INFERNAL1/a [1.1.4 | Dec 2020] NAME SAM-II_long_loops ACC RF01726 DESC SAM-II long loop STATES 184 NODES 54 CLEN 60 W 177 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:38:07 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 126 EFFN 5.648621 CKSUM 3138906500 NULL 0.000 0.000 0.000 0.000 GA 44.00 TC 44.70 NC 41.50 EFP7GF -13.0208 0.71910 ECMLC 0.60799 -7.16253 2.42884 1600000 409019 0.002934 ECMGC 0.37111 -16.99392 -2.25624 1600000 94918 0.004214 ECMLI 0.57089 -5.54402 3.52593 1600000 212783 0.005640 ECMGI 0.39719 -13.05330 0.08049 1600000 73719 0.005426 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 177 313 -7.988 -8.195 -0.026 -6.609 IL 1 1 2 1 4 1 23 179 315 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 178 314 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 22 177 313 -8.950 -0.010 -7.604 0.630 -0.351 -0.852 0.157 D 4 2 3 5 3 0 18 175 310 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 22 177 313 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - u - - - ML 6 5 3 8 3 1 22 176 312 -8.950 -0.048 -5.033 0.391 -0.555 -0.835 0.533 D 7 5 3 8 3 0 17 174 310 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 21 176 312 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 1 21 175 311 -8.913 -0.054 -4.851 0.551 -0.843 -1.014 0.568 D 10 8 3 11 3 0 17 173 309 -6.725 -2.238 -0.361 IL 11 11 3 11 3 1 21 176 311 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 1 20 174 310 -8.870 -0.011 -7.524 0.750 -0.553 -0.825 0.100 D 13 11 3 14 3 0 16 172 308 -7.166 -0.614 -1.558 IL 14 14 3 14 3 1 19 175 310 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 19 173 309 -5.096 -0.050 -7.611 0.888 -0.307 -1.156 -0.165 D 16 14 3 17 3 0 14 171 307 -5.620 -0.734 -1.403 IL 17 17 3 17 3 1 18 173 309 -2.156 -0.458 -4.394 0.000 0.000 0.000 0.000 [ MATR 6 ] - 109 - u - - MR 18 17 3 20 3 1 19 172 308 -9.293 -0.010 -7.611 0.076 -0.239 -0.672 0.556 D 19 17 3 20 3 0 12 170 305 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 17 172 308 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 108 - u - - MR 21 20 3 23 3 1 18 171 307 -9.293 -0.010 -7.611 -0.369 0.309 -0.737 0.472 D 22 20 3 23 3 0 11 169 304 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 16 171 307 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 107 - u - - MR 24 23 3 26 3 1 17 170 306 -9.293 -0.010 -7.611 0.395 -0.466 -0.946 0.528 D 25 23 3 26 3 0 11 168 303 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 16 170 306 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 106 - u - - MR 27 26 3 29 3 1 16 169 305 -9.293 -0.010 -7.611 0.390 -0.838 -0.509 0.513 D 28 26 3 29 3 0 10 167 302 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 15 169 305 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 105 - u - - MR 30 29 3 32 3 1 15 168 304 -9.293 -0.010 -7.611 0.119 -0.323 -0.769 0.612 D 31 29 3 32 3 0 9 166 301 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 14 168 304 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 104 - g - - MR 33 32 3 35 3 1 15 167 303 -9.293 -0.010 -7.611 -0.372 -1.219 0.904 -0.111 D 34 32 3 35 3 0 8 165 300 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 13 167 303 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 103 - A - - MR 36 35 3 38 3 1 14 166 302 -9.293 -0.010 -7.611 1.131 -0.855 -1.391 -0.192 D 37 35 3 38 3 0 7 164 299 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 12 166 302 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 102 - C - - MR 39 38 3 41 3 1 13 165 301 -9.293 -0.010 -7.611 -0.662 1.016 -1.672 0.045 D 40 38 3 41 3 0 6 163 298 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 11 165 301 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 101 - G - - MR 42 41 3 44 3 1 12 164 300 -9.293 -0.010 -7.611 0.252 -1.913 1.106 -1.354 D 43 41 3 44 3 0 5 162 298 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 11 164 300 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 100 - A - - MR 45 44 3 47 3 1 11 163 299 -9.293 -0.010 -7.611 1.574 -2.166 -2.248 -0.762 D 46 44 3 47 3 0 5 161 297 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 10 163 299 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 99 - A - - MR 48 47 3 50 3 1 10 162 298 -9.293 -0.010 -7.611 1.930 -4.262 -3.740 -3.973 D 49 47 3 50 3 0 4 160 296 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 9 162 298 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 98 - A - - MR 51 50 3 53 3 1 9 161 297 -9.293 -0.010 -7.611 1.930 -4.262 -3.740 -3.973 D 52 50 3 53 3 0 3 159 295 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 8 161 297 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 97 - U - - MR 54 53 3 56 3 1 9 160 296 -9.293 -0.010 -7.611 -3.304 -3.019 -4.088 1.894 D 55 53 3 56 3 0 3 158 294 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 7 160 296 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 96 - C - - MR 57 56 3 59 3 1 8 159 295 -6.294 -0.026 -7.611 -3.918 1.914 -4.618 -3.000 D 58 56 3 59 3 0 2 157 293 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 7 159 295 -2.023 -0.511 -4.261 0.000 0.000 0.000 0.000 [ MATR 20 ] - 94 - G - - MR 60 59 3 62 3 1 7 158 294 -9.293 -0.010 -7.611 -3.402 -4.829 1.931 -4.143 D 61 59 3 62 3 0 1 156 292 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 6 158 294 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 93 - U - - MR 63 62 3 65 3 1 6 157 293 -9.293 -0.010 -7.611 -1.474 -1.457 -2.639 1.639 D 64 62 3 65 3 0 1 155 291 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 5 157 293 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 92 - A - - MR 66 65 3 68 3 1 5 156 292 -9.293 -0.010 -7.611 1.012 -1.407 -0.254 -0.380 D 67 65 3 68 3 0 0 154 290 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 4 156 292 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 91 - A - - MR 69 68 3 71 3 1 4 155 291 -9.293 -0.010 -7.611 1.930 -4.262 -3.740 -3.973 D 70 68 3 71 3 0 0 153 289 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 3 155 291 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 90 - A - - MR 72 71 3 74 3 1 3 154 290 -9.293 -0.010 -7.611 1.930 -4.262 -3.740 -3.973 D 73 71 3 74 3 0 0 152 288 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 3 154 290 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 89 - A - - MR 75 74 3 77 3 1 2 153 289 -9.293 -0.085 -4.171 1.817 -3.040 -2.947 -2.143 D 76 74 3 77 3 0 0 151 287 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 2 154 289 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 88 - A - - MR 78 77 3 80 3 1 2 152 288 -9.219 -0.120 -3.681 1.834 -3.133 -2.976 -2.365 D 79 77 3 80 3 0 0 151 287 -7.242 -2.420 -0.310 IR 80 80 3 80 3 1 2 153 289 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 87 - A - - MR 81 80 3 83 3 1 1 151 287 -9.110 -0.339 -2.267 1.694 -1.761 -2.324 -1.886 D 82 80 3 83 3 0 0 151 287 -7.929 -3.107 -0.185 IR 83 83 3 83 3 1 2 152 288 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 86 - A - - MR 84 83 3 86 3 1 1 150 286 -1.880 -0.553 -4.423 1.858 -3.289 -2.834 -2.926 D 85 83 3 86 3 0 0 151 287 -1.578 -0.858 -3.142 IR 86 86 3 86 3 1 3 159 295 -0.196 -3.006 -8.557 0.000 0.000 0.000 0.000 [ MATR 29 ] - 60 - A - - MR 87 86 3 89 3 1 2 128 248 -9.253 -0.010 -7.571 1.150 -1.282 -1.158 -0.119 D 88 86 3 89 3 0 0 127 246 -6.918 -0.888 -1.148 IR 89 89 3 89 3 1 1 129 248 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 59 - u - - MR 90 89 3 92 5 1 1 127 247 -7.986 -0.092 -4.359 -7.138 -8.905 0.214 -0.722 -0.423 0.573 D 91 89 3 92 5 0 0 125 245 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 127 247 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 7 58 a u - - MP 93 92 3 97 6 2 2 126 246 -9.553 -9.492 -0.015 -8.268 -8.548 -8.943 -0.691 -1.572 0.299 1.601 -1.589 -2.721 1.494 -1.462 -1.683 0.798 -2.510 -0.538 1.322 -1.844 -0.069 -1.090 ML 94 92 3 97 6 1 1 125 244 -6.849 -7.195 -0.723 -1.603 -7.044 -4.574 1.067 -0.938 -0.684 -0.396 MR 95 92 3 97 6 1 1 124 244 -7.034 -5.763 -1.533 -5.741 -0.875 -3.955 0.515 -0.487 -0.202 -0.018 D 96 92 3 97 6 0 0 119 239 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 126 245 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 125 245 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 8 57 G C - - MP 99 98 6 103 6 2 2 124 244 -9.596 -9.535 -0.015 -8.312 -8.592 -8.987 -5.914 -3.786 -6.159 0.061 -7.109 -5.329 -2.103 -6.510 -5.159 3.795 -5.443 -1.519 -2.396 -5.320 -4.210 -5.019 ML 100 98 6 103 6 1 1 122 242 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 122 242 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 118 238 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 124 243 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 123 243 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 9 56 a u - - MP 105 104 6 109 6 2 2 122 242 -9.596 -9.535 -0.015 -8.312 -8.592 -8.987 -3.443 -3.006 -3.544 2.397 -3.408 -4.483 0.786 -3.671 -3.545 1.282 -4.075 -0.088 2.095 -3.738 -1.156 -2.507 ML 106 104 6 109 6 1 1 120 240 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 120 240 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 117 237 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 122 241 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 121 241 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 10 55 G C - - MP 111 110 6 115 6 2 2 121 240 -9.596 -9.535 -0.015 -8.312 -8.592 -8.987 -6.562 -4.004 -7.128 -1.122 -7.696 -5.369 -2.614 -7.300 -5.356 3.881 -5.604 -1.818 -2.975 -5.603 -4.801 -5.981 ML 112 110 6 115 6 1 1 119 239 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 118 238 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 116 236 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 120 240 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 120 239 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 11 54 G C - - MP 117 116 6 121 4 2 2 119 238 -7.988 -4.302 -0.097 -6.609 -6.562 -4.004 -7.128 -1.122 -7.696 -5.369 -2.614 -7.300 -5.356 3.881 -5.604 -1.818 -2.975 -5.603 -4.801 -5.981 ML 118 116 6 121 4 1 1 117 237 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 116 236 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 115 235 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 118 238 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 118 238 -1.716 -0.624 -4.416 0.000 0.000 0.000 0.000 [ MATL 36 ] 12 - A - - - ML 123 122 6 125 3 1 1 116 236 -8.950 -0.017 -6.696 1.930 -4.262 -3.740 -3.973 D 124 122 6 125 3 0 0 114 234 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 117 237 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 13 - a - - - ML 126 125 3 128 3 1 1 115 235 -8.944 -0.010 -7.598 0.671 -0.087 -0.804 -0.163 D 127 125 3 128 3 0 0 113 233 -6.288 -1.462 -0.680 IL 128 128 3 128 3 1 1 116 236 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 14 - a - - - ML 129 128 3 131 3 1 1 114 234 -8.950 -0.010 -7.604 0.656 -0.905 -0.140 -0.025 D 130 128 3 131 3 0 0 112 232 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 115 235 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 15 - G - - - ML 132 131 3 134 3 1 1 113 233 -9.293 -0.010 -7.611 -1.412 -3.577 1.774 -3.049 D 133 131 3 134 3 0 0 112 232 -5.620 -0.734 -1.403 IL 134 134 3 134 3 1 1 114 234 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 52 - A - - MR 135 134 3 137 3 1 1 112 232 -5.556 -0.039 -7.611 1.906 -3.957 -3.182 -3.703 D 136 134 3 137 3 0 0 110 230 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 113 233 -2.093 -0.482 -4.331 0.000 0.000 0.000 0.000 [ MATR 41 ] - 50 - A - - MR 138 137 3 140 3 1 1 111 231 -9.293 -0.010 -7.611 1.817 -3.303 -1.980 -3.033 D 139 137 3 140 3 0 0 109 229 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 112 232 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 49 - C - - MR 141 140 3 143 3 1 1 110 230 -9.293 -0.010 -7.611 -3.918 1.914 -4.618 -3.000 D 142 140 3 143 3 0 0 108 228 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 111 231 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 48 - G - - MR 144 143 3 146 3 1 1 109 229 -9.293 -0.010 -7.611 -3.402 -4.829 1.931 -4.143 D 145 143 3 146 3 0 0 107 227 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 110 230 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 47 - U - - MR 147 146 3 149 5 1 1 108 228 -7.986 -0.021 -7.801 -8.013 -8.905 -3.304 -3.019 -4.088 1.894 D 148 146 3 149 5 0 0 106 226 -5.352 -0.707 -2.978 -4.409 -2.404 IR 149 149 3 149 5 1 1 108 228 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 16 46 A U - - MP 150 149 3 154 6 2 2 108 227 -9.596 -9.535 -0.015 -8.312 -8.592 -8.987 -5.650 -4.384 -5.287 3.864 -6.826 -8.141 -2.434 -5.217 -5.411 -0.957 -6.030 -1.674 -2.797 -6.898 -4.348 -4.216 ML 151 149 3 154 6 1 1 104 224 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 3 154 6 1 1 104 223 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 3 154 6 0 0 98 218 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 106 226 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 106 226 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 17 45 U A - - MP 156 155 6 160 6 2 2 106 225 -9.596 -9.535 -0.015 -8.312 -8.592 -8.987 -4.392 -4.396 -4.270 -0.841 -3.274 -4.831 0.951 -3.975 -4.301 -0.736 -4.683 -2.511 3.193 1.349 -1.020 -3.236 ML 157 155 6 160 6 1 1 101 221 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 100 220 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 95 215 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 104 224 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 104 224 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 18 44 U G - - MP 162 161 6 166 4 2 2 104 223 -7.988 -1.933 -0.466 -6.609 -5.630 -5.554 -5.089 -1.806 -3.585 -5.365 0.712 -4.429 -5.137 -1.835 -5.329 -3.493 -0.266 -5.622 3.622 -1.932 ML 163 161 6 166 4 1 1 96 216 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 95 215 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 93 213 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 104 223 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 110 230 -0.222 -2.858 -7.783 0.000 0.000 0.000 0.000 [ MATL 48 ] 19 - U - - - ML 168 167 6 170 3 1 1 17 35 -8.950 -0.010 -7.604 -3.304 -3.019 -4.088 1.894 D 169 167 6 170 3 0 0 17 35 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 20 - G - - - ML 171 170 3 173 3 1 1 15 34 -8.950 -0.010 -7.604 -3.402 -4.829 1.931 -4.143 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 21 - A - - - ML 174 173 3 176 3 1 1 14 33 -8.950 -0.010 -7.604 1.182 -0.659 -1.057 -0.695 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 22 - c - - - ML 177 176 3 179 3 1 1 12 31 -8.950 -0.010 -7.604 -0.731 0.969 -0.302 -0.669 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 23 - U - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -0.478 -1.036 -2.015 1.349 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SAM-II_long_loops ACC RF01726 DESC SAM-II long loop LENG 60 MAXL 222 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:38:07 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 126 EFFN 7.086731 CKSUM 3138906500 STATS LOCAL MSV -7.9545 0.71910 STATS LOCAL VITERBI -8.6772 0.71910 STATS LOCAL FORWARD -4.1579 0.71910 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.04901 1.68970 1.52116 1.39965 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 0.00000 * 1 0.93170 1.63262 2.00853 1.28549 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 2 1.10457 1.79379 1.99243 1.00524 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.04619 4.70552 3.32151 1.46634 0.26236 1.09861 0.40547 3 0.98612 2.02002 2.13351 0.97842 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.05122 4.67809 3.20306 1.46634 0.26236 1.79024 0.18263 4 0.84412 1.78550 1.98825 1.32646 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.01938 4.64625 4.64625 1.46634 0.26236 0.24033 1.54351 5 0.74360 1.59478 2.24882 1.53190 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.05369 3.23049 4.36318 0.40788 1.09379 1.09861 0.40547 6 1.03132 1.51011 1.75962 1.38442 7 a - - < 1.38629 1.38629 1.38629 1.38629 0.01832 4.70182 4.70182 1.46634 0.26236 0.88386 0.53305 7 2.64381 4.09080 0.11319 3.95284 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 8 0.97088 2.32212 1.59523 1.13843 9 a - - < 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 9 3.48849 4.47036 0.05557 4.41718 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 10 3.50314 4.49459 0.05441 4.44982 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 11 0.03651 4.62823 4.25421 4.43317 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.02316 4.70552 4.27987 1.46634 0.26236 1.09861 0.40547 12 0.90244 1.42852 1.97119 1.53496 13 a - - - 1.38629 1.38629 1.38629 1.38629 0.01834 4.70071 4.70071 1.46634 0.26236 0.83582 0.56831 13 0.91360 2.05603 1.47398 1.41903 14 a - - - 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 14 2.43072 4.07837 0.13845 3.71398 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 15 0.06683 4.53185 3.19045 4.36396 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 16 3.52631 2.24220 3.35939 0.18681 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 17 3.92596 2.37067 3.81255 0.14530 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 18 3.95798 3.72925 4.50654 0.05567 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 19 3.99363 5.01049 0.03683 4.50473 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 20 0.53154 1.85455 2.17367 1.95179 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 21 1.99190 0.66021 1.58173 1.95755 22 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 22 1.75582 2.17929 2.94484 0.41324 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.33333 1.29310 4.70552 2.29273 0.10646 1.09861 0.40547 23 2.97771 4.01532 0.11391 3.25146 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 24 0.46127 1.57324 2.08133 3.28654 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 25 4.61641 3.61539 4.35714 0.05088 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 26 3.95798 3.72925 4.50654 0.05567 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 27 3.99363 5.01049 0.03683 4.50473 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 28 4.37994 0.04546 4.81950 3.73624 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 29 0.10854 3.89757 2.83307 3.74090 50 A - - - 1.38629 1.38629 1.38629 1.38629 0.04059 3.48255 4.70552 0.51119 0.91574 1.09861 0.40547 30 0.05102 4.38540 3.78649 4.22613 52 A - - - 1.38629 1.38629 1.38629 1.38629 0.06895 2.85449 4.70552 0.28909 1.38208 1.09861 0.40547 31 4.56450 0.06582 4.39616 3.19514 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 32 4.56295 0.06586 4.39529 3.19485 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 33 1.20416 1.90633 2.15098 0.83227 56 u - - > 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 34 4.26467 0.12027 4.07790 2.49718 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.07117 4.70552 2.81926 1.46634 0.26236 1.09861 0.40547 35 1.44937 1.89692 1.11771 1.24402 58 g - - > 1.38629 1.38629 1.38629 1.38629 0.01924 4.65359 4.65359 1.46634 0.26236 0.26488 1.45799 36 1.23867 1.92285 1.67885 0.97431 59 u - - : 1.38629 1.38629 1.38629 1.38629 0.04980 4.70552 3.23049 1.46634 0.26236 1.09861 0.40547 37 0.55351 2.36422 2.25566 1.48612 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.84870 1.01915 1.55529 2.28955 0.10682 0.37675 1.15863 38 0.07254 3.95553 3.61737 3.73084 86 A - - : 1.38629 1.38629 1.38629 1.38629 0.16525 4.48780 1.95845 1.46634 0.26236 0.22696 1.59431 39 0.18390 2.66713 3.18790 2.85991 87 A - - : 1.38629 1.38629 1.38629 1.38629 0.02105 4.56444 4.56444 1.46634 0.26236 0.62390 0.76754 40 0.09543 3.76522 3.67786 3.15651 88 A - - : 1.38629 1.38629 1.38629 1.38629 0.01934 4.64834 4.64834 1.46634 0.26236 0.24682 1.51997 41 0.10738 3.69350 3.65317 2.97557 89 A - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 42 0.03651 4.62823 4.25421 4.43317 90 A - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 43 0.03651 4.62823 4.25421 4.43317 91 A - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 44 0.65447 2.45872 1.56047 1.68903 92 A - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 45 2.51932 2.49405 3.41364 0.21817 93 U - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 46 3.99363 5.01049 0.03683 4.50473 94 G - - : 1.38629 1.38629 1.38629 1.38629 0.03086 3.84699 4.70552 0.70338 0.68302 1.09861 0.40547 47 4.37994 0.04546 4.81950 3.73624 96 C - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 48 3.95798 3.72925 4.50654 0.05567 97 U - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 49 0.03651 4.62823 4.25421 4.43317 98 A - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 50 0.03651 4.62823 4.25421 4.43317 99 A - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 51 0.26328 3.07018 3.14503 1.95195 100 A - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 52 1.22012 2.83958 0.57774 2.46289 101 G - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 53 1.91026 0.63638 2.64245 1.38005 102 C - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 54 0.56703 2.01709 2.44221 1.54748 103 A - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 55 1.69988 2.30567 0.71202 1.48302 104 g - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 56 1.30749 1.61700 1.93821 0.94921 105 u - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 57 1.10684 2.01444 1.74565 1.01757 106 u - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 58 1.10139 1.72587 2.07836 1.00940 107 u - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 59 1.68888 1.14265 1.90890 1.05539 108 u - - : 1.38629 1.38629 1.38629 1.38629 0.01826 4.70552 4.70552 1.46634 0.26236 1.09861 0.40547 60 1.34140 1.55239 1.86355 0.98978 109 u - - : 1.38629 1.38629 1.38629 1.38629 0.00917 4.69643 * 1.46634 0.26236 0.00000 * //