INFERNAL1/a [1.1 | October 2013] NAME UnaL2 ACC RF00436 DESC UnaL2 LINE 3' element DESC UnaL2 LINE 3' element STATES 166 NODES 46 CLEN 54 W 69 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:38:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 30 EFFN 5.086670 CKSUM 3902131467 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 55.00 NC 54.90 EFP7GF -12.9148 0.71929 ECMLC 0.59041 -5.58303 4.21355 1600000 390077 0.003076 ECMGC 0.45882 -13.50490 -0.92208 1600000 128636 0.003110 ECMLI 0.59732 -3.43387 5.02104 1600000 187283 0.006407 ECMGI 0.47470 -10.93570 0.78939 1600000 104546 0.003826 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 69 88 -7.871 -8.078 -0.028 -6.493 IL 1 1 2 1 4 1 16 73 93 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 16 69 88 -8.838 -0.011 -7.492 0.365 -1.164 -0.616 0.690 D 4 2 3 5 3 0 10 68 87 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 15 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 15 68 87 -8.838 -0.011 -7.492 0.217 -1.118 0.595 -0.206 D 7 5 3 8 3 0 9 67 86 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 14 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 14 67 86 -8.838 -0.011 -7.492 -0.673 0.711 -0.733 0.182 D 10 8 3 11 3 0 8 66 85 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 13 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 14 66 85 -8.838 -0.011 -7.492 0.800 -1.240 -0.665 0.269 D 13 11 3 14 3 0 7 65 84 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 12 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - c - - - ML 15 14 3 17 3 1 13 65 84 -8.838 -0.011 -7.492 0.024 0.513 -1.589 0.291 D 16 14 3 17 3 0 6 64 83 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 11 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 12 64 83 -8.838 -0.011 -7.492 0.797 -1.080 -0.202 -0.120 D 19 17 3 20 3 0 5 63 82 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 11 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 11 63 82 -8.838 -0.011 -7.492 -0.101 1.129 -2.076 -0.636 D 22 20 3 23 3 0 4 62 81 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 10 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 10 62 81 -8.838 -0.011 -7.492 1.316 -0.513 -1.820 -0.926 D 25 23 3 26 3 0 3 61 80 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 9 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - u - - - ML 27 26 3 29 3 1 9 61 80 -8.838 -0.011 -7.492 0.061 -0.468 -0.249 0.477 D 28 26 3 29 3 0 3 60 79 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 8 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - g - - - ML 30 29 3 32 3 1 8 60 79 -8.838 -0.011 -7.492 0.101 -1.354 0.571 0.072 D 31 29 3 32 3 0 2 59 78 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 7 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - u - - - ML 33 32 3 35 3 1 8 59 78 -8.838 -0.011 -7.492 0.571 -0.845 -1.418 0.663 D 34 32 3 35 3 0 1 58 77 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 6 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - u - - - ML 36 35 3 38 3 1 7 58 77 -9.185 -0.010 -7.503 -0.155 0.212 -0.370 0.226 D 37 35 3 38 3 0 1 57 76 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 5 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 57 - a - - MR 39 38 3 41 3 1 6 57 76 -9.185 -0.010 -7.503 0.891 -1.280 -0.964 0.288 D 40 38 3 41 3 0 0 55 74 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 4 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 56 - u - - MR 42 41 3 44 3 1 5 56 75 -9.185 -0.010 -7.503 0.632 -1.224 -1.100 0.638 D 43 41 3 44 3 0 0 54 73 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 3 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - A - - MR 45 44 3 47 3 1 5 55 74 -9.185 -0.010 -7.503 1.011 -1.456 -1.609 0.370 D 46 44 3 47 3 0 0 53 72 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 3 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - U - - MR 48 47 3 50 3 1 4 54 73 -9.185 -0.010 -7.503 -1.095 -1.521 -0.141 1.187 D 49 47 3 50 3 0 0 52 71 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 2 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - u - - MR 51 50 3 53 3 1 4 53 72 -9.185 -0.010 -7.503 0.581 -1.227 -1.149 0.702 D 52 50 3 53 3 0 0 51 70 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 2 54 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 52 - C - - MR 54 53 3 56 3 1 3 52 71 -9.185 -0.010 -7.503 -1.976 1.764 -3.453 -1.953 D 55 53 3 56 3 0 0 50 69 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 51 - g - - MR 57 56 3 59 3 1 3 51 70 -9.185 -0.010 -7.503 0.148 -0.507 0.721 -0.890 D 58 56 3 59 3 0 0 49 68 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 50 - G - - MR 60 59 3 62 3 1 2 50 69 -9.185 -0.010 -7.503 -1.409 -2.921 1.697 -2.001 D 61 59 3 62 3 0 0 48 67 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 49 - U - - MR 63 62 3 65 3 1 2 49 68 -9.185 -0.010 -7.503 -3.114 -2.853 -3.896 1.879 D 64 62 3 65 3 0 0 47 66 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 48 - A - - MR 66 65 3 68 3 1 2 48 67 -9.185 -0.010 -7.503 1.919 -4.068 -3.557 -3.770 D 67 65 3 68 3 0 0 46 65 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 47 - A - - MR 69 68 3 71 5 1 1 47 66 -7.881 -0.022 -7.697 -7.909 -8.801 1.919 -4.068 -3.557 -3.770 D 70 68 3 71 5 0 0 46 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 13 46 U A - - MP 72 71 3 76 4 2 2 46 65 -7.731 -8.977 -0.044 -5.430 -6.580 -6.434 -6.140 -2.658 -4.710 -6.487 -0.397 -5.528 -6.129 -2.631 -6.400 -4.305 3.856 -6.584 -2.322 -4.491 ML 73 71 3 76 4 1 1 45 64 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 4 1 1 45 64 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 75 71 3 76 4 0 0 43 62 -12.737 -14.007 -2.036 -0.404 IL 76 76 5 76 4 1 1 45 64 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 45 - U - - MR 78 77 6 80 5 1 1 44 63 -7.881 -0.022 -7.697 -7.909 -8.801 -1.619 -1.481 -1.547 1.573 D 79 77 6 80 5 0 0 42 61 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 14 44 G C - - MP 81 80 3 85 6 2 2 43 62 -5.126 -9.471 -0.056 -8.248 -8.528 -8.923 -6.373 -3.906 -6.856 -0.980 -7.452 -5.296 -2.417 -7.057 -5.257 3.868 -5.511 -1.706 -2.778 -5.490 -4.582 -5.712 ML 82 80 3 85 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 39 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 43 62 -1.706 -3.624 -0.856 -5.279 -6.055 -5.716 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 43 U G - - MP 87 86 6 91 6 2 2 40 59 -9.532 -9.471 -0.016 -8.248 -8.528 -8.923 -5.591 -5.571 -5.009 -1.821 -3.465 -5.251 0.829 -4.326 -5.069 -1.848 -5.241 -3.567 -0.166 -5.548 3.621 -3.891 ML 88 86 6 91 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 18 42 A U - - MP 93 92 6 97 4 2 2 38 57 -4.603 -8.078 -0.083 -6.493 -5.453 -4.200 -5.164 3.841 -6.554 -7.852 -2.163 -5.102 -5.221 -0.743 -5.835 -1.500 -2.540 -6.656 -4.083 -4.057 ML 94 92 6 97 4 1 1 38 57 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 38 57 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 37 56 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 39 58 -2.071 -2.754 -0.768 -5.240 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - A - - - ML 99 98 6 101 3 1 1 35 54 -8.838 -0.011 -7.492 1.659 -1.698 -2.285 -1.605 D 100 98 6 101 3 0 0 34 53 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 21 - G - - - ML 102 101 3 104 3 1 1 34 53 -8.838 -0.011 -7.492 -2.205 -4.014 1.859 -3.435 D 103 101 3 104 3 0 0 33 52 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 22 - U - - - ML 105 104 3 107 3 1 1 33 52 -9.185 -0.010 -7.503 -1.822 -2.137 -2.937 1.748 D 106 104 3 107 3 0 0 32 51 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 41 - C - - MR 108 107 3 110 3 1 1 32 51 -9.185 -0.010 -7.503 -3.718 1.901 -4.448 -2.814 D 109 107 3 110 3 0 0 31 49 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 33 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 40 - U - - MR 111 110 3 113 5 1 1 31 50 -7.881 -0.022 -7.697 -7.909 -8.801 -3.114 -2.853 -3.896 1.879 D 112 110 3 113 5 0 0 30 48 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 23 39 C G - - MP 114 113 3 118 6 2 2 30 49 -9.532 -9.471 -0.016 -8.248 -8.528 -8.923 -5.506 -5.598 -5.058 -1.777 0.479 -5.351 3.627 -4.484 -5.139 -1.663 -5.324 -3.687 -0.173 -5.495 -1.318 -3.958 ML 115 113 3 118 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 24 38 G C - - MP 120 119 6 124 6 2 2 28 47 -9.532 -9.471 -0.016 -8.248 -8.528 -8.923 -4.535 -2.520 -4.440 0.434 -5.409 -3.450 -0.558 -5.077 -4.530 3.537 -4.782 -0.081 -0.831 -3.202 -2.569 -3.417 ML 121 119 6 124 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 37 C G - - MP 126 125 6 130 6 2 2 26 45 -9.532 -9.471 -0.016 -8.248 -8.528 -8.923 -7.285 -7.363 -6.764 -3.964 -5.598 -4.991 3.955 -7.179 -7.344 -3.870 -4.060 -5.648 -3.021 -7.521 -4.344 -6.335 ML 127 125 6 130 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 26 36 U A - - MP 132 131 6 136 6 2 2 24 43 -9.532 -9.471 -0.016 -8.248 -8.528 -8.923 -6.580 -6.434 -6.140 -2.658 -4.710 -6.487 -0.397 -5.528 -6.129 -2.631 -6.400 -4.305 3.856 -6.584 -2.322 -4.491 ML 133 131 6 136 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 27 35 u a - - MP 138 137 6 142 6 2 2 22 41 -9.532 -9.471 -0.016 -8.248 -8.528 -8.923 -4.825 -4.791 -4.555 -0.882 -3.230 -5.009 2.701 -4.020 -4.559 -0.716 -4.880 -2.698 2.833 -4.891 -0.872 -3.368 ML 139 137 6 142 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 28 34 U A - - MP 144 143 6 148 4 2 2 20 39 -7.871 -8.078 -0.028 -6.493 -6.580 -6.434 -6.140 -2.658 -4.710 -6.487 -0.397 -5.528 -6.129 -2.631 -6.400 -4.305 3.856 -6.584 -2.322 -4.491 ML 145 143 6 148 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 147 143 6 148 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 148 148 5 148 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 149 149 6 149 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - G - - - ML 150 149 6 152 3 1 1 17 35 -8.838 -0.011 -7.492 -3.230 -4.640 1.922 -3.972 D 151 149 6 152 3 0 0 17 35 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - G - - - ML 153 152 3 155 3 1 1 16 34 -8.838 -0.011 -7.492 -3.230 -4.640 1.922 -3.972 D 154 152 3 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - A - - - ML 156 155 3 158 3 1 1 14 33 -8.838 -0.011 -7.492 1.825 -3.267 -2.141 -2.983 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 32 - U - - - ML 159 158 3 161 3 1 1 12 31 -8.838 -0.011 -7.492 -3.114 -2.853 -3.896 1.879 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 33 - A - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 1.919 -4.068 -3.557 -3.770 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [i1.1 | October 2013] NAME UnaL2 ACC RF00436 DESC UnaL2 LINE 3' element DESC UnaL2 LINE 3' element LENG 54 MAXL 125 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:38:24 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 30 EFFN 6.339111 CKSUM 3902131467 STATS LOCAL MSV -7.5402 0.71929 STATS LOCAL VITERBI -7.9162 0.71929 STATS LOCAL FORWARD -4.2883 0.71929 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.23579 1.67999 1.46292 1.23285 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 0.00000 * 1 1.12396 2.28024 1.82680 0.88717 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 2 1.24239 2.22173 0.93614 1.55710 2 g - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 3 1.94008 0.84728 1.90567 1.27652 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 4 0.80622 2.33756 1.86930 1.19513 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 5 1.38102 0.99092 2.60282 1.19278 5 c - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 6 0.81139 2.19335 1.52104 1.48839 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 7 1.47403 0.55340 3.00158 1.92208 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 8 0.43409 1.74185 2.81249 2.14645 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 9 1.35575 1.72394 1.54811 1.04630 9 u - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 10 1.33016 2.42576 0.95156 1.34317 10 g - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 11 0.96890 2.02430 2.46006 0.90885 11 u - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 12 1.52386 1.21119 1.63611 1.23942 12 c - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 13 4.64837 3.31274 4.55533 0.05816 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 14 3.42476 4.40645 0.05917 4.36638 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.07466 2.78494 4.58485 0.80996 0.58856 1.09861 0.40547 15 3.87170 2.27378 3.77462 0.15863 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 16 0.07944 4.33841 3.03798 4.17468 18 A - - < 1.38629 1.38629 1.38629 1.38629 0.05971 3.04170 4.58485 0.38347 1.14412 1.09861 0.40547 17 0.20798 2.62548 3.15224 2.62255 20 A - - - 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 18 3.04167 4.40151 0.08173 3.99198 21 G - - - 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 19 2.77378 3.04224 3.61922 0.14729 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 20 3.92913 0.12612 3.78089 2.57668 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 21 2.39470 3.07739 0.21023 2.95026 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 22 5.23220 0.02429 4.73824 4.61526 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 23 4.61571 3.30842 4.53538 0.05889 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 24 3.38622 0.86419 3.17824 0.68694 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 25 4.60375 3.30681 4.52801 0.05917 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 26 3.87244 4.87528 0.04176 4.38521 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 27 3.87244 4.87528 0.04176 4.38521 30 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 28 0.10206 3.86895 2.96648 3.70263 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 29 3.81987 3.60561 4.36608 0.06379 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 30 0.04208 4.48718 4.11893 4.29123 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 31 0.06797 4.72633 3.13123 4.32876 34 A - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 32 0.73839 3.34396 0.81262 3.14363 35 a - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 33 0.06759 4.73813 3.13352 4.33977 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 34 4.73804 5.10661 0.02044 5.21673 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 35 3.28130 0.25928 2.98081 1.96569 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 36 1.87876 3.93962 0.21944 3.69710 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 37 3.81987 3.60561 4.36608 0.06379 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 38 4.24686 0.05183 4.70896 3.60501 41 C - - - 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 39 4.38871 3.45033 4.15388 0.06172 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 40 2.88607 3.97458 0.10662 3.62856 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 41 4.53683 0.07084 4.31737 3.11569 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 42 2.70528 2.53444 2.51409 0.25760 45 U - - - 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 43 0.06625 4.78201 3.14184 4.38062 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 44 0.04208 4.48718 4.11893 4.29123 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 45 0.04208 4.48718 4.11893 4.29123 48 A - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 46 3.81987 3.60561 4.36608 0.06379 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 47 2.44820 3.56103 0.18896 2.85903 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 48 1.29920 1.73471 0.83797 2.13529 51 g - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 49 2.87798 0.13346 4.01770 2.98195 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 50 0.96256 2.33665 2.24416 0.87846 53 u - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 51 2.32337 2.60236 1.46622 0.51557 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 52 0.64804 2.53343 2.63997 1.12031 55 A - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 53 0.92559 2.33266 2.20510 0.92527 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.02062 4.58485 4.58485 1.46634 0.26236 1.09861 0.40547 54 0.73904 2.37276 2.10130 1.18121 57 a - - : 1.38629 1.38629 1.38629 1.38629 0.01036 4.57460 * 1.46634 0.26236 0.00000 * //