INFERNAL1/a [1.1.4 | Dec 2020] NAME Ocean-V ACC RF01714 DESC Ocean-V RNA STATES 225 NODES 67 CLEN 72 W 89 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:37:26 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 1.702148 CKSUM 2700672833 NULL 0.000 0.000 0.000 0.000 GA 75.00 TC 86.30 NC 53.80 EFP7GF -9.0379 0.71887 ECMLC 0.70541 -5.00011 3.15146 1600000 377100 0.003182 ECMGC 0.42513 -14.83561 -2.45829 1600000 77147 0.005185 ECMLI 0.64849 -3.75386 4.62676 1600000 275088 0.004362 ECMGI 0.46102 -10.01267 0.91282 1600000 61594 0.006494 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 89 109 -6.852 -7.059 -0.057 -5.473 IL 1 1 2 1 4 2 29 93 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 29 92 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 3 28 89 109 -7.875 -0.022 -6.529 1.677 -2.192 -1.842 -1.718 D 4 2 3 5 3 0 24 88 108 -6.174 -1.687 -0.566 IL 5 5 3 5 3 2 28 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - c - - - ML 6 5 3 8 3 2 28 88 108 -7.875 -0.022 -6.529 -0.676 0.703 -1.460 0.467 D 7 5 3 8 3 0 23 87 107 -6.174 -1.687 -0.566 IL 8 8 3 8 3 2 27 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 2 27 87 107 -7.875 -0.022 -6.529 0.265 -0.788 -1.070 0.802 D 10 8 3 11 3 0 22 86 106 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 26 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - c - - - ML 12 11 3 14 3 2 26 86 106 -7.875 -0.022 -6.529 -0.676 0.703 -1.460 0.467 D 13 11 3 14 3 0 22 85 105 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 26 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 2 25 85 105 -7.875 -0.022 -6.529 -1.323 -1.348 -2.048 1.568 D 16 14 3 17 3 0 21 83 104 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 25 87 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 2 24 84 104 -7.875 -0.022 -6.529 -1.323 -1.348 -2.048 1.568 D 19 17 3 20 3 0 20 82 103 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 24 86 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 23 83 103 -7.875 -0.022 -6.529 -1.323 -1.348 -2.048 1.568 D 22 20 3 23 3 0 20 81 102 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 23 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 1 22 82 102 -7.875 -0.022 -6.529 0.265 -0.788 -1.070 0.802 D 25 23 3 26 3 0 19 80 101 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 22 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 21 81 101 -8.272 -0.020 -6.589 -1.323 -1.348 -2.048 1.568 D 28 26 3 29 3 0 18 80 100 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 21 82 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 73 - U - - MR 30 29 3 32 3 1 20 80 100 -8.272 -0.020 -6.589 -1.323 -1.348 -2.048 1.568 D 31 29 3 32 3 0 17 78 98 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 20 81 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 72 - C - - MR 33 32 3 35 3 1 19 79 99 -8.272 -0.020 -6.589 -1.527 1.561 -2.343 -0.985 D 34 32 3 35 3 0 16 77 97 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 19 80 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 71 - A - - MR 36 35 3 38 3 1 18 78 98 -8.272 -0.020 -6.589 1.001 -1.328 0.014 -0.758 D 37 35 3 38 3 0 15 76 96 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 18 79 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 70 - A - - MR 39 38 3 41 3 1 17 77 97 -8.272 -0.020 -6.589 1.677 -2.192 -1.842 -1.718 D 40 38 3 41 3 0 15 75 95 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 17 78 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 69 - A - - MR 42 41 3 44 3 1 16 76 96 -8.272 -0.020 -6.589 1.677 -2.192 -1.842 -1.718 D 43 41 3 44 3 0 14 74 94 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 17 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 68 - A - - MR 45 44 3 47 3 1 15 75 95 -8.272 -0.020 -6.589 1.677 -2.192 -1.842 -1.718 D 46 44 3 47 3 0 14 73 93 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 16 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 67 - G - - MR 48 47 3 50 2 1 14 74 94 -8.249 -0.005 -1.390 -2.579 1.676 -1.965 D 49 47 3 50 2 0 14 73 93 -4.432 -0.068 IR 50 50 3 50 2 1 15 75 95 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 17 ] - - - - - - B 51 50 3 52 114 0 13 73 93 [ BEGL 18 ] - - - - - - S 52 51 1 53 4 0 0 34 53 -0.046 -6.786 -6.193 -6.833 [ MATP 19 ] 10 29 G C - - MP 53 52 1 57 6 2 2 34 53 -9.071 -9.011 -0.022 -7.787 -8.067 -8.462 -4.571 -3.013 -4.656 0.312 -4.992 -4.626 -0.399 -4.885 -4.214 3.594 -4.564 -0.706 -0.789 -4.355 -2.427 -3.536 ML 54 52 1 57 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 1 57 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 1 57 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 11 28 g c - - MP 59 58 6 63 6 2 2 32 51 -9.071 -9.011 -0.022 -7.787 -8.067 -8.462 -3.353 -2.427 -3.408 2.396 -3.746 -4.384 0.590 -3.628 -3.377 2.492 -3.870 -0.034 0.272 -3.627 -1.354 -2.300 ML 60 58 6 63 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 12 27 c g - - MP 65 64 6 69 6 2 2 30 49 -9.071 -9.011 -0.022 -7.787 -8.067 -8.462 -3.549 -3.468 -3.444 0.243 -2.437 -4.033 2.468 -3.131 -3.460 0.523 -3.858 -1.454 2.459 -3.696 -0.119 -2.340 ML 66 64 6 69 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 13 26 U A - - MP 71 70 6 75 6 2 2 28 47 -9.071 -9.011 -0.022 -7.787 -8.067 -8.462 -4.007 -3.826 -3.865 -0.135 -2.848 -4.446 1.476 -3.530 -3.872 0.148 -4.254 -1.731 3.233 -4.165 -0.528 -2.714 ML 72 70 6 75 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 14 25 U A - - MP 77 76 6 81 6 2 2 26 45 -9.071 -9.011 -0.022 -7.787 -8.067 -8.462 -4.007 -3.826 -3.865 -0.135 -2.848 -4.446 1.476 -3.530 -3.872 0.148 -4.254 -1.731 3.233 -4.165 -0.528 -2.714 ML 78 76 6 81 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 15 24 C G - - MP 83 82 6 87 6 2 2 24 43 -9.071 -9.011 -0.022 -7.787 -8.067 -8.462 -4.372 -4.261 -4.091 -0.510 -2.849 -4.526 3.492 -3.641 -4.135 -0.243 -4.414 -2.206 0.682 -4.452 -0.552 -2.981 ML 84 82 6 87 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 16 23 A U - - MP 89 88 6 93 4 2 2 22 41 -6.852 -7.059 -0.057 -5.473 -3.648 -2.717 -3.676 3.230 -3.944 -4.994 0.347 -3.727 -3.574 1.234 -4.115 -0.218 -0.071 -4.205 -1.595 -2.519 ML 90 88 6 93 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 92 88 6 93 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 93 93 5 93 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 94 94 6 94 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 17 - U - - - ML 95 94 6 97 3 1 1 19 38 -7.875 -0.022 -6.529 -1.323 -1.348 -2.048 1.568 D 96 94 6 97 3 0 0 18 37 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 18 - U - - - ML 98 97 3 100 3 1 1 18 36 -7.875 -0.022 -6.529 -1.323 -1.348 -2.048 1.568 D 99 97 3 100 3 0 0 17 36 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 19 - C - - - ML 101 100 3 103 3 1 1 16 35 -7.875 -0.022 -6.529 -1.527 1.561 -2.343 -0.985 D 102 100 3 103 3 0 0 16 34 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - A - - - ML 104 103 3 106 3 1 1 15 33 -7.875 -0.022 -6.529 1.677 -2.192 -1.842 -1.718 D 105 103 3 106 3 0 0 15 33 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 21 - g - - - ML 107 106 3 109 3 1 1 13 32 -7.875 -0.022 -6.529 0.408 -1.400 0.783 -0.803 D 108 106 3 109 3 0 0 13 32 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 22 - U - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 -1.323 -1.348 -2.048 1.568 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 114 51 1 115 3 0 2 52 72 -7.875 -0.022 -6.529 IL 115 115 2 115 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - C - - - ML 116 115 2 118 3 1 2 52 72 -7.875 -0.022 -6.529 -1.527 1.561 -2.343 -0.985 D 117 115 2 118 3 0 0 51 71 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - U - - - ML 119 118 3 121 3 1 2 51 71 -7.875 -0.022 -6.529 -1.323 -1.348 -2.048 1.568 D 120 118 3 121 3 0 0 50 69 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - C - - - ML 122 121 3 124 3 1 2 50 70 -7.875 -0.022 -6.529 -1.527 1.561 -2.343 -0.985 D 123 121 3 124 3 0 0 48 68 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - A - - - ML 125 124 3 127 3 1 1 49 69 -2.488 -0.302 -6.529 1.677 -2.192 -1.842 -1.718 D 126 124 3 127 3 0 0 47 66 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 49 69 -1.906 -0.531 -4.606 0.000 0.000 0.000 0.000 [ MATL 38 ] 35 - a - - - ML 128 127 3 130 3 1 1 47 67 -7.875 -0.022 -6.529 0.922 -0.211 -1.051 -0.400 D 129 127 3 130 3 0 0 46 66 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 36 - G - - - ML 131 130 3 133 3 1 1 46 66 -7.875 -0.022 -6.529 -1.390 -2.579 1.676 -1.965 D 132 130 3 133 3 0 0 45 65 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - c - - - ML 134 133 3 136 3 1 1 45 65 -7.875 -0.022 -6.529 -0.676 0.703 -1.460 0.467 D 135 133 3 136 3 0 0 44 63 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 38 - g - - - ML 137 136 3 139 3 1 1 44 64 -7.875 -0.022 -6.529 0.303 -1.445 0.882 -0.847 D 138 136 3 139 3 0 0 43 62 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 39 - A - - - ML 140 139 3 142 3 1 1 43 62 -7.875 -0.022 -6.529 1.677 -2.192 -1.842 -1.718 D 141 139 3 142 3 0 0 42 61 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 40 - G - - - ML 143 142 3 145 3 1 1 42 61 -7.875 -0.022 -6.529 -1.390 -2.579 1.676 -1.965 D 144 142 3 145 3 0 0 41 60 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 41 - U - - - ML 146 145 3 148 3 1 1 41 60 -7.875 -0.022 -6.529 -1.323 -1.348 -2.048 1.568 D 147 145 3 148 3 0 0 40 59 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 42 - A - - - ML 149 148 3 151 5 1 1 40 59 -7.016 -0.041 -6.831 -7.044 -7.935 1.677 -2.192 -1.842 -1.718 D 150 148 3 151 5 0 0 39 58 -4.959 -0.803 -4.221 -2.596 -2.508 IL 151 151 3 151 5 1 1 40 60 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 43 66 C G - - MP 152 151 3 156 6 2 2 39 58 -9.071 -9.011 -0.022 -7.787 -8.067 -8.462 -4.372 -4.261 -4.091 -0.510 -2.849 -4.526 3.492 -3.641 -4.135 -0.243 -4.414 -2.206 0.682 -4.452 -0.552 -2.981 ML 153 151 3 156 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 3 156 6 1 1 37 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 3 156 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 38 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 44 65 G C - - MP 158 157 6 162 6 2 2 37 56 -9.071 -9.011 -0.022 -7.787 -8.067 -8.462 -4.571 -3.013 -4.656 0.312 -4.992 -4.626 -0.399 -4.885 -4.214 3.594 -4.564 -0.706 -0.789 -4.355 -2.427 -3.536 ML 159 157 6 162 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 35 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 33 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 36 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 45 64 c g - - MP 164 163 6 168 6 2 2 35 54 -9.071 -9.011 -0.022 -7.787 -8.067 -8.462 -3.616 -3.533 -3.492 0.197 -2.444 -4.062 2.802 -3.151 -3.507 0.473 -3.894 -1.510 2.066 -3.752 -0.119 -2.377 ML 165 163 6 168 6 1 1 34 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 32 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 34 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 46 63 C G - - MP 170 169 6 174 4 2 2 33 52 -6.852 -7.059 -0.057 -5.473 -4.372 -4.261 -4.091 -0.510 -2.849 -4.526 3.492 -3.641 -4.135 -0.243 -4.414 -2.206 0.682 -4.452 -0.552 -2.981 ML 171 169 6 174 4 1 1 33 53 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 47 - G - - - ML 176 175 6 178 3 1 1 30 49 -7.875 -0.022 -6.529 -1.390 -2.579 1.676 -1.965 D 177 175 6 178 3 0 0 29 48 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 48 - U - - - ML 179 178 3 181 3 1 1 29 48 -7.875 -0.022 -6.529 -1.323 -1.348 -2.048 1.568 D 180 178 3 181 3 0 0 28 47 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 49 - A - - - ML 182 181 3 184 3 1 1 28 47 -7.875 -0.022 -6.529 1.677 -2.192 -1.842 -1.718 D 183 181 3 184 3 0 0 27 46 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 50 - A - - - ML 185 184 3 187 3 1 1 27 46 -7.875 -0.022 -6.529 1.677 -2.192 -1.842 -1.718 D 186 184 3 187 3 0 0 26 45 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 51 - G - - - ML 188 187 3 190 3 1 1 26 45 -7.875 -0.022 -6.529 -1.390 -2.579 1.676 -1.965 D 189 187 3 190 3 0 0 25 44 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 52 - A - - - ML 191 190 3 193 3 1 1 25 44 -7.875 -0.022 -6.529 1.677 -2.192 -1.842 -1.718 D 192 190 3 193 3 0 0 24 43 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 53 - c - - - ML 194 193 3 196 3 1 1 24 42 -7.875 -0.022 -6.529 -0.676 0.703 -1.460 0.467 D 195 193 3 196 3 0 0 23 42 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 54 - g - - - ML 197 196 3 199 3 1 1 22 41 -7.875 -0.022 -6.529 -0.305 -0.178 0.620 -0.377 D 198 196 3 199 3 0 0 21 40 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 55 - c - - - ML 200 199 3 202 3 1 1 21 40 -7.875 -0.022 -6.529 -0.342 0.503 -0.076 -0.242 D 201 199 3 202 3 0 0 20 39 -6.174 -1.687 -0.566 IL 202 202 3 202 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 56 - A - - - ML 203 202 3 205 3 1 1 20 39 -7.875 -0.022 -6.529 1.677 -2.192 -1.842 -1.718 D 204 202 3 205 3 0 0 19 38 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 57 - A - - - ML 206 205 3 208 3 1 1 19 38 -7.875 -0.022 -6.529 1.677 -2.192 -1.842 -1.718 D 207 205 3 208 3 0 0 18 37 -6.174 -1.687 -0.566 IL 208 208 3 208 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 58 - G - - - ML 209 208 3 211 3 1 1 18 36 -7.875 -0.022 -6.529 -1.390 -2.579 1.676 -1.965 D 210 208 3 211 3 0 0 17 36 -6.174 -1.687 -0.566 IL 211 211 3 211 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 59 - C - - - ML 212 211 3 214 3 1 1 16 35 -7.875 -0.022 -6.529 -1.527 1.561 -2.343 -0.985 D 213 211 3 214 3 0 0 16 34 -6.174 -1.687 -0.566 IL 214 214 3 214 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 60 - g - - - ML 215 214 3 217 3 1 1 15 33 -7.875 -0.022 -6.529 0.303 -1.445 0.882 -0.847 D 216 214 3 217 3 0 0 15 33 -6.174 -1.687 -0.566 IL 217 217 3 217 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 61 - C - - - ML 218 217 3 220 3 1 1 13 32 -7.875 -0.022 -6.529 -1.527 1.561 -2.343 -0.985 D 219 217 3 220 3 0 0 13 32 -6.174 -1.687 -0.566 IL 220 220 3 220 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 62 - a - - - ML 221 220 3 223 2 1 1 1 1 * 0.000 0.800 -0.882 -1.010 0.286 D 222 220 3 223 2 0 0 0 0 * 0.000 IL 223 223 3 223 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 66 ] - - - - - - E 224 223 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Ocean-V ACC RF01714 DESC Ocean-V RNA LENG 72 MAXL 159 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:37:26 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 3 EFFN 2.124023 CKSUM 2700672833 STATS LOCAL MSV -8.5888 0.71887 STATS LOCAL VITERBI -9.0772 0.71887 STATS LOCAL FORWARD -3.3649 0.71887 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25290 1.49395 1.46836 1.34886 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 0.00000 * 1 0.17423 3.13161 2.86633 2.82449 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 2 1.95256 0.84169 2.50962 1.06187 2 c - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 3 1.20267 1.99107 2.19254 0.79534 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 4 1.95256 0.84169 2.50962 1.06187 4 c - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 5 2.50959 2.49078 3.02266 0.23930 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 6 2.50959 2.49078 3.02266 0.23930 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 7 2.50959 2.49078 3.02266 0.23930 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 8 1.20267 1.99107 2.19254 0.79534 8 u - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 9 2.50959 2.49078 3.02266 0.23930 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 10 2.52227 3.13564 0.18600 3.07954 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 11 0.96864 2.36493 0.86475 2.25105 11 g - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 12 2.47917 0.99174 2.21605 0.82962 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 13 2.85311 1.81644 2.58906 0.35007 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 14 2.85194 1.81640 2.58856 0.35023 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 15 3.08629 0.26856 2.84795 2.02581 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 16 0.38938 2.64290 1.73985 2.57938 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 17 2.50959 2.49077 3.02266 0.23930 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 18 2.50959 2.49078 3.02266 0.23930 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 19 2.71576 0.22971 3.28996 2.28451 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 20 0.17423 3.13161 2.86633 2.82449 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 21 1.09954 2.46175 0.79127 2.05243 21 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 22 2.50959 2.49078 3.02266 0.23930 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 23 2.80643 2.02140 2.45567 0.32669 23 U - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 24 2.30144 3.01455 0.23243 2.84371 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 25 0.39793 2.76978 1.65323 2.60121 25 A - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 26 0.39796 2.76967 1.65322 2.60108 26 A - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 27 0.94558 2.37997 0.88502 2.24162 27 g - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 28 2.47631 0.99124 2.17496 0.84114 28 u - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 29 3.25797 0.22309 2.95334 2.21340 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 30 2.71576 0.22971 3.28996 2.28451 30 C - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 31 2.50959 2.49078 3.02266 0.23930 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 32 2.71576 0.22971 3.28996 2.28451 32 C - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 33 0.17423 3.13161 2.86633 2.82449 33 A - - - 1.38629 1.38629 1.38629 1.38629 0.27609 1.51053 3.88907 0.17606 1.82367 1.09861 0.40547 34 0.70544 1.52086 2.19266 1.73745 35 a - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 35 2.58863 3.45061 0.16884 3.02601 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 36 1.95256 0.84169 2.50962 1.06187 37 c - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 37 1.18148 2.49747 0.71955 2.08821 38 g - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 38 0.17423 3.13161 2.86633 2.82449 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 39 2.58863 3.45061 0.16884 3.02601 40 G - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 40 2.50959 2.49078 3.02266 0.23930 41 U - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 41 0.17423 3.13161 2.86633 2.82449 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 42 3.09041 0.26805 2.84983 2.02651 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 43 2.51764 3.13042 0.18714 3.07219 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 44 2.50769 0.74910 2.24640 1.07888 45 c - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 45 3.08764 0.26839 2.84856 2.02604 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 46 2.58863 3.45061 0.16884 3.02601 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 47 2.50959 2.49077 3.02266 0.23930 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 48 0.17423 3.13161 2.86633 2.82449 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 49 0.17423 3.13161 2.86633 2.82449 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 50 2.58863 3.45061 0.16884 3.02601 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 51 0.17423 3.13161 2.86633 2.82449 52 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 52 1.95256 0.84169 2.50962 1.06187 53 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 53 1.67214 1.49881 0.88830 1.72932 54 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 54 1.69727 0.97749 1.41622 1.61983 55 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 55 0.17423 3.13161 2.86633 2.82449 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 56 0.17423 3.13161 2.86633 2.82449 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 57 2.58863 3.45061 0.16884 3.02601 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 58 2.71576 0.22971 3.28996 2.28451 59 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 59 1.18148 2.49747 0.71955 2.08821 60 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 60 2.71576 0.22971 3.28996 2.28451 61 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 61 0.80155 2.05236 2.14710 1.18380 62 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 62 2.30164 3.01481 0.23236 2.84402 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 63 1.22964 2.41088 0.66448 2.26990 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 64 3.27209 0.22165 2.95943 2.21613 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 65 2.29861 3.01086 0.23335 2.83915 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 66 2.58863 3.45061 0.16884 3.02601 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 67 0.17423 3.13161 2.86633 2.82449 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 68 0.17423 3.13161 2.86633 2.82449 69 A - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 69 0.17423 3.13161 2.86633 2.82449 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 70 0.65453 2.40555 1.35903 2.01600 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 71 2.71576 0.22971 3.28996 2.28451 72 C - - : 1.38629 1.38629 1.38629 1.38629 0.04179 3.88907 3.88907 1.46634 0.26236 1.09861 0.40547 72 2.50959 2.49078 3.02266 0.23930 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.02111 3.86839 * 1.46634 0.26236 0.00000 * //