INFERNAL1/a [1.1.4 | Dec 2020] NAME sucC ACC RF01759 DESC sucC RNA STATES 214 NODES 61 CLEN 70 W 88 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:40:14 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 18 EFFN 2.351074 CKSUM 1059023631 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 61.90 NC 41.20 EFP7GF -9.0018 0.71890 ECMLC 0.67362 -6.25009 2.41993 1600000 412648 0.002908 ECMGC 0.41495 -17.85228 -4.81802 1600000 89326 0.004478 ECMLI 0.65156 -3.98935 4.04295 1600000 224940 0.005335 ECMGI 0.45578 -12.51416 -1.20013 1600000 69433 0.005761 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 88 107 -7.111 -7.318 -0.047 -5.732 IL 1 1 2 1 4 1 27 92 112 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 91 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 27 88 107 -8.116 -0.019 -6.770 -0.296 -2.021 1.362 -1.440 D 4 2 3 5 3 0 21 87 106 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 26 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 26 87 106 -8.116 -0.019 -6.770 -1.772 -1.719 -2.519 1.691 D 7 5 3 8 3 0 21 85 105 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 25 89 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 1 25 86 105 -8.116 -0.019 -6.770 -0.852 1.153 -0.884 -0.555 D 10 8 3 11 3 0 20 84 104 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 24 88 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 24 85 104 -8.116 -0.019 -6.770 1.778 -2.680 -2.282 -2.254 D 13 11 3 14 3 0 19 83 103 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 23 87 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 23 84 103 -8.116 -0.019 -6.770 -1.189 1.260 -2.026 -0.118 D 16 14 3 17 3 0 18 82 102 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 23 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 22 83 101 -8.116 -0.019 -6.770 1.302 -0.751 -1.365 -0.856 D 19 17 3 20 3 0 18 81 100 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 22 85 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 21 82 100 -8.116 -0.019 -6.770 -0.707 -0.924 1.234 -0.974 D 22 20 3 23 3 0 17 80 99 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 21 84 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 20 81 99 -8.497 -0.017 -6.815 -1.903 -3.170 1.787 -2.558 D 25 23 3 26 3 0 16 79 98 -5.620 -0.734 -1.403 IL 26 26 3 26 3 1 20 81 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 77 - G - - MR 27 26 3 29 3 1 20 80 98 -8.497 -0.017 -6.815 -0.296 -2.021 1.362 -1.440 D 28 26 3 29 3 0 14 78 97 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 19 80 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 76 - A - - MR 30 29 3 32 3 1 19 79 97 -8.497 -0.017 -6.815 1.302 -0.751 -1.365 -0.856 D 31 29 3 32 3 0 14 77 96 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 18 79 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 75 - A - - MR 33 32 3 35 3 1 18 78 96 -8.497 -0.017 -6.815 1.302 -0.751 -1.365 -0.856 D 34 32 3 35 3 0 13 76 95 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 17 78 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 74 - a - - MR 36 35 3 38 3 1 17 77 95 -8.497 -0.017 -6.815 0.399 -0.117 -0.449 0.038 D 37 35 3 38 3 0 12 75 94 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 16 77 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 73 - A - - MR 39 38 3 41 3 1 16 75 94 -8.497 -0.017 -6.815 1.778 -2.680 -2.282 -2.254 D 40 38 3 41 3 0 11 74 92 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 16 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 72 - A - - MR 42 41 3 44 3 1 16 74 93 -2.575 -0.281 -6.815 1.094 -1.550 0.030 -0.994 D 43 41 3 44 3 0 11 72 91 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 15 74 93 -2.599 -0.322 -4.837 0.000 0.000 0.000 0.000 [ MATR 15 ] - 70 - U - - MR 45 44 3 47 3 1 15 73 92 -8.497 -0.017 -6.815 -1.772 -1.719 -2.519 1.691 D 46 44 3 47 3 0 10 71 90 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 74 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 69 - G - - MR 48 47 3 50 3 1 14 72 91 -8.497 -0.017 -6.815 -1.903 -3.170 1.787 -2.558 D 49 47 3 50 3 0 9 70 89 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 68 - G - - MR 51 50 3 53 3 1 13 71 90 -8.497 -0.017 -6.815 -1.903 -3.170 1.787 -2.558 D 52 50 3 53 3 0 8 69 88 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 12 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 67 - C - - MR 54 53 3 56 3 1 12 70 89 -8.497 -0.017 -6.815 -2.115 1.711 -2.946 -1.454 D 55 53 3 56 3 0 7 68 87 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 11 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 66 - A - - MR 57 56 3 59 3 1 11 69 88 -8.497 -0.017 -6.815 1.778 -2.680 -2.282 -2.254 D 58 56 3 59 3 0 7 67 86 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 11 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 65 - G - - MR 60 59 3 62 3 1 10 68 87 -2.854 -0.230 -6.815 0.082 -1.792 1.151 -1.209 D 61 59 3 62 3 0 6 66 85 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 10 68 87 -2.499 -0.348 -4.738 0.000 0.000 0.000 0.000 [ MATR 21 ] - 63 - A - - MR 63 62 3 65 3 1 9 67 85 -8.497 -0.017 -6.815 1.361 -1.711 -0.535 -1.200 D 64 62 3 65 3 0 5 65 84 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 9 68 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 62 - A - - MR 66 65 3 68 3 1 8 66 84 -8.497 -0.017 -6.815 1.778 -2.680 -2.282 -2.254 D 67 65 3 68 3 0 5 64 83 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 8 67 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 61 - G - - MR 69 68 3 71 3 1 7 65 83 -8.497 -0.017 -6.815 -0.296 -2.021 1.362 -1.440 D 70 68 3 71 3 0 4 63 82 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 7 66 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 60 - C - - MR 72 71 3 74 3 1 6 64 82 -8.497 -0.017 -6.815 -2.115 1.711 -2.946 -1.454 D 73 71 3 74 3 0 4 62 81 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 6 65 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 59 - A - - MR 75 74 3 77 3 1 6 63 81 -8.497 -0.340 -2.269 1.778 -2.680 -2.282 -2.254 D 76 74 3 77 3 0 3 61 80 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 7 64 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 58 - a - - MR 78 77 3 80 3 1 6 62 80 -8.178 -0.021 -6.496 0.810 -1.227 0.236 -0.641 D 79 77 3 80 3 0 2 61 79 -7.889 -0.385 -2.119 IR 80 80 3 80 3 1 5 63 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 57 - A - - MR 81 80 3 83 3 1 6 61 79 -8.497 -0.017 -6.815 1.778 -2.680 -2.282 -2.254 D 82 80 3 83 3 0 1 59 78 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 5 62 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 56 - U - - MR 84 83 3 86 3 1 5 60 78 -8.497 -0.017 -6.815 -0.324 -1.042 -1.499 1.240 D 85 83 3 86 3 0 0 58 77 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 4 61 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 55 - C - - MR 87 86 3 89 3 1 5 59 77 -8.497 -0.017 -6.815 -2.115 1.711 -2.946 -1.454 D 88 86 3 89 3 0 0 57 76 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 3 60 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 54 - C - - MR 90 89 3 92 3 1 4 58 76 -8.497 -0.017 -6.815 -0.353 1.153 -1.694 -0.546 D 91 89 3 92 3 0 0 56 75 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 3 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 53 - A - - MR 93 92 3 95 3 1 4 57 75 -8.497 -0.017 -6.815 1.778 -2.680 -2.282 -2.254 D 94 92 3 95 3 0 0 55 74 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 2 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 52 - U - - MR 96 95 3 98 3 1 3 56 74 -8.497 -0.017 -6.815 -1.772 -1.719 -2.519 1.691 D 97 95 3 98 3 0 0 54 73 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 2 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 51 - G - - MR 99 98 3 101 3 1 3 55 73 -8.497 -0.017 -6.815 0.272 -1.694 1.014 -1.109 D 100 98 3 101 3 0 0 53 72 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 2 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 50 - A - - MR 102 101 3 104 3 1 3 54 72 -8.497 -0.017 -6.815 1.778 -2.680 -2.282 -2.254 D 103 101 3 104 3 0 0 52 71 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 49 - C - - MR 105 104 3 107 3 1 2 53 71 -8.497 -0.017 -6.815 -2.115 1.711 -2.946 -1.454 D 106 104 3 107 3 0 0 51 70 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 48 - G - - MR 108 107 3 110 3 1 2 52 70 -8.497 -0.017 -6.815 -1.903 -3.170 1.787 -2.558 D 109 107 3 110 3 0 0 50 69 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 47 - C - - MR 111 110 3 113 3 1 2 51 69 -8.497 -0.017 -6.815 -2.115 1.711 -2.946 -1.454 D 112 110 3 113 3 0 0 49 68 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 46 - G - - MR 114 113 3 116 3 1 1 50 68 -8.497 -0.186 -3.079 -1.903 -3.170 1.787 -2.558 D 115 113 3 116 3 0 0 48 67 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 45 - U - - MR 117 116 3 119 3 1 1 49 67 -2.686 -0.261 -6.648 -0.110 -0.873 -1.266 1.078 D 118 116 3 119 3 0 0 47 66 -7.395 -0.578 -1.625 IR 119 119 3 119 3 1 1 49 68 -2.499 -0.348 -4.738 0.000 0.000 0.000 0.000 [ MATR 40 ] - 43 - A - - MR 120 119 3 122 3 1 1 47 66 -8.497 -0.017 -6.815 1.361 -1.711 -0.535 -1.200 D 121 119 3 122 3 0 0 46 65 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 42 - A - - MR 123 122 3 125 5 1 1 46 65 -7.227 -0.036 -7.042 -7.255 -8.146 1.778 -2.680 -2.282 -2.254 D 124 122 3 125 5 0 0 45 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 125 125 3 125 5 1 1 47 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 9 41 u g - - MP 126 125 3 130 6 2 2 45 64 -9.172 -9.111 -0.020 -7.888 -8.168 -8.563 -4.202 -4.238 -3.904 -0.550 -2.624 -4.305 2.177 -3.422 -3.955 -0.368 -4.243 -2.347 0.839 -4.259 2.857 -2.818 ML 127 125 3 130 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 3 130 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 3 130 6 0 0 42 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 45 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 10 40 G C - - MP 132 131 6 136 6 2 2 43 62 -9.172 -9.111 -0.020 -7.888 -8.168 -8.563 -4.214 -2.834 -4.233 1.206 -4.873 -4.626 -0.245 -4.588 -4.085 3.406 -4.461 -0.475 -0.553 -4.119 -2.250 -3.124 ML 133 131 6 136 6 1 1 42 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 42 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 40 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 43 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 11 39 G C - - MP 138 137 6 142 6 2 2 41 60 -9.172 -9.111 -0.020 -7.888 -8.168 -8.563 -5.043 -3.239 -5.176 -0.004 -5.655 -4.809 -0.945 -5.436 -4.519 3.703 -4.835 -0.951 -1.322 -4.663 -2.999 -4.048 ML 139 137 6 142 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 38 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 41 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 12 38 u g - - MP 144 143 6 148 6 2 2 39 58 -9.172 -9.111 -0.020 -7.888 -8.168 -8.563 -3.749 -3.760 -3.616 -0.105 -2.560 -4.161 2.144 -3.283 -3.645 0.087 -4.023 -1.851 1.714 -3.890 2.349 -2.544 ML 145 143 6 148 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 39 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 13 37 G C - - MP 150 149 6 154 6 2 2 37 56 -9.172 -9.111 -0.020 -7.888 -8.168 -8.563 -5.043 -3.239 -5.176 -0.004 -5.655 -4.809 -0.945 -5.436 -4.519 3.703 -4.835 -0.951 -1.322 -4.663 -2.999 -4.048 ML 151 149 6 154 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 37 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 14 36 c g - - MP 156 155 6 160 4 2 2 35 54 -7.111 -7.318 -0.047 -5.732 -3.580 -3.253 -3.542 0.472 -2.755 -4.233 2.789 -3.341 -3.543 1.738 -3.982 -1.080 1.100 -3.739 -0.393 -2.406 ML 157 155 6 160 4 1 1 36 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 37 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 15 - G - - - ML 162 161 6 164 3 1 1 33 51 -8.497 -0.017 -6.815 -1.903 -3.170 1.787 -2.558 D 163 161 6 164 3 0 0 32 50 -5.620 -0.734 -1.403 IL 164 164 3 164 3 1 1 34 52 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 35 - a - - MR 165 164 3 167 5 1 1 32 50 -7.227 -0.036 -7.042 -7.255 -8.146 0.695 -0.392 -1.054 0.187 D 166 164 3 167 5 0 0 30 49 -5.352 -0.707 -2.978 -4.409 -2.404 IR 167 167 3 167 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 16 34 G C - - MP 168 167 3 172 6 2 2 31 49 -9.172 -9.111 -0.020 -7.888 -8.168 -8.563 -5.043 -3.239 -5.176 -0.004 -5.655 -4.809 -0.945 -5.436 -4.519 3.703 -4.835 -0.951 -1.322 -4.663 -2.999 -4.048 ML 169 167 3 172 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 3 172 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 3 172 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 17 33 c g - - MP 174 173 6 178 6 2 2 29 47 -9.172 -9.111 -0.020 -7.888 -8.168 -8.563 -3.424 -3.255 -3.418 0.481 -2.598 -4.126 2.759 -3.211 -3.415 1.364 -3.876 -1.169 1.415 -3.603 0.111 -2.291 ML 175 173 6 178 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 178 178 5 178 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 18 32 G C - - MP 180 179 6 184 6 2 2 27 45 -9.172 -9.111 -0.020 -7.888 -8.168 -8.563 -3.515 -0.282 -3.517 1.459 -4.083 -4.176 0.265 -3.954 -3.624 3.047 -4.024 -0.196 0.005 -3.499 -1.635 -2.503 ML 181 179 6 184 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 183 179 6 184 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 184 184 5 184 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 185 185 6 185 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 19 31 C G - - MP 186 185 6 190 6 2 2 25 43 -9.172 -9.111 -0.137 -7.888 -8.168 -3.657 -4.005 -3.990 -3.802 -0.236 -2.613 -4.291 3.123 -3.372 -3.824 -0.039 -4.167 -2.008 0.994 -4.107 1.249 -2.683 ML 187 185 6 190 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 188 185 6 190 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 189 185 6 190 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 190 190 5 190 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 191 191 6 191 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 20 30 c g - - MP 192 191 6 196 4 2 2 23 41 -1.803 -7.018 -0.551 -5.433 -3.188 -2.968 -3.198 0.703 -2.498 -3.921 2.449 -3.068 -3.213 1.536 -3.678 -0.892 1.749 -3.365 -0.168 -2.105 ML 193 191 6 196 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 194 191 6 196 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 195 191 6 196 4 0 0 19 37 -5.750 -5.431 -0.620 -1.702 IL 196 196 5 196 4 1 1 22 40 -1.890 -0.920 -2.414 -6.152 0.000 0.000 0.000 0.000 IR 197 197 6 197 3 1 1 20 38 -1.665 -0.734 -3.585 0.000 0.000 0.000 0.000 [ MATL 55 ] 23 - c - - - ML 198 197 6 200 3 1 1 17 36 -8.067 -0.019 -6.721 -0.073 0.357 -0.111 -0.247 D 199 197 6 200 3 0 0 17 35 -6.601 -2.114 -0.398 IL 200 200 3 200 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 24 - u - - - ML 201 200 3 203 3 1 1 16 35 -8.067 -0.019 -6.721 0.236 -0.295 -1.075 0.616 D 202 200 3 203 3 0 0 15 34 -6.601 -1.037 -0.993 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 25 - u - - - ML 204 203 3 206 3 1 1 15 33 -8.116 -0.019 -6.770 0.046 0.038 -0.372 0.224 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 26 - a - - - ML 207 206 3 209 3 1 1 13 31 -8.116 -0.393 -2.089 0.633 -0.507 -0.189 -0.203 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 27 - A - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 1.606 -1.939 -1.615 -1.442 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 60 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME sucC ACC RF01759 DESC sucC RNA LENG 70 MAXL 152 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:40:14 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 18 EFFN 3.027832 CKSUM 1059023631 STATS LOCAL MSV -8.2269 0.71890 STATS LOCAL VITERBI -9.2878 0.71890 STATS LOCAL FORWARD -3.2455 0.71890 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.26014 1.41519 1.20742 1.74561 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 0.00000 * 1 1.65547 2.97687 0.38145 2.58798 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 2 2.90016 2.81570 3.42765 0.15939 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 3 2.16575 0.49122 2.06202 1.92237 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 4 0.11168 3.54458 3.23980 3.28027 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 5 2.40415 0.44113 3.00366 1.52905 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 6 0.42721 1.93452 2.47582 2.12789 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 7 2.03424 2.07472 0.44968 2.24623 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 8 3.00721 3.92344 0.10484 3.49562 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 9 3.13748 1.25060 2.96376 0.48022 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 10 1.84381 2.98588 0.30909 2.86165 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 11 2.78046 3.53979 0.13007 3.47587 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 12 2.79563 1.25963 2.58980 0.54450 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 13 2.78140 3.54103 0.12990 3.47757 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 14 2.36400 0.73273 1.41620 1.69977 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 15 3.00721 3.92344 0.10484 3.49562 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 16 2.78438 3.54501 0.12937 3.48299 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 17 2.31724 0.76824 1.64775 1.40590 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 18 1.41624 2.58555 0.52029 2.43412 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 19 2.89621 0.51759 2.68284 1.27138 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.26680 4.11485 1.52397 1.46634 0.26236 1.09861 0.40547 20 2.13088 0.98342 1.51724 1.24507 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.42226 1.12706 3.88981 0.24935 1.51098 0.13968 2.03742 21 1.47650 1.08903 1.43710 1.62250 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.07385 4.11485 2.90298 1.46634 0.26236 1.09861 0.40547 22 1.21727 1.59424 2.19257 0.94348 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03456 4.07556 4.07556 1.46634 0.26236 0.46705 0.98578 23 1.37099 1.33316 1.63960 1.24326 25 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 24 0.92799 1.74380 1.50968 1.56630 26 a - - _ 1.38629 1.38629 1.38629 1.38629 0.12748 4.11485 2.26954 1.46634 0.26236 1.09861 0.40547 25 0.21025 2.96134 2.71314 2.63754 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.47095 1.98791 1.43292 0.47038 0.98021 0.27456 1.42672 26 1.42950 1.64075 0.87481 1.89849 30 g - - > 1.38629 1.38629 1.38629 1.38629 0.04176 3.88981 3.88981 1.46634 0.26236 0.13968 2.03742 27 2.07882 2.84565 0.29209 2.65745 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 28 2.68184 0.50745 2.39540 1.43382 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 29 1.69862 1.76211 0.65197 2.08455 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 30 3.69405 0.15301 3.39779 2.48213 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 31 0.87335 1.66590 2.18657 1.26895 35 a - - - 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 32 1.94573 1.50923 0.66211 2.11797 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 33 3.66346 0.15503 3.38349 2.47646 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 34 1.50542 2.75213 0.45026 2.56632 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 35 3.66962 0.15462 3.38639 2.47761 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 36 3.09845 0.35380 2.80979 1.64689 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 37 2.21093 3.12988 0.23261 2.91475 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 38 0.11168 3.54458 3.23980 3.28027 42 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 39 0.39280 2.73896 1.77331 2.40318 43 A - - : 1.38629 1.38629 1.38629 1.38629 0.40321 1.70451 1.89736 0.17080 1.85143 1.09861 0.40547 40 1.50002 2.08468 2.37130 0.58130 45 U - - : 1.38629 1.38629 1.38629 1.38629 0.03842 3.97140 3.97140 1.46634 0.26236 0.19702 1.72136 41 3.00721 3.92344 0.10484 3.49562 46 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 42 3.21491 0.14020 3.78627 2.68861 47 C - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 43 3.00721 3.92344 0.10484 3.49562 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 44 3.21491 0.14020 3.78627 2.68861 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 45 0.11168 3.54458 3.23980 3.28027 50 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 46 1.20381 2.72125 0.62272 2.32609 51 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 47 2.90016 2.81570 3.42765 0.15939 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 48 0.11168 3.54458 3.23980 3.28027 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 49 1.70872 0.50230 2.75070 1.89792 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 50 3.21491 0.14020 3.78627 2.68861 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 51 1.66954 2.23275 2.56704 0.46574 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 52 0.11168 3.54458 3.23980 3.28027 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.32162 4.11485 1.35210 1.46634 0.26236 1.09861 0.40547 53 0.79022 2.33434 1.18910 1.93181 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.04406 3.83730 3.83730 1.46634 0.26236 0.11888 2.18848 54 0.11168 3.54458 3.23980 3.28027 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 55 3.21491 0.14020 3.78627 2.68861 60 C - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 56 1.65547 2.97687 0.38145 2.58798 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 57 0.11168 3.54458 3.23980 3.28027 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 58 0.39280 2.73896 1.77331 2.40318 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.22088 1.70451 4.11485 0.17080 1.85143 1.09861 0.40547 59 1.35409 2.79733 0.52670 2.40468 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 60 0.11168 3.54458 3.23980 3.28027 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 61 3.21491 0.14020 3.78627 2.68861 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 62 3.00721 3.92344 0.10484 3.49562 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 63 3.00721 3.92344 0.10484 3.49562 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 64 2.90016 2.81570 3.42765 0.15939 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.26680 1.52397 4.11485 0.14370 2.01100 1.09861 0.40547 65 0.58138 2.61510 1.34193 2.24078 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 66 0.11168 3.54458 3.23980 3.28027 73 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 67 1.10151 1.44881 1.70431 1.38277 74 a - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 68 0.42721 1.93452 2.47582 2.12789 75 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 69 0.42721 1.93452 2.47582 2.12789 76 A - - : 1.38629 1.38629 1.38629 1.38629 0.03320 4.11485 4.11485 1.46634 0.26236 1.09861 0.40547 70 1.65547 2.97687 0.38145 2.58798 77 G - - : 1.38629 1.38629 1.38629 1.38629 0.01674 4.09839 * 1.46634 0.26236 0.00000 * //