# STOCKHOLM 1.0
#=GF ID snoZ107_R87
#=GF AC RF00360
#=GF DE Small nucleolar RNA Z107/R87
#=GF AU Moxon SJ; 0000-0003-4644-1816
#=GF GA 50.0
#=GF NC 49.8
#=GF TC 50.2
#=GF SE Moxon SJ
#=GF SS Predicted; RNAfold; Moxon SJ, Daub J, Gardner PP
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 19 -Z 549862.597050 CM SEQDB
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Arabidopsis_thaliana300058;
#=GF RN [1]
#=GF RM 11469857
#=GF RT Identification of 66 box C/D snoRNAs in Arabidopsis thaliana: extensive
#=GF RT gene duplications generated multiple isoforms predicting new ribosomal RNA
#=GF RT 2'-O-methylation sites.
#=GF RA Barneche F, Gaspin C, Guyot R, Echeverria M
#=GF RL J Mol Biol 2001;311:57-73.
#=GF RN [2]
#=GF RM 12007400
#=GF RT Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse
#=GF RT cellular functions.
#=GF RA Kiss T
#=GF RL Cell 2002;109:145-148.
#=GF RN [3]
#=GF RM 12736310
#=GF RT The high diversity of snoRNAs in plants: identification and comparative
#=GF RT study of 120 snoRNA genes from Oryza sativa.
#=GF RA Chen CL, Liang D, Zhou H, Zhuo M, Chen YQ, Qu LH
#=GF RL Nucleic Acids Res 2003;31:2601-2613.
#=GF CC Z107 and R87 are members of the C/D class of snoRNA which contain the C
#=GF CC (UGAUGA) and D (CUGA) box motifs. Most of the members of the box C/D
#=GF CC family function in directing site-specific 2'-O-methylation of substrate
#=GF CC RNA
#=GF WK Small_nucleolar_RNA_Z107/R87
#=GF SQ 9

AJ298135.1/1-115        GAGAAAUCGUGGUGAUGACUUGGAAAUAUU-CAAGCUCAACAGACCGUAAUGUAGGAUUU--U--------------UCCUAGUGGAAAGUCUUGCGUGUGUCGAUAAUCCCGCUGAACUGAGCGAUUUCUC
AY013245.2/61987-62105  ----GAUGGCAGUGACGACUUGGUAAUAUU-CAAGCUCAACAGACCAAAUCACAGGUCUUCCUCUCUGGAUCCAC--UCCUCUGGGAUUGAUUUG--UAUGCCGAUUUUCCCGCUGAACCGAGCCAUC----
AY013245.2/57789-57907  ----GAUGGCAGUGACGACUUGGUAAUAUU-CAAGCUCAACAGACCAAAUCACAGGUCUU--UCUCUCUGGAUCCACUCCUCUGGGAUUGAUUUG--UAUGCCGAUUUUCCCGCUGAACCGAGCCAUC----
AJ489952.1/1-119        ----GAUGGCAGUGACGACUUGGUAAUAUU-CAAGCUCAACAGACCAAAUCACAGGUCUUCCUCUCUGGAUCUAC--UCCUCUGGGAUUGAUUUG--UAUGCCGAUUUUCCCGCUGAACCGAGCCAUC----
AJ307928.1/3-121        ----GAUGGCAGUGACGACCUGGUAAUAUU-CAAGCUCAACAGACCAAAUCACAGGUCUU--UCUCUCUGGAUCUACUCCUCAGGGAUUGAUUUG--UAUGCCGAUUUUUCCGCUGAACCGAGCCAUC----
AJ307662.1/4013-4128    ----GAUGGCAGUGACGACCUGGUAAUAUU-CAAGCUCAACAGACCAAAUCACAGGUCUU--UCUCUCUGGAUC---UACUCAGGGAUUGAUUUG--UAUGCCGAUUUUUCCGCUGAACCGAGCCAUC----
AC135465.23/41412-41522 ----GAUCACGAUGAUGACUCCAUAAAAUU-CAAGCUCAACAGACCGCAGUGCAGUGCUU--UCUU-CU--CU-----UUCGAGAGAUUGCUUUG-CGUGUC-GAUAACCCCGCUGAACUGAGUGAUC----
AJ489954.1/1-104        ------UGGCUGUGACGACUAGGUGAAAUU-CAAGCUCAACAGACCAAAUCACAGGUCUC--UCUCCAAGGCCUU-UGGAGAUGGGAUCUGUAUGCCGA-----GU--UUCCGCUC-----AGCCG------
AF318011.1/1-106        -------GGCAGUGAUGACUCGG--AAAUUUCAAGCUCAACAGACCGGAAUUAGGCGUUU--CUUCCAA----UU-UAUUGGUUGAGUCGUUUCUG-UGU--CGAUAACCCCGCUGAUCUGAGCC-------
#=GC SS_cons            ....<<<<<<____________________._____________________________.._____________..__________________.._________________________>>>>>>....
#=GC RF                 ....GAugGCaGUGAuGACUuGGUAAuAUU.CAAGCUCAACAGACCaaAuuacAGgucUU..UCUCuauggcuuu..uccuaugGGAUuGaUUUG..UaUGcCGAUaaUcCCGCUGAACuGAGCcaUC....
//