INFERNAL1/a [1.1.4 | Dec 2020] NAME SNORD52 ACC RF00276 DESC Small nucleolar RNA SNORD52 STATES 205 NODES 66 CLEN 67 W 85 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:29:46 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 3.627930 CKSUM 3841553922 NULL 0.000 0.000 0.000 0.000 GA 45.00 TC 46.30 NC 44.10 EFP7GF -11.4397 0.71883 ECMLC 0.67285 -6.09222 2.60714 1600000 418083 0.002870 ECMGC 0.38335 -18.44640 -3.77558 1600000 110799 0.003610 ECMLI 0.63129 -5.31554 3.66817 1600000 348514 0.003443 ECMGI 0.41941 -13.37873 -0.64337 1600000 83518 0.004789 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 85 106 -9.351 -9.290 -0.018 -8.067 -8.347 -8.742 IL 1 1 2 1 6 1 24 87 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 25 86 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 72 G C - - MP 3 2 3 7 6 2 27 85 106 -9.351 -9.290 -0.018 -8.067 -8.347 -8.742 -4.099 -2.948 -4.032 0.604 -4.208 -4.528 0.365 -4.315 -4.109 3.223 -4.456 -0.633 1.136 -3.959 -1.659 -2.952 ML 4 2 3 7 6 1 22 84 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 21 83 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 17 81 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 24 85 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 24 84 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 71 g u - - MP 9 8 6 13 6 2 25 83 104 -9.351 -9.290 -0.037 -5.891 -8.347 -8.742 -4.005 -2.748 -4.106 1.536 -5.153 -5.330 -0.621 -4.330 -3.931 2.249 -4.422 2.657 -0.844 -4.494 -2.561 -2.878 ML 10 8 6 13 6 1 21 82 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 19 82 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 17 80 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 23 83 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 22 82 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 70 G C - - MP 15 14 6 19 4 2 23 81 102 -7.476 -7.683 -0.037 -6.097 -4.111 -2.812 -4.042 0.717 -4.643 -4.488 0.669 -4.498 -4.146 3.321 -4.471 0.004 -0.272 -3.893 -1.971 -2.979 ML 16 14 6 19 4 1 20 81 102 -3.965 -4.147 -0.428 -2.876 0.186 -0.689 0.440 -0.177 MR 17 14 6 19 4 1 18 81 101 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 18 14 6 19 4 0 16 80 100 -4.568 -4.250 -2.265 -0.520 IL 19 19 5 19 4 1 22 82 103 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 20 20 6 20 3 1 21 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 21 20 6 23 3 1 22 79 99 -8.498 -0.014 -7.152 1.756 -2.747 -1.821 -2.386 D 22 20 6 23 3 0 16 77 98 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 20 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 24 23 3 26 3 1 21 78 98 -8.498 -0.014 -7.152 1.501 -2.175 -0.631 -1.722 D 25 23 3 26 3 0 15 76 97 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 20 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 27 26 3 29 3 1 20 77 97 -8.498 -0.014 -7.152 -2.501 -2.329 -3.271 1.816 D 28 26 3 29 3 0 14 75 96 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 19 78 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 30 29 3 32 3 1 19 76 96 -8.498 -0.014 -7.152 -2.654 -4.009 1.881 -3.382 D 31 29 3 32 3 0 13 74 95 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 18 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 33 32 3 35 3 1 19 75 95 -8.498 -0.014 -7.152 1.873 -3.441 -2.974 -3.093 D 34 32 3 35 3 0 12 73 94 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 36 35 3 38 3 1 18 74 94 -8.498 -0.014 -7.152 -2.501 -2.329 -3.271 1.816 D 37 35 3 38 3 0 11 72 93 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 39 38 3 41 3 1 17 73 93 -8.498 -0.014 -7.152 -2.654 -4.009 1.881 -3.382 D 40 38 3 41 3 0 11 71 92 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 16 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 42 41 3 44 3 1 16 72 92 -8.498 -0.014 -7.152 1.873 -3.441 -2.974 -3.093 D 43 41 3 44 3 0 10 70 91 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 15 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 45 44 3 47 3 1 16 71 91 -8.498 -0.014 -7.152 -1.020 -1.402 -1.536 1.477 D 46 44 3 47 3 0 9 69 90 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 48 47 3 50 3 1 15 70 90 -4.824 -0.062 -7.152 -1.935 -1.468 -2.682 1.688 D 49 47 3 50 3 0 8 68 88 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 13 71 91 -1.592 -0.696 -4.292 0.000 0.000 0.000 0.000 [ MATL 14 ] 15 - U - - - ML 51 50 3 53 3 1 14 68 89 -8.498 -0.014 -7.152 -1.484 -0.518 -2.247 1.451 D 52 50 3 53 3 0 8 67 87 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 13 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 16 - C - - - ML 54 53 3 56 3 1 13 67 88 -8.498 -0.014 -7.152 -1.532 1.315 -2.416 -0.030 D 55 53 3 56 3 0 7 66 86 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 12 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - a - - - ML 57 56 3 59 3 1 13 66 87 -8.498 -0.014 -7.152 0.635 -1.035 -0.644 0.400 D 58 56 3 59 3 0 6 65 85 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 11 68 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 18 - C - - - ML 60 59 3 62 3 1 12 65 86 -8.498 -0.014 -7.152 -1.011 1.318 -2.168 -0.345 D 61 59 3 62 3 0 5 64 84 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 10 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 19 - A - - - ML 63 62 3 65 3 1 11 64 85 -8.498 -0.014 -7.152 1.873 -3.441 -2.974 -3.093 D 64 62 3 65 3 0 5 63 83 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 10 66 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 20 - G - - - ML 66 65 3 68 3 1 11 63 84 -8.498 -0.014 -7.152 -2.654 -4.009 1.881 -3.382 D 67 65 3 68 3 0 4 62 82 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 9 65 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 21 - A - - - ML 69 68 3 71 3 1 10 62 83 -8.498 -0.014 -7.152 1.873 -3.441 -2.974 -3.093 D 70 68 3 71 3 0 4 61 81 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 8 64 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 22 - C - - - ML 72 71 3 74 3 1 9 61 81 -8.498 -0.014 -7.152 -3.024 1.844 -3.828 -2.202 D 73 71 3 74 3 0 3 60 80 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 7 63 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 23 - U - - - ML 75 74 3 77 3 1 9 60 80 -8.498 -0.014 -7.152 -2.501 -2.329 -3.271 1.816 D 76 74 3 77 3 0 3 59 79 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - A - - - ML 78 77 3 80 3 1 8 59 79 -8.498 -0.014 -7.152 1.873 -3.441 -2.974 -3.093 D 79 77 3 80 3 0 2 58 78 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - G - - - ML 81 80 3 83 3 1 7 58 78 -8.498 -0.014 -7.152 -1.891 -2.963 1.736 -1.889 D 82 80 3 83 3 0 1 57 77 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 6 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - A - - - ML 84 83 3 86 3 1 7 57 77 -8.498 -0.014 -7.152 1.873 -3.441 -2.974 -3.093 D 85 83 3 86 3 0 1 56 76 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 5 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 87 86 3 89 3 1 6 56 76 -8.498 -0.014 -7.152 -2.654 -4.009 1.881 -3.382 D 88 86 3 89 3 0 0 55 75 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 5 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - U - - - ML 90 89 3 92 3 1 6 55 75 -8.498 -0.014 -7.152 -2.501 -2.329 -3.271 1.816 D 91 89 3 92 3 0 0 54 74 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 4 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 93 92 3 95 3 1 5 54 74 -8.498 -0.014 -7.152 -3.024 1.844 -3.828 -2.202 D 94 92 3 95 3 0 0 53 73 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 3 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - U - - - ML 96 95 3 98 3 1 5 53 73 -8.498 -0.014 -7.152 -1.474 -1.567 -1.700 1.582 D 97 95 3 98 3 0 0 51 72 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 3 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 99 98 3 101 3 1 4 52 72 -8.498 -0.014 -7.152 -3.024 1.844 -3.828 -2.202 D 100 98 3 101 3 0 0 50 71 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - U - - - ML 102 101 3 104 3 1 3 51 71 -8.498 -0.014 -7.152 -1.951 -1.497 -2.699 1.693 D 103 101 3 104 3 0 0 49 70 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 105 104 3 107 3 1 2 50 70 -8.498 -0.014 -7.152 -2.654 -4.009 1.881 -3.382 D 106 104 3 107 3 0 0 48 69 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 108 107 3 110 3 1 1 49 69 -8.498 -0.061 -4.705 1.873 -3.441 -2.974 -3.093 D 109 107 3 110 3 0 0 47 68 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - u - - - ML 111 110 3 113 3 1 2 48 68 -8.452 -0.015 -7.106 -0.261 0.373 -1.126 0.498 D 112 110 3 113 3 0 0 46 66 -6.679 -2.192 -0.374 IL 113 113 3 113 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - a - - - ML 114 113 3 116 3 1 2 47 67 -8.452 -0.015 -7.106 0.658 -1.103 0.351 -0.553 D 115 113 3 116 3 0 0 45 66 -6.679 -0.959 -1.071 IL 116 116 3 116 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - c - - - ML 117 116 3 119 3 1 2 46 66 -4.922 -0.059 -7.152 -0.122 0.996 -1.724 -0.351 D 118 116 3 119 3 0 0 44 64 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 47 67 -1.581 -0.703 -4.281 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - U - - - ML 120 119 3 122 3 1 1 45 65 -8.498 -0.014 -7.152 -1.634 -0.861 -2.387 1.554 D 121 119 3 122 3 0 0 43 63 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 46 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - G - - - ML 123 122 3 125 3 1 1 44 64 -8.498 -0.014 -7.152 -0.224 -1.067 1.127 -1.054 D 124 122 3 125 3 0 0 42 62 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 45 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - g - - - ML 126 125 3 128 3 1 1 43 62 -8.498 -0.014 -7.152 -0.285 -0.757 0.958 -0.632 D 127 125 3 128 3 0 0 41 61 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 44 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 42 - U - - - ML 129 128 3 131 3 1 1 41 61 -8.498 -0.014 -7.152 -0.653 -0.171 -1.351 1.059 D 130 128 3 131 3 0 0 40 60 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 43 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - c - - - ML 132 131 3 134 3 1 1 40 60 -8.498 -0.014 -7.152 -0.224 0.374 -0.792 0.346 D 133 131 3 134 3 0 0 39 59 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 42 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - u - - - ML 135 134 3 137 3 1 1 39 59 -8.498 -0.014 -7.152 -0.092 0.375 -1.407 0.473 D 136 134 3 137 3 0 0 38 58 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 41 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - U - - - ML 138 137 3 140 3 1 1 38 58 -8.498 -0.014 -7.152 -0.429 -1.168 -0.943 1.197 D 139 137 3 140 3 0 0 37 57 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - G - - - ML 141 140 3 143 3 1 1 37 57 -8.498 -0.014 -7.152 -0.886 -2.791 1.634 -2.245 D 142 140 3 143 3 0 0 36 56 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - A - - - ML 144 143 3 146 3 1 1 36 56 -8.498 -0.014 -7.152 1.564 -1.936 -1.932 -0.945 D 145 143 3 146 3 0 0 35 55 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - u - - - ML 147 146 3 149 3 1 1 35 55 -8.498 -0.014 -7.152 -0.047 -1.062 -0.798 0.984 D 148 146 3 149 3 0 0 34 54 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - G - - - ML 150 149 3 152 3 1 1 34 54 -8.498 -0.014 -7.152 -0.886 -2.791 1.634 -2.245 D 151 149 3 152 3 0 0 33 53 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - U - - - ML 153 152 3 155 3 1 1 33 53 -8.498 -0.014 -7.152 -1.119 -0.740 -1.477 1.368 D 154 152 3 155 3 0 0 32 52 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 35 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - C - - - ML 156 155 3 158 3 1 1 32 52 -8.498 -0.014 -7.152 -1.099 1.205 -1.322 -0.272 D 157 155 3 158 3 0 0 31 51 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 34 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - A - - - ML 159 158 3 161 3 1 1 31 51 -3.042 -0.198 -7.152 1.169 -1.366 -1.475 0.006 D 160 158 3 161 3 0 0 29 49 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 31 51 -1.926 -0.522 -4.626 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - A - - - ML 162 161 3 164 3 1 1 30 49 -8.498 -0.072 -4.449 1.273 -1.432 -1.150 -0.391 D 163 161 3 164 3 0 0 28 48 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - a - - - ML 165 164 3 167 3 1 1 29 48 -8.441 -0.015 -7.095 0.919 -0.028 -1.359 -0.437 D 166 164 3 167 3 0 0 27 47 -6.777 -2.290 -0.347 IL 167 167 3 167 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - a - - - ML 168 167 3 170 3 1 1 28 47 -8.441 -0.015 -7.095 0.927 -0.914 -1.269 0.205 D 169 167 3 170 3 0 0 26 46 -6.777 -2.290 -0.347 IL 170 170 3 170 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 57 - u - - - ML 171 170 3 173 3 1 1 27 46 -8.441 -0.015 -7.095 -0.087 -0.114 -1.041 0.721 D 172 170 3 173 3 0 0 25 44 -6.777 -2.290 -0.347 IL 173 173 3 173 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 58 - U - - - ML 174 173 3 176 3 1 1 26 45 -3.200 -0.178 -7.095 -0.536 -1.217 -1.360 1.316 D 175 173 3 176 3 0 0 22 42 -6.777 -0.873 -1.169 IL 176 176 3 176 3 1 1 27 47 -1.354 -0.802 -4.820 0.000 0.000 0.000 0.000 [ MATL 56 ] 61 - a - - - ML 177 176 3 179 3 1 1 22 41 -8.498 -0.014 -7.152 0.943 -1.157 -0.845 0.101 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 62 - a - - - ML 180 179 3 182 3 1 1 21 39 -8.498 -0.014 -7.152 0.799 -0.757 -0.898 0.179 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 63 - g - - - ML 183 182 3 185 3 1 1 20 38 -8.498 -0.014 -7.152 -0.201 -1.292 0.770 0.023 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - U - - - ML 186 185 3 188 3 1 1 18 37 -8.498 -0.152 -3.362 -1.019 -0.246 -1.545 1.214 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - U - - - ML 189 188 3 191 3 1 1 17 36 -8.362 -0.016 -7.016 -0.607 -1.311 -1.846 1.413 D 190 188 3 191 3 0 0 16 35 -7.317 -0.540 -1.708 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - C - - - ML 192 191 3 194 3 1 1 16 34 -8.498 -0.014 -7.152 -3.024 1.844 -3.828 -2.202 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - U - - - ML 195 194 3 197 3 1 1 14 33 -8.498 -0.014 -7.152 -2.501 -2.329 -3.271 1.816 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 68 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.498 -0.014 -7.152 -2.654 -4.009 1.881 -3.382 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 69 - A - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 1.873 -3.441 -2.974 -3.093 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SNORD52 ACC RF00276 DESC Small nucleolar RNA SNORD52 LENG 67 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:29:46 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 20 EFFN 3.959961 CKSUM 3841553922 STATS LOCAL MSV -7.4605 0.71883 STATS LOCAL VITERBI -8.7558 0.71883 STATS LOCAL FORWARD -3.3708 0.71883 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27956 1.63819 1.46201 1.21828 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 0.00000 * 1 2.23701 2.47436 0.44529 1.78162 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 2 1.62666 3.14180 0.34604 2.94265 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 3 2.12916 2.24049 0.36227 2.54390 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 4 0.15718 3.37385 2.69168 3.13670 4 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 5 0.33107 2.96785 1.82794 2.66378 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 6 3.22947 3.09309 3.76520 0.11440 6 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 7 3.33113 4.28085 0.07372 3.84032 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 8 0.07818 3.88363 3.55072 3.65268 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 9 3.22947 3.09309 3.76520 0.11440 9 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 10 3.33113 4.28085 0.07372 3.84032 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 11 0.07818 3.88363 3.55072 3.65268 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 12 2.14233 2.41497 2.48827 0.34221 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 13 2.80997 2.44900 3.32853 0.20142 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06358 3.03407 4.30673 0.48910 0.94979 1.09861 0.40547 14 2.48801 1.75660 3.01793 0.36328 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 15 2.52056 0.45456 3.14132 1.42033 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 16 0.93780 2.13119 1.84062 1.10535 17 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 17 2.12911 0.45133 2.95643 1.64884 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 18 0.07818 3.88363 3.55072 3.65268 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 19 3.33113 4.28085 0.07372 3.84032 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 20 0.07818 3.88363 3.55072 3.65268 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 21 3.61103 0.09580 4.15788 3.02238 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 22 3.22947 3.09309 3.76520 0.11440 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 23 0.07818 3.88363 3.55072 3.65268 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 24 2.77902 3.52694 0.16948 2.74256 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 25 0.07818 3.88363 3.55072 3.65268 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 26 3.33113 4.28085 0.07372 3.84032 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 27 3.22947 3.09309 3.76520 0.11440 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 28 3.61103 0.09580 4.15788 3.02238 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 29 2.48264 2.53603 2.60466 0.27001 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 30 3.61103 0.09580 4.15788 3.02238 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 31 2.82148 2.47022 3.34014 0.19786 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 32 3.33113 4.28085 0.07372 3.84032 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 33 0.07818 3.88363 3.55072 3.65268 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06220 4.30673 3.06127 1.46634 0.26236 1.09861 0.40547 34 1.58072 1.11293 2.18720 1.04030 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02828 4.27281 4.27281 1.46634 0.26236 1.70010 0.20171 35 0.92470 2.17221 1.12953 1.79434 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02828 4.27281 4.27281 1.46634 0.26236 0.45465 1.00696 36 1.48195 0.67307 2.63581 1.65544 37 C - - _ 1.38629 1.38629 1.38629 1.38629 0.06095 3.08665 4.30673 0.51251 0.91378 1.09861 0.40547 37 2.59566 2.00592 3.11837 0.29218 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 38 1.56270 2.14198 0.58162 2.17141 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 39 1.60723 1.91989 0.69863 1.86004 41 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 40 1.86792 1.50351 2.35063 0.63885 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 41 1.55517 1.11244 1.94364 1.14914 43 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 42 1.45852 1.11128 2.39661 1.05769 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 43 1.70404 2.23716 2.05400 0.53945 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 44 2.03224 3.39927 0.23948 3.02574 46 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 45 0.28609 2.78817 2.79134 2.07204 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 46 1.42493 2.15527 1.94861 0.69089 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 47 2.03224 3.39927 0.23948 3.02574 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 48 2.21909 1.92041 2.44341 0.41873 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 49 2.20587 0.52745 2.32810 1.59822 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 50 0.55948 2.37675 2.45474 1.38727 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.16636 1.96765 4.30673 0.18279 1.78940 1.09861 0.40547 51 0.48821 2.42011 2.21168 1.67213 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07065 4.30673 2.90523 1.46634 0.26236 1.09861 0.40547 52 0.73429 1.39739 2.36981 1.71806 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02852 4.26459 4.26459 1.46634 0.26236 1.80192 0.18030 53 0.72950 2.04180 2.29907 1.24582 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02852 4.26459 4.26459 1.46634 0.26236 1.80192 0.18030 54 1.45269 1.46173 2.12270 0.88064 57 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02852 4.26459 4.26459 1.46634 0.26236 1.80192 0.18030 55 1.78278 2.27672 2.36154 0.45423 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15220 2.06258 4.26459 0.65832 0.72923 0.40042 1.10877 56 0.71985 2.22007 1.98779 1.31835 61 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 57 0.82187 1.92550 2.02430 1.26406 62 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 58 1.54219 2.31908 0.83196 1.37622 63 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 59 2.14443 1.55883 2.49506 0.52765 64 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13126 4.30673 2.21156 1.46634 0.26236 1.09861 0.40547 60 1.83536 2.34913 2.72766 0.38622 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03027 4.20574 4.20574 1.46634 0.26236 0.22002 1.62204 61 3.61103 0.09580 4.15788 3.02238 66 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 62 3.22947 3.09309 3.76520 0.11440 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 63 3.33113 4.28085 0.07372 3.84032 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 64 0.07818 3.88363 3.55072 3.65268 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05632 4.30673 3.18729 1.46634 0.26236 1.09861 0.40547 65 2.81747 0.43497 2.12213 1.75341 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.02812 4.27853 4.27853 1.46634 0.26236 0.50255 0.92884 66 3.17139 1.19050 2.93831 0.50911 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.02733 4.30673 4.30673 1.46634 0.26236 1.09861 0.40547 67 1.90620 0.49422 2.29974 1.95882 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.01376 4.29316 * 1.46634 0.26236 0.00000 * //