INFERNAL1/a [1.1.4 | Dec 2020] NAME msiK ACC RF01747 DESC msiK RNA STATES 184 NODES 49 CLEN 60 W 79 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:39:20 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 120 EFFN 7.928467 CKSUM 1954512246 NULL 0.000 0.000 0.000 0.000 GA 33.00 TC 34.60 NC 29.70 EFP7GF -15.5773 0.71926 ECMLC 0.82339 -6.03806 1.30765 1600000 508101 0.002362 ECMGC 0.48197 -17.47352 -5.92291 1600000 104666 0.003822 ECMLI 0.68407 -4.88406 2.37695 1600000 172325 0.006964 ECMGI 0.54277 -13.52340 -3.72009 1600000 81827 0.004888 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 79 102 -8.383 -8.590 -0.087 -4.241 IL 1 1 2 1 4 1 15 83 105 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 14 82 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 1 13 79 102 -9.268 -0.008 -7.922 -0.277 -0.296 0.506 -0.089 D 4 2 3 5 3 0 10 78 100 -7.207 -0.694 -1.415 IL 5 5 3 5 3 1 13 81 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - g - - - ML 6 5 3 8 3 1 13 78 101 -9.327 -0.008 -7.981 -0.162 -0.387 0.605 -0.285 D 7 5 3 8 3 0 9 77 99 -6.301 -1.814 -0.509 IL 8 8 3 8 3 1 12 80 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 12 77 100 -9.327 -0.008 -7.981 -0.100 0.069 0.054 -0.029 D 10 8 3 11 3 0 8 76 98 -6.301 -1.814 -0.509 IL 11 11 3 11 3 1 11 79 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 11 76 99 -9.327 -0.185 -3.071 0.235 -0.199 -0.390 0.249 D 13 11 3 14 3 0 8 75 97 -6.301 -1.814 -0.509 IL 14 14 3 14 3 1 11 78 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 1 10 75 98 -9.151 -0.057 -4.767 0.411 -0.532 0.277 -0.384 D 16 14 3 17 3 0 7 73 96 -8.110 -3.623 -0.128 IL 17 17 3 17 3 1 10 77 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 9 74 97 -9.104 -0.143 -3.436 0.265 -0.710 -0.198 0.396 D 19 17 3 20 3 0 7 73 95 -8.346 -3.859 -0.108 IL 20 20 3 20 3 1 10 76 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 1 9 73 96 -8.971 -0.178 -3.134 0.069 0.416 -0.538 -0.107 D 22 20 3 23 3 0 7 73 95 -8.828 -4.341 -0.076 IL 23 23 3 23 3 1 9 75 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - a - - - ML 24 23 3 26 3 1 8 72 95 -2.711 -1.089 -1.406 0.237 -0.267 0.158 -0.192 D 25 23 3 26 3 0 7 73 95 -0.411 -2.682 -3.438 IL 26 26 3 26 3 1 8 73 96 -1.236 -1.185 -2.882 0.000 0.000 0.000 0.000 [ MATL 9 ] 13 - u - - - ML 27 26 3 29 3 1 6 70 91 -9.035 -1.194 -0.834 -0.416 0.059 -0.452 0.563 D 28 26 3 29 3 0 7 69 90 -8.270 -0.200 -2.988 IL 29 29 3 29 3 1 9 71 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 68 - a - - MR 30 29 3 32 3 1 8 69 90 -8.960 -0.012 -7.277 0.725 -0.410 -0.960 0.111 D 31 29 3 32 3 0 5 67 89 -9.557 -1.403 -0.689 IR 32 32 3 32 3 1 8 70 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 67 - a - - MR 33 32 3 35 3 1 7 68 89 -9.272 -0.010 -7.589 0.653 -0.528 -0.966 0.290 D 34 32 3 35 3 0 4 67 88 -8.956 -1.764 -0.507 IR 35 35 3 35 3 1 7 69 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 66 - a - - MR 36 35 3 38 3 1 6 67 88 -9.395 -0.009 -7.713 0.838 -0.441 -1.044 -0.014 D 37 35 3 38 3 0 3 66 87 -8.565 -0.229 -2.795 IR 38 38 3 38 3 1 6 68 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 65 - A - - MR 39 38 3 41 3 1 5 66 87 -9.664 -0.008 -7.982 1.256 -0.855 -1.194 -0.684 D 40 38 3 41 3 0 1 64 86 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 5 67 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 64 - a - - MR 42 41 3 44 3 1 4 65 86 -9.664 -0.008 -7.982 0.836 -0.704 -1.018 0.148 D 43 41 3 44 3 0 0 63 85 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 4 66 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 63 - a - - MR 45 44 3 47 3 1 3 64 85 -9.664 -0.008 -7.982 0.797 -0.743 -0.245 -0.284 D 46 44 3 47 3 0 0 62 84 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 3 65 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 62 - g - - MR 48 47 3 50 3 1 2 63 84 -9.664 -0.008 -7.982 0.428 -1.545 0.861 -1.013 D 49 47 3 50 3 0 0 61 82 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 2 64 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 61 - A - - MR 51 50 3 53 5 1 1 62 83 -1.143 -1.123 -8.160 -8.372 -3.615 1.152 -2.209 0.153 -1.154 D 52 50 3 53 5 0 0 58 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 3 62 83 -1.257 -0.971 -5.123 -4.691 -7.906 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 56 C G - - MP 54 53 3 58 6 2 4 57 76 -9.691 -9.631 -0.027 -6.406 -8.687 -9.082 -5.456 -5.492 -5.037 -1.566 -3.560 -5.367 3.555 -4.404 -5.069 -1.423 -5.316 -3.465 0.906 -5.438 0.257 -3.861 ML 55 53 3 58 6 1 1 55 74 -6.718 -7.064 -0.815 -1.473 -6.914 -4.444 0.108 -0.294 -0.122 0.248 MR 56 53 3 58 6 1 1 55 74 -7.450 -6.179 -0.973 -6.158 -1.291 -4.371 1.010 -0.876 -0.620 -0.338 D 57 53 3 58 6 0 0 54 73 -10.382 -9.080 -0.714 -5.559 -4.371 -1.652 IL 58 58 5 58 6 1 1 56 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 56 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 55 c g - - MP 60 59 6 64 6 2 3 55 74 -9.815 -9.754 -0.076 -5.056 -6.279 -7.395 -2.833 -4.240 -4.292 -0.380 -3.303 -4.995 2.727 -3.968 -4.252 -0.211 -4.714 -2.120 1.831 -4.512 1.707 -3.107 ML 61 59 6 64 6 1 1 53 72 -6.484 -6.830 -1.021 -1.239 -6.680 -4.210 0.758 -0.655 -0.371 -0.151 MR 62 59 6 64 6 1 1 53 72 -7.054 -5.783 -1.496 -5.761 -0.895 -3.975 0.360 -0.535 0.109 -0.077 D 63 59 6 64 6 0 0 51 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 54 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 54 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 54 u a - - MP 66 65 6 70 6 2 4 53 72 -9.768 -9.708 -0.040 -5.579 -8.764 -9.159 -3.599 -3.614 -2.756 -0.002 -0.556 -4.456 2.117 -3.568 -3.663 0.106 -4.176 -1.699 2.659 -3.855 0.561 -2.623 ML 67 65 6 70 6 1 1 51 70 -6.923 -7.269 -0.677 -1.678 -7.119 -4.648 1.119 -0.998 -0.745 -0.454 MR 68 65 6 70 6 1 1 51 70 -7.252 -5.981 -1.194 -5.959 -1.093 -4.172 0.163 -0.712 0.481 -0.193 D 69 65 6 70 6 0 0 49 68 -9.209 -7.907 -2.460 -4.386 -4.404 -0.479 IL 70 70 5 70 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 53 u a - - MP 72 71 6 76 6 2 3 51 70 -9.805 -9.744 -0.161 -3.331 -8.800 -9.195 -0.793 -2.576 -2.587 0.534 0.521 -3.429 1.739 -2.817 -1.838 0.467 -3.194 -1.077 2.372 -2.735 -0.384 -1.769 ML 73 71 6 76 6 1 1 50 69 -6.716 -7.062 -0.816 -1.471 -6.912 -4.441 0.445 -0.105 -0.583 0.059 MR 74 71 6 76 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 47 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 51 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 52 u a - - MP 78 77 6 82 6 2 3 49 68 -9.686 -9.625 -0.027 -6.374 -8.682 -9.077 -0.753 -2.119 0.303 1.085 -2.055 -2.967 1.634 -2.432 -1.851 0.702 -2.747 -0.745 2.027 -2.258 -0.253 -1.359 ML 79 77 6 82 6 1 1 48 67 -7.875 -8.221 -0.310 -2.630 -8.071 -5.600 0.136 -0.540 -1.006 0.778 MR 80 77 6 82 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 51 c g - - MP 84 83 6 88 6 2 3 47 66 -9.818 -9.757 -0.013 -8.534 -8.814 -9.209 -0.396 -2.868 -2.914 0.430 -2.164 -3.757 2.368 -3.049 -2.938 0.440 -3.494 -1.210 2.019 -3.065 0.575 -1.420 ML 85 83 6 88 6 1 1 46 66 -6.490 -6.836 -1.016 -1.244 -6.686 -4.215 0.105 0.198 -0.578 0.148 MR 86 83 6 88 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 50 a u - - MP 90 89 6 94 4 2 2 45 64 -8.383 -8.590 -0.019 -7.004 -4.659 -4.552 -4.558 2.750 -3.538 -5.171 2.474 -4.225 -4.556 -0.568 -4.964 -2.477 0.188 -4.822 0.296 -3.427 ML 91 89 6 94 4 1 1 46 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 45 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 44 64 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 47 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - C - - - ML 96 95 6 98 3 1 1 42 61 -9.333 -0.008 -7.987 -4.503 1.942 -5.106 -3.576 D 97 95 6 98 3 0 0 42 61 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - A - - - ML 99 98 3 101 3 1 1 41 60 -9.333 -0.116 -3.729 1.111 -0.921 -1.410 -0.097 D 100 98 3 101 3 0 0 40 59 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - A - - - ML 102 101 3 104 3 1 1 40 59 -9.226 -0.009 -7.880 1.809 -3.110 -3.116 -1.911 D 103 101 3 104 3 0 0 39 58 -7.610 -0.424 -2.002 IL 104 104 3 104 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - C - - - ML 105 104 3 107 3 1 1 39 58 -9.333 -0.008 -7.987 -2.376 1.825 -4.001 -2.308 D 106 104 3 107 3 0 0 38 57 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - G - - - ML 108 107 3 110 3 1 1 38 57 -9.333 -0.008 -7.987 -3.934 -5.422 1.953 -4.669 D 109 107 3 110 3 0 0 37 56 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - G - - - ML 111 110 3 113 3 1 1 37 56 -9.333 -0.008 -7.987 -3.934 -5.422 1.953 -4.669 D 112 110 3 113 3 0 0 36 55 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - A - - - ML 114 113 3 116 3 1 1 36 55 -9.333 -0.008 -7.987 1.954 -4.881 -4.333 -4.596 D 115 113 3 116 3 0 0 35 54 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - U - - - ML 117 116 3 119 3 1 1 35 54 -9.333 -0.008 -7.987 -1.949 -0.619 -2.949 1.566 D 118 116 3 119 3 0 0 34 53 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - C - - - ML 120 119 3 122 3 1 1 34 53 -9.333 -0.008 -7.987 -3.667 1.887 -3.364 -2.988 D 121 119 3 122 3 0 0 33 52 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - G - - - ML 123 122 3 125 3 1 1 33 52 -9.333 -0.008 -7.987 -3.934 -5.422 1.953 -4.669 D 124 122 3 125 3 0 0 32 51 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - U - - - ML 126 125 3 128 5 1 1 32 50 -8.345 -0.016 -8.160 -8.372 -9.264 -3.911 -3.561 -4.706 1.930 D 127 125 3 128 5 0 0 30 49 -4.959 -0.803 -4.221 -2.596 -2.508 IL 128 128 3 128 5 1 1 32 51 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 32 49 C G - - MP 129 128 3 133 6 2 2 31 49 -9.830 -9.769 -0.013 -8.546 -8.826 -9.221 -5.057 -4.973 -4.873 -1.052 -3.650 -1.977 3.551 -4.412 -4.864 0.139 -5.222 -2.830 0.590 -5.168 -1.287 -3.676 ML 130 128 3 133 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 33 48 c g - - MP 135 134 6 139 6 2 2 29 47 -9.830 -9.769 -0.013 -8.546 -8.826 -9.221 -4.429 -3.635 -4.368 0.642 -3.923 -5.092 2.594 -4.323 -4.417 2.561 -4.836 -1.282 0.207 -4.467 -1.419 -3.176 ML 136 134 6 139 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 34 47 G C - - MP 141 140 6 145 6 2 2 27 45 -9.830 -9.769 -0.013 -8.546 -8.826 -9.221 -6.870 -4.253 -7.511 -0.831 -8.247 -5.622 -3.045 -7.690 -5.611 3.887 -5.860 -2.068 -3.364 -5.877 -5.261 -6.353 ML 142 140 6 145 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 144 140 6 145 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 145 145 5 145 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 35 46 G C - - MP 147 146 6 151 6 2 2 25 43 -9.830 -9.769 -0.013 -8.546 -8.826 -9.221 -7.150 -4.323 -8.042 -1.569 -8.449 -5.619 -3.211 -8.084 -5.675 3.914 -5.907 -2.175 -3.574 -5.957 -5.472 -6.891 ML 148 146 6 151 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 6 151 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 6 151 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 36 45 C G - - MP 153 152 6 157 6 2 2 23 41 -9.830 -9.769 -0.013 -8.546 -8.826 -9.221 -6.180 -6.333 -5.575 -2.488 -3.980 -5.772 3.781 -4.892 -5.669 -2.409 -5.802 -4.492 0.347 -6.074 -1.687 -4.465 ML 154 152 6 157 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 37 44 A U - - MP 159 158 6 163 4 2 2 21 39 -8.383 -8.590 -0.019 -7.004 -5.291 -6.979 -5.766 3.969 -9.370 -10.128 -5.333 -5.622 -7.963 -3.498 -8.527 -4.070 -5.516 -9.157 -7.129 -4.307 ML 160 158 6 163 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 38 - C - - - ML 165 164 6 167 3 1 1 18 36 -9.333 -0.008 -7.987 -4.503 1.942 -5.106 -3.576 D 166 164 6 167 3 0 0 18 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 39 - G - - - ML 168 167 3 170 3 1 1 17 35 -9.333 -0.008 -7.987 -3.934 -5.422 1.953 -4.669 D 169 167 3 170 3 0 0 17 35 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 40 - U - - - ML 171 170 3 173 3 1 1 15 34 -9.333 -0.008 -7.987 -3.911 -3.561 -4.706 1.930 D 172 170 3 173 3 0 0 16 34 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 41 - A - - - ML 174 173 3 176 3 1 1 14 32 -9.333 -0.008 -7.987 1.769 -2.979 -3.048 -1.538 D 175 173 3 176 3 0 0 15 33 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 42 - C - - - ML 177 176 3 179 3 1 1 12 31 -9.333 -0.008 -7.987 -4.503 1.942 -5.106 -3.576 D 178 176 3 179 3 0 0 13 32 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 43 - C - - - ML 180 179 3 182 2 1 1 1 1 * 0.000 -4.039 1.900 -4.693 -2.573 D 181 179 3 182 2 0 0 0 0 * 0.000 IL 182 182 3 182 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 183 182 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME msiK ACC RF01747 DESC msiK RNA LENG 60 MAXL 125 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:39:20 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 120 EFFN 15.618896 CKSUM 1954512246 STATS LOCAL MSV -7.9327 0.71926 STATS LOCAL VITERBI -8.3001 0.71926 STATS LOCAL FORWARD -4.4525 0.71926 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43974 1.25599 1.27866 1.61040 1.38629 1.38629 1.38629 1.38629 0.06034 5.20881 2.93579 1.46634 0.26236 0.00000 * 1 1.70788 1.56222 0.94054 1.52022 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.01155 5.16002 5.16002 1.46634 0.26236 0.26914 1.44408 2 1.58700 1.63185 0.87400 1.70038 2 g - - : 1.38629 1.38629 1.38629 1.38629 0.01104 5.20463 5.20463 1.46634 0.26236 1.32517 0.30892 3 1.53611 1.26889 1.28458 1.48337 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.01104 5.20463 5.20463 1.46634 0.26236 1.32517 0.30892 4 1.22996 1.50223 1.64929 1.22801 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.14615 5.20463 2.03650 1.46634 0.26236 1.32517 0.30892 5 1.07950 1.76163 1.11985 1.81930 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.04919 5.07111 3.17658 1.46634 0.26236 3.27812 0.03843 6 1.20373 1.97494 1.49116 1.09051 6 u - - : 1.38629 1.38629 1.38629 1.38629 0.11636 5.03501 2.26973 1.46634 0.26236 3.47120 0.03157 7 1.37642 0.98894 1.77103 1.58285 7 c - - : 1.38629 1.38629 1.38629 1.38629 0.05726 4.93316 3.02728 1.46634 0.26236 0.11809 2.19480 8 1.23354 1.53169 1.20447 1.64654 8 g - - : 1.38629 1.38629 1.38629 1.38629 0.70320 1.58565 1.20335 0.53245 0.88470 0.26250 1.46589 9 1.87027 1.27863 1.67657 0.96631 13 u - - : 1.38629 1.38629 1.38629 1.38629 0.11437 4.87450 2.29825 1.46634 0.26236 0.26453 1.45914 10 3.96686 0.24197 3.88820 1.74010 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01258 5.07487 5.07487 1.46634 0.26236 0.11269 2.23893 11 3.17319 0.79667 3.37038 0.74882 15 u - - < 1.38629 1.38629 1.38629 1.38629 0.03665 5.20463 3.49012 1.46634 0.26236 0.75826 0.63202 12 2.65481 1.16058 3.04072 0.56461 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.01128 5.18359 5.18359 1.46634 0.26236 0.30756 1.32892 13 2.23305 1.04728 2.53282 0.77117 17 u - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 14 1.26105 1.56460 2.08197 0.96027 18 u - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 15 2.07337 0.95182 2.54034 0.89316 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 16 0.67357 1.01969 3.97295 2.20189 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 17 5.19004 0.02014 5.52083 4.56984 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 18 0.53597 2.13923 2.61199 1.49717 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.09275 5.20881 2.48758 1.46634 0.26236 1.09861 0.40547 19 0.09412 4.13984 4.21268 2.82864 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.01193 5.12799 5.12799 1.46634 0.26236 0.12362 2.15171 20 3.19282 0.08282 4.73060 3.51966 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 21 4.77698 5.90916 0.01632 5.28874 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 22 4.77698 5.90916 0.01632 5.28874 26 G - - - 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 23 0.01420 5.60015 5.18448 5.33836 27 A - - - 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 24 3.17702 1.83345 4.05833 0.24699 28 U - - - 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 25 4.57183 0.04918 3.80291 4.17686 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 26 4.77698 5.90916 0.01632 5.28874 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 27 4.98181 4.66535 5.55795 0.02034 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 28 4.20740 0.18092 2.73480 2.45682 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 29 2.46706 0.81777 0.86266 2.96201 33 c - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 30 3.47212 5.22871 0.04278 5.20915 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 31 4.16233 5.25062 0.02637 5.25662 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 32 4.77940 0.10715 4.69932 2.47572 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 33 0.01134 6.00314 5.35029 5.50764 37 A - - < 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 34 5.19004 0.02014 5.52083 4.56984 38 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 35 4.77698 5.90916 0.01632 5.28874 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 36 4.98181 4.66535 5.55795 0.02034 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 37 0.12114 4.04954 4.16549 2.51165 41 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 38 5.19004 0.02014 5.52083 4.56984 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 39 4.84749 0.04499 5.18708 3.48821 43 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 40 5.83975 5.83597 5.96291 0.00844 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 41 2.59858 4.83371 0.09755 4.54608 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 42 5.29384 0.03306 5.16171 3.82727 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 43 5.25998 0.04999 5.12851 3.27968 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 44 3.20920 0.89267 0.79587 2.31400 48 g - - > 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 45 2.60907 2.50403 0.19198 3.94670 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 46 3.35103 4.20260 0.83155 0.66433 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02516 5.20881 3.94362 1.46634 0.26236 1.09861 0.40547 47 1.01265 2.72505 0.73713 2.37822 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.19095 5.19480 1.78213 1.46634 0.26236 0.44748 1.01953 48 0.98727 2.25961 1.05239 1.74921 52 a - - > 1.38629 1.38629 1.38629 1.38629 0.04916 5.03390 3.18300 1.46634 0.26236 0.06383 2.78335 49 0.45399 2.89604 1.42867 2.65871 53 A - - > 1.38629 1.38629 1.38629 1.38629 0.06797 5.17903 2.81217 1.46634 0.26236 0.27322 1.43097 50 0.62787 3.22300 0.97297 3.02661 54 A - - > 1.38629 1.38629 1.38629 1.38629 0.02622 5.15452 3.90665 1.46634 0.26236 0.17189 1.84561 51 1.44072 3.54832 0.35705 3.36013 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.11002 5.19514 2.31625 1.46634 0.26236 0.45377 1.00849 52 2.11124 4.18745 0.17015 3.90259 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.86817 0.55467 5.11248 0.59339 0.80397 0.10651 2.29226 53 0.51354 3.60135 1.22745 2.50961 61 A - - : 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 54 1.06842 2.70763 0.69683 2.39042 62 g - - : 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 55 0.77148 1.96440 1.53561 1.70314 63 a - - : 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 56 0.74054 1.95010 2.22544 1.29879 64 a - - : 1.38629 1.38629 1.38629 1.38629 0.01100 5.20881 5.20881 1.46634 0.26236 1.09861 0.40547 57 0.43484 2.03994 2.36316 2.05204 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.22422 5.20881 1.63275 1.46634 0.26236 1.09861 0.40547 58 0.73438 1.70762 2.26079 1.44975 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.11345 4.99818 2.29761 1.46634 0.26236 3.63052 0.02686 59 0.87444 1.80584 2.19079 1.18175 67 a - - : 1.38629 1.38629 1.38629 1.38629 0.27445 4.89975 1.45859 1.46634 0.26236 3.94392 0.01956 60 0.81350 1.69101 2.19617 1.34272 68 a - - : 1.38629 1.38629 1.38629 1.38629 0.00975 4.63505 * 1.46634 0.26236 0.00000 * //