.396 -4.711 -4.132 3.462 -4.480 -0.569 -0.673 -4.057 -2.362 -3.225 ML 160 158 3 163 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 9 25 A U - - MP 165 164 6 169 6 2 2 31 50 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -4.151 -3.095 -4.137 3.522 -4.662 -5.765 -0.338 -4.155 -4.020 0.690 -4.585 -0.517 -0.753 -4.888 -2.277 -2.954 ML 166 164 6 169 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 10 24 u a - - MP 171 170 6 175 6 2 2 29 48 -9.190 -9.129 -0.020 -7.906 -8.185 -8.580 -2.907 -2.993 -2.971 0.416 -0.058 -3.705 1.734 -2.933 -2.999 0.490 -3.492 -1.263 2.185 -3.163 1.508 -2.017 ML 172 170 6 175 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 11 23 g c - - MP 177 176 6 181 4 2 2 27 46 -7.154 -7.361 -0.046 -5.776 -3.528 0.559 -3.567 0.970 -4.160 -4.208 0.146 -3.976 -3.607 2.991 -4.002 0.619 -0.106 -3.561 -1.735 -2.539 ML 178 176 6 181 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 27 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 12 - g - - - ML 183 182 6 185 3 1 1 24 43 -8.157 -0.018 -6.811 -0.101 -1.268 0.879 -0.298 D 184 182 6 185 3 0 0 23 42 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 13 - C - - - ML 186 185 3 188 3 1 1 23 42 -8.157 -0.018 -6.811 -1.411 1.408 -2.256 -0.393 D 187 185 3 188 3 0 0 22 41 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 14 - A - - - ML 189 188 3 191 3 1 1 22 41 -8.157 -0.018 -6.811 1.791 -2.763 -2.356 -2.345 D 190 188 3 191 3 0 0 21 40 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 15 - A - - - ML 192 191 3 194 3 1 1 21 40 -8.157 -0.018 -6.811 1.791 -2.763 -2.356 -2.345 D 193 191 3 194 3 0 0 20 39 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 16 - U - - - ML 195 194 3 197 3 1 1 20 39 -8.157 -0.018 -6.811 -1.124 -0.537 -1.873 1.367 D 196 194 3 197 3 0 0 19 38 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 17 - A - - - ML 198 197 3 200 3 1 1 19 37 -8.157 -0.018 -6.811 1.791 -2.763 -2.356 -2.345 D 199 197 3 200 3 0 0 18 37 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 18 - u - - - ML 201 200 3 203 3 1 1 17 36 -8.157 -0.018 -6.811 -0.549 -0.444 -0.729 0.984 D 202 200 3 203 3 0 0 17 36 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 19 - U - - - ML 204 203 3 206 3 1 1 16 35 -8.157 -0.018 -6.811 -0.829 -1.099 -0.942 1.292 D 205 203 3 206 3 0 0 16 34 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 20 - U - - - ML 207 206 3 209 3 1 1 15 33 -8.157 -0.018 -6.811 -1.849 -1.783 -2.599 1.708 D 208 206 3 209 3 0 0 15 33 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 21 - U - - - ML 210 209 3 212 3 1 1 13 31 -8.157 -0.018 -6.811 -1.849 -1.783 -2.599 1.708 D 211 209 3 212 3 0 0 13 32 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 22 - U - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 -1.849 -1.783 -2.599 1.708 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SNORD56 ACC RF00275 DESC Small nucleolar RNA SNORD56 LENG 71 MAXL 155 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:29:43 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 7 EFFN 2.778809 CKSUM 2827911804 STATS LOCAL MSV -8.6904 0.71879 STATS LOCAL VITERBI -8.8839 0.71879 STATS LOCAL FORWARD -3.4419 0.71879 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29707 1.57649 1.47053 1.23730 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 0.00000 * 1 3.08921 0.15843 3.66393 2.58559 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 2 2.98059 1.05881 2.78057 0.61551 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 3 0.50021 2.90527 1.29888 2.71771 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 4 1.83529 0.80057 2.04622 1.33890 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 5 0.42597 2.43870 2.44980 1.75284 5 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 6 0.38624 2.70456 1.83390 2.36760 6 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 7 1.43238 1.65424 1.78953 0.90886 7 u - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 8 1.93434 2.99299 0.29021 2.86057 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 9 0.26809 3.02219 2.01178 2.94279 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 10 2.27616 1.28619 2.12344 0.69039 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 11 1.47607 2.59495 0.49507 2.43851 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 12 1.47733 2.31092 0.74708 1.61527 12 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 13 2.46670 0.37702 3.05968 1.70194 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 14 0.12486 3.43988 3.14471 3.16465 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 15 0.12486 3.43988 3.14471 3.16465 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 16 2.24487 1.77872 2.76607 0.41204 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 17 0.12486 3.43988 3.14471 3.16465 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 18 1.80620 1.70532 1.90124 0.68394 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 19 2.02762 2.20785 2.06658 0.45919 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 20 2.79977 2.73184 3.32414 0.17665 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 21 2.79977 2.73184 3.32414 0.17665 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 22 2.79977 2.73184 3.32414 0.17665 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 23 2.67855 0.49333 2.40331 1.46824 23 C - - > 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 24 0.98710 2.29279 0.91474 2.07352 24 g - - > 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 25 3.17471 2.33056 2.83544 0.22032 25 U - - > 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 26 3.10174 0.27121 2.81918 2.01804 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 27 0.65096 1.86857 1.80249 1.83745 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 28 0.38828 2.70216 1.82797 2.36468 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 29 3.08921 0.15843 3.66393 2.58559 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 30 0.12486 3.43988 3.14471 3.16465 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 31 2.90364 3.80776 0.11767 3.38181 31 G - - - 1.38629 1.38629 1.38629 1.38629 0.22795 4.04843 1.67995 1.46634 0.26236 1.09861 0.40547 32 2.64894 0.24593 3.22158 2.23118 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.04290 3.86339 3.86339 1.46634 0.26236 0.88827 0.52995 33 0.15432 3.24301 2.96672 2.94725 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.03934 3.94822 3.94822 1.46634 0.26236 2.13589 0.12572 34 2.70415 3.58255 0.14762 3.15805 34 G - - - 1.38629 1.38629 1.38629 1.38629 0.03934 3.94822 3.94822 1.46634 0.26236 0.26955 1.44275 35 2.23795 1.76245 2.75959 0.41797 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 36 2.79977 2.73184 3.32414 0.17665 36 U - - - 1.38629 1.38629 1.38629 1.38629 0.14348 2.15235 4.04843 0.27725 1.41824 1.09861 0.40547 37 1.56223 0.80581 2.42055 1.36755 38 c - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 38 0.12486 3.43988 3.14471 3.16465 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 39 3.08921 0.15843 3.66393 2.58559 40 C - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 40 3.08921 0.15843 3.66393 2.58559 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 41 2.26676 1.82916 2.78671 0.39426 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 42 0.42224 1.98838 2.44671 2.11258 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 43 1.19389 2.22584 0.95996 1.57952 44 g - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 44 1.71215 2.20778 2.55293 0.45930 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 45 1.67911 2.93977 0.38243 2.54616 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 46 0.12486 3.43988 3.14471 3.16465 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 47 1.70238 2.95512 0.37324 2.56160 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 48 1.71215 2.20778 2.55293 0.45930 49 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 49 2.90364 3.80776 0.11767 3.38181 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 50 2.79977 2.73184 3.32414 0.17665 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 51 2.09276 1.35123 2.63026 0.60574 52 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 52 2.90364 3.80776 0.11767 3.38181 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 53 0.42345 2.44257 2.45271 1.75900 54 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 54 1.76227 1.19401 1.97347 0.95097 55 u - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 55 0.38828 2.70216 1.82797 2.36468 56 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 56 3.08921 0.15843 3.66393 2.58559 57 C - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 57 2.13124 1.48109 2.66269 0.53758 58 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 58 1.86124 1.78633 1.99129 0.61540 59 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 59 2.79977 2.73184 3.32414 0.17665 60 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 60 2.12832 2.73764 0.39738 1.93680 61 G - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 61 2.12832 2.73764 0.39738 1.93680 62 G - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 62 2.90364 3.80776 0.11767 3.38181 63 G - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 63 2.79977 2.73184 3.32414 0.17665 64 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 64 3.08921 0.15843 3.66393 2.58559 65 C - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 65 2.79977 2.73184 3.32414 0.17665 66 U - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 66 2.90364 3.80776 0.11767 3.38181 67 G - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 67 0.12486 3.43988 3.14471 3.16465 68 A - - - 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 68 1.79324 2.21278 0.52469 2.02157 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 69 2.93535 1.91080 2.70410 0.31198 70 U - - > 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 70 2.11069 2.94133 0.27215 2.74406 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.03552 4.04843 4.04843 1.46634 0.26236 1.09861 0.40547 71 0.39397 2.69561 1.81161 2.35668 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.01792 4.03083 * 1.46634 0.26236 0.00000 * //