INFERNAL1/a [1.1.4 | Dec 2020] NAME S-element ACC RF00490 DESC S-element STATES 205 NODES 47 CLEN 67 W 85 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:42:21 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 29 EFFN 4.655151 CKSUM 3456039134 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.40 NC 45.10 EFP7GF -10.6456 0.71910 ECMLC 0.53063 -9.29619 2.58495 1600000 656421 0.001828 ECMGC 0.40894 -18.27630 -4.23597 1600000 124624 0.003210 ECMLI 0.52682 -7.18725 3.96784 1600000 427953 0.002804 ECMGI 0.45161 -12.25173 -0.54303 1600000 79162 0.005053 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 105 -7.775 -7.982 -0.030 -6.396 IL 1 1 2 1 4 1 20 88 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 87 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 20 85 105 -8.746 -0.012 -7.400 0.505 -0.375 -1.326 0.497 D 4 2 3 5 3 0 14 83 104 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 86 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 19 84 104 -8.746 -0.012 -7.400 -3.082 -4.478 1.913 -3.823 D 7 5 3 8 3 0 13 82 103 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 18 85 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 18 83 103 -8.746 -0.012 -7.400 -2.953 -2.714 -3.732 1.865 D 10 8 3 11 3 0 12 81 102 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 17 84 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 17 82 102 -8.746 -0.012 -7.400 -3.543 1.889 -4.296 -2.654 D 13 11 3 14 3 0 11 80 101 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 16 83 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 16 81 101 -8.746 -0.012 -7.400 1.909 -3.903 -3.402 -3.594 D 16 14 3 17 3 0 10 79 100 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 16 82 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 16 80 100 -8.746 -0.012 -7.400 1.909 -3.903 -3.402 -3.594 D 19 17 3 20 3 0 9 78 99 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 15 81 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 15 78 99 -8.746 -0.012 -7.400 -3.082 -4.478 1.913 -3.823 D 22 20 3 23 3 0 9 77 98 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 14 80 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 14 77 98 -9.096 -0.011 -7.414 1.361 -0.769 -1.773 -0.856 D 25 23 3 26 3 0 8 76 97 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 12 78 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 81 - G - - MR 27 26 3 29 3 1 13 76 97 -9.096 -0.011 -7.414 -1.186 -3.231 1.723 -2.700 D 28 26 3 29 3 0 6 75 95 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 11 77 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 80 - U - - MR 30 29 3 32 3 1 12 75 96 -9.096 -0.011 -7.414 -1.240 -1.457 -2.398 1.596 D 31 29 3 32 3 0 5 74 94 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 10 76 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 79 - A - - MR 33 32 3 35 5 1 12 74 95 -1.728 -0.543 -7.611 -7.823 -8.715 1.909 -3.903 -3.402 -3.594 D 34 32 3 35 5 0 4 73 93 -5.352 -0.707 -2.978 -4.409 -2.404 IR 35 35 3 35 5 1 10 74 95 -3.645 -0.334 -7.156 -3.213 -6.430 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 77 g c - - MP 36 35 3 40 6 2 13 73 93 -9.444 -9.383 -0.017 -8.160 -8.439 -8.834 -1.367 -1.175 -2.092 1.008 -2.121 -2.821 1.139 -2.415 1.025 1.711 -1.346 0.080 0.985 -2.187 -0.321 -1.308 ML 37 35 3 40 6 1 6 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 38 35 3 40 6 1 6 72 92 -7.451 -6.180 -0.972 -6.158 -1.292 -4.372 1.011 -0.877 -0.621 -0.339 D 39 35 3 40 6 0 2 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 40 40 5 40 6 1 8 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 41 41 6 41 5 1 8 72 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 76 U A - - MP 42 41 6 46 6 2 12 71 91 -9.481 -9.420 -0.016 -8.197 -8.476 -8.871 -3.693 -3.665 -3.717 0.032 -1.620 -4.450 1.442 -3.522 -3.703 0.657 -4.186 -1.676 3.030 -3.916 0.204 -2.612 ML 43 41 6 46 6 1 6 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 44 41 6 46 6 1 6 69 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 45 41 6 46 6 0 2 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 46 46 5 46 6 1 7 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 47 47 6 47 5 1 7 70 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 75 c g - - MP 48 47 6 52 6 2 10 69 89 -9.481 -9.420 -0.091 -8.197 -4.241 -8.871 -2.893 -2.984 -1.090 0.398 -1.245 -3.810 2.731 -3.053 -3.030 0.443 -3.560 -1.264 1.315 -3.178 0.909 -2.073 ML 49 47 6 52 6 1 5 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 6 52 6 1 5 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 6 52 6 0 1 65 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 7 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 7 68 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 74 u a - - MP 54 53 6 58 6 2 9 67 88 -9.407 -9.346 -0.066 -4.785 -8.402 -8.797 -1.373 -2.042 -2.046 0.955 -1.954 -2.896 1.689 -2.341 -1.494 0.850 -2.672 -0.630 2.028 -1.583 0.668 -1.273 ML 55 53 6 58 6 1 5 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 5 66 87 -7.795 -2.842 -1.044 -6.502 -1.636 -4.716 0.546 -0.912 0.271 -0.319 D 57 53 6 58 6 0 1 63 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 6 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 6 66 87 -2.567 -0.436 -6.078 -4.246 -5.352 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 72 u a - - MP 60 59 6 64 6 2 8 65 86 -9.435 -9.375 -0.112 -5.667 -4.334 -8.826 -1.326 -2.049 -1.389 0.933 -1.967 -2.899 1.402 -2.352 -2.109 0.824 -1.951 -0.649 2.237 -2.193 0.676 -1.282 ML 61 59 6 64 6 1 5 64 85 -6.868 -7.214 -0.711 -1.623 -7.064 -4.593 -0.221 -0.517 -0.845 0.916 MR 62 59 6 64 6 1 4 64 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 1 62 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 6 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 6 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 71 u a - - MP 66 65 6 70 4 2 7 63 84 -7.596 -7.803 -0.034 -6.217 -1.547 -2.691 -2.725 0.606 -1.291 -3.550 1.639 -2.842 -2.753 0.631 -3.299 -1.036 2.601 -2.882 0.389 -1.826 ML 67 65 6 70 4 1 4 63 83 -4.022 -4.205 -0.409 -2.934 0.864 -0.740 -0.470 -0.219 MR 68 65 6 70 4 1 3 63 83 -5.641 -2.485 -1.086 -1.598 1.223 -1.133 -0.876 -0.588 D 69 65 6 70 4 0 1 62 82 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 5 64 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 5 63 84 -1.586 -0.700 -4.286 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - G - - - ML 72 71 6 74 3 1 6 61 81 -8.746 -0.012 -7.400 -0.630 -2.871 1.595 -2.350 D 73 71 6 74 3 0 0 60 80 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 4 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - G - - - ML 75 74 3 77 5 1 6 60 80 -7.796 -0.024 -7.611 -7.823 -8.715 -1.180 -3.227 1.721 -2.696 D 76 74 3 77 5 0 0 59 79 -4.959 -0.803 -4.221 -2.596 -2.508 IL 77 77 3 77 5 1 3 60 81 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 17 69 C G - - MP 78 77 3 82 6 2 7 59 79 -9.481 -9.420 -0.016 -8.197 -8.476 -8.871 -1.856 -3.883 -3.830 -0.340 0.573 -4.504 3.279 -3.682 -3.854 -0.246 -4.300 -2.051 0.588 -4.055 -0.810 -2.820 ML 79 77 3 82 6 1 2 57 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 2 57 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 2 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 3 58 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 18 68 g u - - MP 84 83 6 88 6 2 6 57 77 -9.481 -9.420 -0.016 -8.197 -8.476 -8.871 -4.085 -0.092 -4.299 2.546 -5.371 -5.586 -1.108 -4.432 -3.979 0.752 -4.466 2.601 -1.287 -4.811 -2.947 -3.040 ML 85 83 6 88 6 1 2 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 2 55 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 53 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 2 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 2 56 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 19 67 C G - - MP 90 89 6 94 6 2 5 55 75 -9.481 -9.420 -0.016 -8.197 -8.476 -8.871 -5.072 -5.148 -4.663 -1.322 -3.220 -4.988 3.060 -4.062 -4.710 -1.198 -4.954 -3.219 0.255 -5.065 2.334 -3.528 ML 91 89 6 94 6 1 1 54 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 54 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 52 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 2 55 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 2 54 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 20 66 C G - - MP 96 95 6 100 4 2 3 53 73 -7.775 -7.982 -0.030 -6.396 -6.279 -6.332 -5.648 -2.504 -4.095 -5.831 3.860 -5.092 -5.818 -2.421 -5.827 -4.376 -0.829 -6.229 -1.909 -4.623 ML 97 95 6 100 4 1 1 53 74 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 53 73 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 52 72 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 2 55 75 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 21 - G - - - ML 102 101 6 104 5 1 2 51 71 -2.485 -0.305 -7.611 -7.823 -8.715 -0.168 -1.537 1.200 -1.093 D 103 101 6 104 5 0 0 49 69 -4.959 -0.803 -4.221 -2.596 -2.508 IL 104 104 3 104 5 1 1 51 71 -1.787 -0.937 -2.568 -7.097 -6.371 0.000 0.000 0.000 0.000 [ MATP 25 ] 25 65 u a - - MP 105 104 3 109 6 2 3 49 70 -5.643 -9.358 -0.044 -8.135 -8.415 -8.810 -0.155 -2.171 -2.179 0.867 -2.047 -3.023 1.443 -2.449 -1.319 0.792 -2.797 -0.724 2.270 -2.324 0.360 -1.390 ML 106 104 3 109 6 1 1 48 68 -7.033 -7.379 -1.324 -0.880 -7.229 -4.758 0.350 -0.539 -0.690 0.503 MR 107 104 3 109 6 1 1 47 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 3 109 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 49 70 -1.884 -3.380 -0.831 -5.036 -5.812 -5.472 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 48 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 28 64 u a - - MP 111 110 6 115 6 2 3 47 67 -9.444 -9.383 -0.017 -8.160 -8.439 -8.834 -2.759 -2.846 -2.910 0.627 -2.597 -3.747 1.304 -3.055 -2.940 0.535 -3.493 -1.172 2.910 -2.014 -0.101 -1.324 ML 112 110 6 115 6 1 1 46 66 -6.772 -7.118 -0.775 -1.527 -6.968 -4.498 -0.147 -0.475 -0.762 0.838 MR 113 110 6 115 6 1 1 45 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 47 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 46 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 29 63 u a - - MP 117 116 6 121 6 2 3 45 65 -9.481 -9.420 -0.016 -8.197 -8.476 -8.871 -1.252 -2.155 -2.164 0.884 -1.501 -3.015 1.504 -2.440 -2.217 0.794 -2.785 -0.415 2.156 -2.308 0.748 -0.723 ML 118 116 6 121 6 1 1 44 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 43 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 45 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 44 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 30 62 c g - - MP 123 122 6 127 6 2 3 43 63 -4.088 -4.068 -0.196 -8.197 -8.476 -8.871 -1.997 -2.170 -2.180 0.869 -1.006 -3.028 1.688 -2.455 -2.233 1.009 -2.800 -0.723 1.295 -1.617 1.598 -0.573 ML 124 122 6 127 6 1 1 41 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 41 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 39 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 42 63 -3.370 -3.633 -0.390 -5.288 -6.064 -5.725 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 42 62 -2.943 -0.324 -6.454 -4.622 -5.728 0.000 0.000 0.000 0.000 [ MATP 29 ] 32 60 g u - - MP 129 128 6 133 6 2 3 41 61 -9.481 -4.540 -0.078 -8.197 -8.476 -8.871 -2.129 -0.021 -4.011 0.447 -4.201 -2.004 0.563 -2.806 0.381 0.837 0.024 2.544 -0.503 -2.669 -1.509 -1.806 ML 130 128 6 133 6 1 1 40 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 40 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 38 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 40 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 40 60 -2.809 -0.359 -6.321 -4.488 -5.594 0.000 0.000 0.000 0.000 [ MATP 30 ] 33 58 g c - - MP 135 134 6 139 4 2 2 39 59 -7.775 -4.254 -0.143 -4.748 -1.866 -1.729 -2.101 0.979 -1.524 -2.794 1.197 -2.404 -0.501 1.696 -0.408 0.951 1.117 -2.185 -0.291 -1.307 ML 136 134 6 139 4 1 1 39 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 39 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 37 58 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 40 61 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 40 60 -1.308 -0.850 -4.597 0.000 0.000 0.000 0.000 [ MATL 31 ] 34 - u - - - ML 141 140 6 143 3 1 1 35 54 -9.062 -0.197 -2.988 -0.913 0.154 -1.181 0.937 D 142 140 6 143 3 0 0 34 53 -5.924 -0.562 -1.707 IL 143 143 3 143 3 1 1 36 55 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 55 - u - - MR 144 143 3 146 5 1 1 34 53 -7.624 -0.027 -7.439 -7.651 -8.543 -0.088 -1.090 0.160 0.558 D 145 143 3 146 5 0 0 33 52 -6.290 -0.326 -3.916 -5.347 -3.341 IR 146 146 3 146 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 35 54 G U - - MP 147 146 3 151 4 2 2 33 52 -7.775 -7.982 -0.030 -6.396 -4.351 -2.883 -4.674 0.447 -6.091 -6.080 -1.507 -4.621 -4.106 0.679 -4.562 3.500 -1.766 -5.445 -3.450 -0.819 ML 148 146 3 151 4 1 1 34 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 150 146 3 151 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 151 151 5 151 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 152 152 6 152 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - A - - - ML 153 152 6 155 3 1 1 30 49 -5.016 -0.054 -7.414 1.480 -2.408 -0.382 -1.972 D 154 152 6 155 3 0 0 29 48 -5.620 -0.734 -1.403 IL 155 155 3 155 3 1 1 31 49 -2.138 -0.465 -4.376 0.000 0.000 0.000 0.000 [ MATR 35 ] - 53 - C - - MR 156 155 3 158 5 1 1 29 48 -7.796 -0.063 -7.611 -5.017 -8.715 -3.543 1.889 -4.296 -2.654 D 157 155 3 158 5 0 0 28 47 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 38 52 G C - - MP 159 158 3 163 6 2 2 28 47 -9.458 -9.397 -0.017 -8.174 -8.454 -8.849 -5.337 -0.443 -5.438 -0.220 -6.377 -5.028 -1.474 -5.905 -4.855 3.697 -5.138 -1.179 -1.753 -4.841 -3.532 -4.351 ML 160 158 3 163 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 27 45 -7.291 -6.020 -1.144 -5.998 -1.132 -4.212 0.018 0.344 -0.675 0.127 D 162 158 3 163 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 39 51 C G - - MP 165 164 6 169 6 2 2 26 45 -9.481 -9.420 -0.016 -8.197 -8.476 -8.871 -4.206 -4.214 -4.092 -0.491 -3.024 -4.665 3.224 -3.743 -4.100 -0.350 -1.958 -2.252 0.639 -4.361 1.320 -2.987 ML 166 164 6 169 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 40 50 g u - - MP 171 170 6 175 6 2 2 24 43 -9.481 -9.420 -0.016 -8.197 -8.476 -8.871 -4.101 -2.891 -4.313 2.324 -5.287 -5.652 -1.016 -4.421 -3.987 0.662 -4.488 2.831 -1.223 -4.858 -2.878 -0.398 ML 172 170 6 175 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 41 49 G U - - MP 177 176 6 181 6 2 2 22 41 -9.481 -9.420 -0.016 -8.197 -8.476 -8.871 -4.124 -2.690 -4.488 1.505 -5.633 -5.494 -1.202 -4.453 -3.922 0.458 -4.317 3.183 -1.471 -5.016 -3.113 0.380 ML 178 176 6 181 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 42 48 a u - - MP 183 182 6 187 4 2 2 20 39 -7.775 -7.982 -0.030 -6.396 -2.391 -2.329 -2.542 2.517 -2.556 -3.387 0.967 -1.838 -2.623 1.233 -3.163 0.370 0.761 -2.676 -0.360 -0.589 ML 184 182 6 187 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 186 182 6 187 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 187 187 5 187 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 188 188 6 188 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 43 - U - - - ML 189 188 6 191 3 1 1 17 35 -8.746 -0.057 -4.789 -0.638 -1.184 -2.020 1.417 D 190 188 6 191 3 0 0 17 35 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 44 - U - - - ML 192 191 3 194 3 1 1 16 34 -8.701 -0.012 -7.355 -1.203 -1.284 -1.723 1.512 D 193 191 3 194 3 0 0 15 34 -6.741 -0.904 -1.132 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 45 - U - - - ML 195 194 3 197 3 1 1 14 33 -8.746 -0.012 -7.400 -2.953 -2.714 -3.732 1.865 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 46 - C - - - ML 198 197 3 200 3 1 1 13 31 -8.746 -0.012 -7.400 -3.543 1.889 -4.296 -2.654 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - U - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 -2.220 -1.534 -2.968 1.728 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME S-element ACC RF00490 DESC S-element LENG 67 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:42:21 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 29 EFFN 7.565063 CKSUM 3456039134 STATS LOCAL MSV -7.9507 0.71910 STATS LOCAL VITERBI -9.1023 0.71910 STATS LOCAL FORWARD -3.8706 0.71910 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53054 1.62079 1.21188 1.24410 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 0.00000 * 1 0.99663 1.66668 2.49659 1.02265 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 2 4.06333 5.08886 0.03426 4.57349 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 3 4.03878 3.80220 4.58878 0.05140 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 4 4.45486 0.04220 4.88162 3.81145 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 5 0.03363 4.71042 4.33328 4.51443 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 6 0.03363 4.71042 4.33328 4.51443 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 7 4.06333 5.08886 0.03426 4.57349 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 8 0.35853 1.95714 2.98818 2.21040 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.07501 4.36534 2.82079 1.46634 0.26236 1.09861 0.40547 9 1.75069 2.03062 0.63080 1.81445 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.02703 4.31736 4.31736 1.46634 0.26236 0.35545 1.20685 10 2.94045 1.84475 2.25478 0.37951 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 11 2.26929 0.63978 2.47330 1.25561 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.12566 4.36534 2.25020 1.46634 0.26236 1.09861 0.40547 12 1.81376 1.47789 1.77648 0.82187 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.02842 4.26809 4.26809 1.46634 0.26236 0.21611 1.63809 13 1.75836 1.72863 1.83040 0.71377 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.11551 4.36534 2.33948 1.46634 0.26236 1.09861 0.40547 14 2.05648 1.56084 2.18874 0.59770 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.02813 4.27796 4.27796 1.46634 0.26236 0.23409 1.56680 15 1.90143 3.80402 0.22677 3.46549 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 16 2.34021 4.07105 0.14824 3.71263 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 17 2.93783 0.20388 3.26779 2.37122 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 18 0.76099 4.20822 0.69889 3.87357 18 g - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 19 4.00596 0.59087 3.87806 0.89830 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 20 4.77697 0.04820 4.72709 3.51389 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 21 1.58047 2.63348 0.45984 2.39792 21 G - - - 1.38629 1.38629 1.38629 1.38629 0.24334 1.59313 4.36534 0.52659 0.89310 1.09861 0.40547 22 1.62458 1.75646 1.88950 0.73563 25 u - - < 1.38629 1.38629 1.38629 1.38629 0.06008 3.08781 4.36534 0.89166 0.52759 1.09861 0.40547 23 2.17420 1.85196 2.20678 0.47914 28 U - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 24 1.84505 1.61591 1.82366 0.73014 29 u - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 25 1.98823 1.39911 1.77406 0.80609 30 u - - < 1.38629 1.38629 1.38629 1.38629 0.14110 2.12960 4.36534 0.20162 1.70050 1.09861 0.40547 26 2.14218 2.69312 0.26488 3.04425 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 27 1.88575 1.84190 0.69686 1.65223 33 g - - < 1.38629 1.38629 1.38629 1.38629 0.05122 4.36534 3.29101 1.46634 0.26236 1.09861 0.40547 28 2.30899 1.22526 2.31230 0.67742 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.02640 4.34053 4.34053 1.46634 0.26236 0.52061 0.90179 29 2.67496 4.20290 0.14758 2.93094 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 30 0.30034 3.57606 1.62758 3.35114 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.08873 3.14125 3.17787 0.51068 0.91651 1.09861 0.40547 31 2.39895 4.24929 0.12870 4.15574 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.02653 4.33595 4.33595 1.46634 0.26236 0.47622 0.97055 32 3.57823 0.39216 2.97273 1.40520 39 C - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 33 1.07614 4.17541 0.55547 2.66045 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 34 1.73874 4.21389 0.35489 2.22360 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 35 0.78923 2.06531 1.45980 1.67802 42 a - - < 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 36 1.94329 2.42804 3.17050 0.31941 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05756 4.36534 3.14125 1.46634 0.26236 1.09861 0.40547 37 2.51016 2.51427 2.78083 0.25381 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02657 4.33434 4.33434 1.46634 0.26236 0.46251 0.99345 38 4.03878 3.80220 4.58878 0.05140 45 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 39 4.45486 0.04220 4.88162 3.81145 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 40 3.38316 2.63424 3.89754 0.13468 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 41 2.23046 1.97517 1.88805 0.50680 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 42 4.01667 2.87298 3.95059 0.09848 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 43 3.93087 2.81533 3.88554 0.10541 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 44 2.65353 3.49680 0.14918 3.27310 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 45 3.95673 0.10195 3.92627 2.84594 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 46 4.45486 0.04220 4.88162 3.81145 53 C - - - 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 47 4.11915 2.52254 4.03092 0.12135 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.16072 4.36534 1.99686 1.46634 0.26236 1.09861 0.40547 48 1.50822 2.32921 1.20902 0.96015 55 u - - - 1.38629 1.38629 1.38629 1.38629 0.08600 2.68948 4.23403 0.84443 0.56177 0.17164 1.84697 49 1.55633 1.32152 1.44657 1.24832 58 u - - > 1.38629 1.38629 1.38629 1.38629 0.10784 2.41329 4.36534 0.26318 1.46361 1.09861 0.40547 50 1.83706 1.86050 1.85953 0.63606 60 U - - > 1.38629 1.38629 1.38629 1.38629 0.14272 2.11783 4.36534 0.19938 1.71056 1.09861 0.40547 51 1.60681 1.84284 0.79008 1.67506 62 g - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 52 0.97275 2.07318 1.21444 1.61295 63 a - - > 1.38629 1.38629 1.38629 1.38629 0.07501 4.36534 2.82079 1.46634 0.26236 1.09861 0.40547 53 0.61734 2.25539 1.56381 1.92106 64 A - - > 1.38629 1.38629 1.38629 1.38629 0.06048 4.31736 3.09327 1.46634 0.26236 1.89999 0.16201 54 0.71478 2.18350 1.38884 1.90589 65 a - - > 1.38629 1.38629 1.38629 1.38629 0.02794 4.28481 4.28481 1.46634 0.26236 0.24858 1.51369 55 3.77282 4.86355 0.04173 4.58925 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 56 2.89824 4.01252 0.10165 3.75309 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 57 4.01517 2.10024 3.95452 0.17392 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 58 1.45740 3.41568 0.36618 3.19603 69 G - - > 1.38629 1.38629 1.38629 1.38629 0.08446 3.23619 3.17787 0.55541 0.85293 1.09861 0.40547 59 0.63643 2.38228 1.34459 2.13845 71 A - - > 1.38629 1.38629 1.38629 1.38629 0.08916 4.33595 2.62815 1.46634 0.26236 0.47622 0.97055 60 0.93992 2.03250 1.19780 1.73456 72 a - - > 1.38629 1.38629 1.38629 1.38629 0.05813 3.14679 4.30621 0.54078 0.87298 0.30934 1.32399 61 1.04933 1.95308 1.11359 1.71694 74 a - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 62 1.74463 2.63548 0.40883 2.41709 75 G - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 63 0.46767 2.34848 1.56493 2.67476 76 A - - > 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 64 1.07740 1.28315 1.69782 1.61306 77 a - - > 1.38629 1.38629 1.38629 1.38629 0.43188 1.08470 4.36534 0.07358 2.64591 1.09861 0.40547 65 0.03363 4.71042 4.33328 4.51443 79 A - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 66 2.46034 2.65124 3.47058 0.20711 80 U - - : 1.38629 1.38629 1.38629 1.38629 0.02575 4.36534 4.36534 1.46634 0.26236 1.09861 0.40547 67 2.34508 4.07420 0.14756 3.71550 81 G - - : 1.38629 1.38629 1.38629 1.38629 0.01296 4.35255 * 1.46634 0.26236 0.00000 * //