INFERNAL1/a [1.1.4 | Dec 2020] NAME p27_CRE ACC RF00454 DESC p27 cis-regulatory element STATES 186 NODES 51 CLEN 59 W 75 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:39:36 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 1.954102 CKSUM 2914299683 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.70 NC 35.30 EFP7GF -8.7266 0.71937 ECMLC 0.65900 -6.68068 2.71630 1600000 586940 0.002045 ECMGC 0.35804 -18.30160 -3.10241 1600000 92350 0.004331 ECMLI 0.62590 -5.23041 3.95449 1600000 376597 0.003186 ECMGI 0.42061 -12.24526 0.00073 1600000 69028 0.005795 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 75 95 -6.958 -7.165 -0.116 -3.999 IL 1 1 2 1 4 1 25 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 2 24 75 95 -7.917 -0.021 -6.571 -1.626 1.592 -2.446 -1.064 D 4 2 3 5 3 0 19 73 93 -6.618 -2.131 -0.393 IL 5 5 3 5 3 1 24 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 2 23 74 94 -7.917 -0.021 -6.571 -1.626 1.592 -2.446 -1.064 D 7 5 3 8 3 0 19 73 92 -6.618 -1.020 -1.009 IL 8 8 3 8 3 1 23 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 23 73 93 -7.974 -0.020 -6.628 1.723 -2.391 -2.021 -1.935 D 10 8 3 11 3 0 18 71 91 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 22 72 92 -7.974 -0.020 -6.628 -1.764 1.630 -2.589 -1.173 D 13 11 3 14 3 0 17 70 90 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 21 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 21 71 90 -7.974 -0.020 -6.628 -1.764 1.630 -2.589 -1.173 D 16 14 3 17 3 0 17 69 89 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 21 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 20 70 89 -7.974 -0.020 -6.628 -1.503 -1.496 -2.238 1.623 D 19 17 3 20 3 0 16 68 88 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 19 69 88 -7.974 -0.020 -6.628 -1.503 -1.496 -2.238 1.623 D 22 20 3 23 3 0 15 67 87 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 18 68 87 -8.363 -0.019 -6.681 1.723 -2.391 -2.021 -1.935 D 25 23 3 26 3 0 15 66 86 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 18 68 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 60 - G - - MR 27 26 3 29 3 1 18 67 86 -8.363 -0.019 -6.681 -1.601 -2.824 1.728 -2.211 D 28 26 3 29 3 0 13 65 85 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 17 67 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 59 - U - - MR 30 29 3 32 3 1 17 66 85 -8.363 -0.019 -6.681 -1.503 -1.496 -2.238 1.623 D 31 29 3 32 3 0 13 64 84 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 16 66 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 58 - A - - MR 33 32 3 35 3 1 16 65 84 -8.363 -0.019 -6.681 1.723 -2.391 -2.021 -1.935 D 34 32 3 35 3 0 12 63 83 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 16 65 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 57 - A - - MR 36 35 3 38 3 1 15 64 83 -8.363 -0.019 -6.681 1.723 -2.391 -2.021 -1.935 D 37 35 3 38 3 0 12 62 82 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 15 64 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 56 - C - - MR 39 38 3 41 3 1 14 63 82 -8.363 -0.019 -6.681 -1.764 1.630 -2.589 -1.173 D 40 38 3 41 3 0 11 61 81 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 14 63 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 55 - C - - MR 42 41 3 44 3 1 13 62 81 -8.363 -0.019 -6.681 -1.764 1.630 -2.589 -1.173 D 43 41 3 44 3 0 11 60 80 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 13 62 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 54 - A - - MR 45 44 3 47 3 1 12 61 80 -8.363 -0.019 -6.681 1.723 -2.391 -2.021 -1.935 D 46 44 3 47 3 0 10 59 79 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 12 61 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 53 - g - - MR 48 47 3 50 2 1 11 60 79 -8.368 -0.004 0.465 -1.471 0.778 -0.878 D 49 47 3 50 2 0 10 59 78 -4.432 -0.068 IR 50 50 3 50 2 1 11 60 80 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 17 ] - - - - - - B 51 50 3 52 111 0 10 59 78 [ BEGL 18 ] - - - - - - S 52 51 1 53 4 0 0 33 52 -0.044 -6.839 -6.246 -6.886 [ MATP 19 ] 9 28 A U - - MP 53 52 1 57 6 2 2 33 52 -9.111 -9.051 -0.021 -7.827 -8.107 -8.502 -3.812 -2.838 -3.829 3.345 -4.178 -5.242 0.123 -3.870 -3.720 1.056 -4.269 -0.311 -0.294 -4.426 -1.817 -2.662 ML 54 52 1 57 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 1 57 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 1 57 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 10 27 G C - - MP 59 58 6 63 6 2 2 31 50 -3.660 -9.051 -0.139 -7.827 -8.107 -8.502 -4.764 -3.105 -4.865 0.185 -5.264 -4.703 -0.623 -5.110 -4.342 3.644 -4.678 -0.804 -1.008 -4.482 -2.661 -3.742 ML 60 58 6 63 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 31 50 -3.396 -3.659 -0.382 -5.314 -6.090 -5.750 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 12 26 G C - - MP 65 64 6 69 6 2 2 29 48 -9.111 -9.051 -0.021 -7.827 -8.107 -8.502 -3.577 -2.588 -3.610 0.785 -3.978 -1.700 0.262 -4.051 -3.652 3.264 -4.025 0.004 -0.012 -3.462 -1.617 -2.659 ML 66 64 6 69 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 13 25 C G - - MP 71 70 6 75 4 2 2 27 46 -6.958 -7.165 -0.392 -2.167 -4.576 -4.484 -4.261 -0.714 -2.973 -4.670 3.559 -3.786 -4.311 -0.477 -4.570 -2.432 0.538 -4.643 -0.680 -3.150 ML 72 70 6 75 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 27 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 14 - C - - - ML 77 76 6 79 3 1 1 25 43 -8.086 -0.023 -6.403 -1.069 1.378 -1.860 -0.624 D 78 76 6 79 3 0 0 23 42 -6.664 -0.310 -2.447 IL 79 79 3 79 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 24 - A - - MR 80 79 3 82 3 1 1 24 42 -8.363 -0.091 -4.106 1.723 -2.391 -2.021 -1.935 D 81 79 3 82 3 0 0 22 41 -6.390 -1.568 -0.620 IR 82 82 3 82 3 1 1 24 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 23 - C - - MR 83 82 3 85 5 1 1 23 41 -7.035 -0.041 -6.850 -7.063 -7.954 -1.579 1.577 -2.397 -1.026 D 84 82 3 85 5 0 0 21 40 -5.647 -0.547 -3.274 -4.705 -2.699 IR 85 85 3 85 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 15 22 G C - - MP 86 85 3 90 6 2 2 22 40 -9.111 -9.051 -0.021 -7.827 -8.107 -8.502 -4.004 -2.834 -4.050 0.477 -4.342 -1.568 -0.017 -4.451 -3.940 3.451 -4.285 -0.668 -0.337 -3.790 -1.939 -3.084 ML 87 85 3 90 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 3 90 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 3 90 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 16 21 C G - - MP 92 91 6 96 4 2 2 20 38 -6.958 -7.165 -0.053 -5.579 -3.907 -3.875 -1.598 -0.360 -3.148 -4.546 3.486 -3.808 -3.948 -0.113 -4.351 -1.995 0.415 -4.125 -0.975 -2.914 ML 93 91 6 96 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 95 91 6 96 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 96 96 5 96 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 17 - G - - - ML 98 97 6 100 3 1 1 16 35 -7.974 -0.098 -4.017 -1.601 -2.824 1.728 -2.211 D 99 97 6 100 3 0 0 16 34 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 18 - C - - - ML 101 100 3 103 3 1 1 15 33 -7.897 -0.022 -6.551 -1.579 1.577 -2.397 -1.026 D 102 100 3 103 3 0 0 14 33 -6.741 -0.904 -1.132 IL 103 103 3 103 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 19 - U - - - ML 104 103 3 106 3 1 1 13 31 -7.974 -0.020 -6.628 -1.503 -1.496 -2.238 1.623 D 105 103 3 106 3 0 0 13 32 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 20 - C - - - ML 107 106 3 109 2 1 1 1 1 * 0.000 -1.231 1.366 -2.055 -0.405 D 108 106 3 109 2 0 0 0 0 * 0.000 IL 109 109 3 109 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 110 109 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 111 51 1 112 3 0 0 38 57 -7.974 -0.098 -4.017 IL 112 112 2 112 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - C - - - ML 113 112 2 115 3 1 1 38 57 -7.897 -0.022 -6.551 -0.777 1.163 -1.143 -0.465 D 114 112 2 115 3 0 0 37 56 -6.741 -2.254 -0.357 IL 115 115 3 115 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - G - - - ML 116 115 3 118 5 1 1 37 56 -7.035 -0.041 -6.850 -7.063 -7.954 -1.437 -2.634 1.688 -2.020 D 117 115 3 118 5 0 0 36 55 -5.305 -1.149 -4.566 -1.543 -2.854 IL 118 118 3 118 5 1 1 38 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 31 52 G C - - MP 119 118 3 123 6 2 2 36 55 -9.080 -9.019 -0.022 -7.796 -8.076 -8.471 -3.634 -2.650 -3.694 0.755 -3.944 -4.176 0.320 -4.011 -1.295 3.290 -4.047 -0.427 0.005 -3.629 -1.593 -2.687 ML 120 118 3 123 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 3 123 6 1 1 35 54 -7.306 -6.035 -1.127 -6.013 -1.147 -4.227 0.879 -0.753 -0.485 -0.229 D 122 118 3 123 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 32 51 c g - - MP 125 124 6 129 6 2 2 34 53 -9.111 -9.051 -0.050 -5.373 -8.107 -8.502 -2.852 -2.864 -2.930 0.512 -2.363 -3.658 2.794 -2.918 -2.952 0.675 -1.108 -1.103 1.225 -3.106 0.546 -1.975 ML 126 124 6 129 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 33 50 g c - - MP 131 130 6 135 6 2 2 32 51 -9.083 -9.022 -0.021 -7.798 -8.078 -8.473 -3.101 -2.345 -3.145 1.066 -3.443 -3.776 0.661 -3.554 -3.265 2.968 -3.686 0.120 0.397 -0.789 -1.173 -2.208 ML 132 130 6 135 6 1 1 31 50 -6.587 -6.933 -0.923 -1.342 -6.783 -4.312 0.004 -0.407 -0.596 0.661 MR 133 130 6 135 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 34 49 G C - - MP 137 136 6 141 4 2 2 30 49 -6.874 -8.119 -0.080 -4.573 -4.764 -3.105 -4.865 0.185 -5.264 -4.703 -0.623 -5.110 -4.342 3.644 -4.678 -0.804 -1.008 -4.482 -2.661 -3.742 ML 138 136 6 141 4 1 1 30 49 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 4 1 1 29 48 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 140 136 6 141 4 0 0 28 47 -12.737 -14.007 -2.036 -0.404 IL 141 141 5 141 4 1 1 30 49 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 142 142 6 142 3 1 1 30 49 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 48 - G - - MR 143 142 6 145 5 1 1 28 47 -7.102 -0.039 -6.917 -7.129 -8.021 -0.611 -2.101 1.465 -1.508 D 144 142 6 145 5 0 0 27 46 -5.352 -0.707 -2.978 -4.409 -2.404 IR 145 145 3 145 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 35 47 G C - - MP 146 145 3 150 4 2 2 27 46 -6.958 -7.165 -0.053 -5.579 -4.114 -1.106 -4.145 0.618 -4.727 -4.418 -0.212 -4.555 -4.010 3.455 -4.367 -0.494 -0.499 -3.946 -2.178 -3.098 ML 147 145 3 150 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 148 145 3 150 4 1 1 27 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 149 145 3 150 4 0 0 26 46 -4.568 -4.250 -2.265 -0.520 IL 150 150 5 150 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 36 - G - - - ML 152 151 6 154 3 1 1 24 43 -8.363 -0.019 -6.681 -0.611 -2.101 1.465 -1.508 D 153 151 6 154 3 0 0 23 42 -5.620 -0.734 -1.403 IL 154 154 3 154 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 46 - G - - MR 155 154 3 157 5 1 1 23 42 -7.102 -0.107 -6.917 -4.258 -8.021 -0.481 -0.625 1.004 -0.668 D 156 154 3 157 5 0 0 22 41 -5.352 -0.707 -2.978 -4.409 -2.404 IR 157 157 3 157 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 37 45 C G - - MP 158 157 3 162 6 2 2 22 41 -9.080 -9.019 -0.022 -7.796 -8.076 -8.471 -4.417 -4.310 -4.129 -0.555 -2.876 -4.558 3.508 -3.673 -4.174 -0.295 -4.449 -2.256 0.651 -4.494 -0.580 -3.018 ML 159 157 3 162 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 3 162 6 1 1 21 40 -7.306 -6.035 -1.127 -6.013 -1.147 -4.227 0.114 -0.763 0.562 -0.231 D 161 157 3 162 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 38 44 G C - - MP 164 163 6 168 6 2 2 20 39 -9.111 -9.051 -0.021 -7.827 -8.107 -8.502 -4.764 -3.105 -4.865 0.185 -5.264 -4.703 -0.623 -5.110 -4.342 3.644 -4.678 -0.804 -1.008 -4.482 -2.661 -3.742 ML 165 163 6 168 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 39 43 G C - - MP 170 169 6 174 4 2 2 18 37 -6.958 -7.165 -0.053 -5.579 -4.764 -3.105 -4.865 0.185 -5.264 -4.703 -0.623 -5.110 -4.342 3.644 -4.678 -0.804 -1.008 -4.482 -2.661 -3.742 ML 171 169 6 174 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 40 - C - - - ML 176 175 6 178 3 1 1 15 33 -7.974 -0.020 -6.628 -1.764 1.630 -2.589 -1.173 D 177 175 6 178 3 0 0 15 33 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 41 - U - - - ML 179 178 3 181 3 1 1 13 31 -7.974 -0.020 -6.628 -1.503 -1.496 -2.238 1.623 D 180 178 3 181 3 0 0 13 32 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 42 - C - - - ML 182 181 3 184 2 1 1 1 1 * 0.000 -1.764 1.630 -2.589 -1.173 D 183 181 3 184 2 0 0 0 0 * 0.000 IL 184 184 3 184 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 185 184 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME p27_CRE ACC RF00454 DESC p27 cis-regulatory element LENG 59 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:39:36 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 12 EFFN 2.510742 CKSUM 2914299683 STATS LOCAL MSV -7.9304 0.71937 STATS LOCAL VITERBI -8.7050 0.71937 STATS LOCAL FORWARD -3.3263 0.71937 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.71030 1.02922 1.24079 1.75592 1.38629 1.38629 1.38629 1.38629 0.08542 3.97738 2.76246 1.46634 0.26236 0.00000 * 1 2.83461 0.20376 3.41055 2.37970 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04000 3.93196 3.93196 1.46634 0.26236 1.68083 0.20606 2 2.83461 0.20376 3.41055 2.37970 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.04000 3.93196 3.93196 1.46634 0.26236 0.46591 0.98768 3 0.14205 3.31964 3.03590 3.03183 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 4 2.94380 0.18278 3.52009 2.46762 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 5 2.94380 0.18278 3.52009 2.46762 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 6 2.68555 2.63671 3.20591 0.19882 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 7 2.68555 2.63671 3.20591 0.19882 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 8 0.14205 3.31964 3.03590 3.03183 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 9 0.30920 2.87538 1.90342 2.80486 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 10 2.64071 3.32600 0.15711 3.26634 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.29125 1.45272 3.97738 0.15313 1.95208 1.09861 0.40547 11 2.12956 2.38838 0.34780 2.48779 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 12 3.26969 0.22206 3.05863 2.17014 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.29125 3.97738 1.45272 1.46634 0.26236 1.09861 0.40547 13 2.37040 0.32947 2.93246 2.01001 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.04892 3.73505 3.73505 1.46634 0.26236 0.14857 1.98008 14 2.38883 2.54840 0.26453 2.77276 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 15 2.68379 0.26707 2.78802 2.25824 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 16 2.78253 3.67143 0.13493 3.24665 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.10182 3.97738 2.55008 1.46634 0.26236 1.09861 0.40547 17 2.79672 0.21166 3.37225 2.34930 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91621 3.91621 1.46634 0.26236 0.39198 1.12613 18 2.68555 2.63671 3.20591 0.19882 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 19 2.45557 0.36070 3.04148 1.77648 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 20 2.50464 2.96245 0.21538 2.80729 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 21 3.01886 0.26621 2.71436 2.13182 22 C - - > 1.38629 1.38629 1.38629 1.38629 0.10182 3.97738 2.55008 1.46634 0.26236 1.09861 0.40547 22 2.79672 0.21166 3.37225 2.34930 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.04065 3.91621 3.91621 1.46634 0.26236 0.39198 1.12613 23 0.14205 3.31964 3.03590 3.03183 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 24 2.44541 3.22391 0.19212 3.03035 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 25 2.71968 0.39750 2.43549 1.74554 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 26 3.44748 0.18832 3.15249 2.33219 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 27 3.01000 2.20411 2.67625 0.25937 28 U - - > 1.38629 1.38629 1.38629 1.38629 0.10182 3.97738 2.55008 1.46634 0.26236 1.09861 0.40547 28 2.10190 0.47999 2.28714 1.84876 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.04065 3.91621 3.91621 1.46634 0.26236 1.81928 0.17691 29 2.65811 3.53011 0.15569 3.10563 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.04065 3.91621 3.91621 1.46634 0.26236 1.81928 0.17691 30 2.18683 2.63378 0.30630 2.52883 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91621 3.91621 1.46634 0.26236 0.39198 1.12613 31 2.24411 0.73959 1.84636 1.35148 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 32 1.89008 2.28736 0.52963 1.84146 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 33 2.60856 3.28667 0.16403 3.21227 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 34 2.08137 2.96772 0.26753 2.83775 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 35 1.92244 3.04962 0.30691 2.64994 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.10182 3.97738 2.55008 1.46634 0.26236 1.09861 0.40547 36 3.15156 0.25102 2.92270 2.07612 37 C - - < 1.38629 1.38629 1.38629 1.38629 0.04065 3.91621 3.91621 1.46634 0.26236 0.39198 1.12613 37 2.63422 3.31804 0.15849 3.25533 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 38 2.63413 3.31793 0.15851 3.25518 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 39 2.94380 0.18278 3.52009 2.46762 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 40 2.68555 2.63671 3.20591 0.19882 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 41 2.94380 0.18278 3.52009 2.46762 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 42 3.35967 0.19608 3.11190 2.31479 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 43 3.29049 0.20273 3.07856 2.30020 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 44 2.27845 3.00400 0.23971 2.79497 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 45 1.84133 1.84706 0.60334 1.98990 46 G - - - 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 46 3.08280 0.27356 2.80289 2.01837 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 47 1.92244 3.04962 0.30691 2.64994 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 48 3.42967 0.18984 3.14441 2.32876 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.09692 3.97738 2.60856 1.46634 0.26236 1.09861 0.40547 49 2.39521 0.54926 2.11393 1.55730 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.04045 3.92091 3.92091 1.46634 0.26236 0.41132 1.08700 50 1.78581 2.21848 0.52406 2.02910 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 51 2.32151 0.40581 2.43921 1.90914 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 52 1.05354 2.53754 0.79013 2.13323 53 g - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 53 0.14205 3.31964 3.03590 3.03183 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 54 2.94380 0.18278 3.52009 2.46762 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 55 2.94380 0.18278 3.52009 2.46762 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 56 0.14205 3.31964 3.03590 3.03183 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 57 0.14205 3.31964 3.03590 3.03183 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 58 2.68555 2.63671 3.20591 0.19882 59 U - - : 1.38629 1.38629 1.38629 1.38629 0.03819 3.97738 3.97738 1.46634 0.26236 1.09861 0.40547 59 2.78253 3.67143 0.13493 3.24665 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.01928 3.95847 * 1.46634 0.26236 0.00000 * //