INFERNAL1/a [1.1.4 | Dec 2020] NAME whalefall-1 ACC RF01762 DESC Whalefall-1 RNA STATES 177 NODES 46 CLEN 56 W 70 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:40:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 14 EFFN 4.104980 CKSUM 1860200308 NULL 0.000 0.000 0.000 0.000 GA 37.00 TC 37.60 NC 35.90 EFP7GF -14.3465 0.71925 ECMLC 0.74190 -5.94285 2.08425 1600000 462941 0.002592 ECMGC 0.39729 -20.23740 -5.57725 1600000 135380 0.002955 ECMLI 0.73713 -4.57358 2.98741 1600000 316002 0.003797 ECMGI 0.44370 -15.23130 -2.73144 1600000 102497 0.003903 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 70 89 -7.642 -7.849 -0.033 -6.263 IL 1 1 2 1 4 1 16 75 94 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 74 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 15 70 89 -8.618 -0.013 -7.272 -0.293 -1.645 1.112 -0.510 D 4 2 3 5 3 0 10 69 88 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 15 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 14 69 88 -8.618 -0.013 -7.272 -1.688 -0.668 -2.449 1.525 D 7 5 3 8 3 0 10 68 87 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 14 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 13 68 87 -8.974 -0.012 -7.292 1.199 -2.105 0.189 -1.589 D 10 8 3 11 3 0 9 67 86 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 13 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 57 - C - - MR 12 11 3 14 3 1 13 67 86 -8.974 -0.012 -7.292 -1.715 1.381 -2.615 -0.110 D 13 11 3 14 3 0 7 66 84 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 12 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 56 - A - - MR 15 14 3 17 3 1 12 66 85 -8.974 -0.012 -7.292 1.713 -2.681 -1.456 -2.320 D 16 14 3 17 3 0 7 65 83 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 11 67 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 55 - G - - MR 18 17 3 20 3 1 11 65 84 -8.974 -0.012 -7.292 -2.868 -4.244 1.898 -3.604 D 19 17 3 20 3 0 6 64 82 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 10 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 54 - G - - MR 21 20 3 23 3 1 10 64 83 -8.974 -0.012 -7.292 -2.868 -4.244 1.898 -3.604 D 22 20 3 23 3 0 5 63 81 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 9 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 53 - A - - MR 24 23 3 26 3 1 9 63 82 -8.974 -0.012 -7.292 1.893 -3.670 -3.184 -3.342 D 25 23 3 26 3 0 5 61 80 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 8 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 52 - G - - MR 27 26 3 29 3 1 8 62 81 -8.974 -0.012 -7.292 -1.435 -3.285 1.756 -2.736 D 28 26 3 29 3 0 4 60 79 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 8 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 51 - u - - MR 30 29 3 32 3 1 7 61 80 -8.974 -0.012 -7.292 -0.426 -1.173 0.075 0.815 D 31 29 3 32 3 0 4 59 78 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 50 - G - - MR 33 32 3 35 3 1 6 60 79 -8.974 -0.012 -7.292 -2.868 -4.244 1.898 -3.604 D 34 32 3 35 3 0 3 58 77 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 6 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 49 - g - - MR 36 35 3 38 3 1 5 59 78 -8.974 -0.012 -7.292 0.637 -2.127 0.912 -1.578 D 37 35 3 38 3 0 3 58 76 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 5 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 48 - G - - MR 39 38 3 41 3 1 4 58 77 -8.974 -0.164 -3.241 -2.868 -4.244 1.898 -3.604 D 40 38 3 41 3 0 2 57 76 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 4 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 47 - A - - MR 42 41 3 44 2 1 3 57 76 -8.935 -0.003 1.582 -1.968 -1.944 -1.030 D 43 41 3 44 2 0 2 56 75 -5.651 -0.029 IR 44 44 3 44 2 1 3 58 77 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 102 0 2 56 75 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 31 49 -0.034 -7.225 -6.633 -7.273 [ MATP 17 ] 4 22 U A - - MP 47 46 1 51 6 2 2 31 49 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -4.697 -4.684 -4.399 -0.844 -3.072 -4.822 1.964 -3.869 -4.421 -0.681 -4.723 -2.651 3.260 -4.753 -0.735 -3.246 ML 48 46 1 51 6 1 1 30 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 1 51 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 5 21 C G - - MP 53 52 6 57 6 2 2 29 47 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -6.006 -6.034 -5.428 -2.203 -3.905 -5.647 3.831 -4.867 -5.569 -2.102 -5.629 -4.051 -0.589 -5.973 -1.691 -4.376 ML 54 52 6 57 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 6 20 u a - - MP 59 58 6 63 6 2 2 27 45 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -4.488 -4.444 -4.269 -0.571 -3.016 -4.765 2.679 -3.784 -4.270 -0.395 -4.616 -2.363 2.746 -4.581 -0.662 -3.094 ML 60 58 6 63 6 1 1 26 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 7 19 C G - - MP 65 64 6 69 6 2 2 25 43 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -6.006 -6.034 -5.428 -2.203 -3.905 -5.647 3.831 -4.867 -5.569 -2.102 -5.629 -4.051 -0.589 -5.973 -1.691 -4.376 ML 66 64 6 69 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 8 18 u a - - MP 71 70 6 75 6 2 2 23 41 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -4.488 -4.445 -4.269 -0.572 -3.016 -4.765 2.677 -3.784 -4.270 -0.396 -4.617 -2.363 2.748 -4.581 -0.662 -3.094 ML 72 70 6 75 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 22 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 19 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 9 17 C G - - MP 77 76 6 81 6 2 2 21 39 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -6.030 -6.019 -5.677 -2.328 -4.438 -6.021 3.849 -5.438 -5.868 -2.187 -1.939 -4.063 -1.125 -6.159 -2.386 -4.747 ML 78 76 6 81 6 1 1 20 38 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 20 38 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 18 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 10 16 C G - - MP 83 82 6 87 4 2 2 19 37 -7.642 -3.949 -0.125 -6.263 -6.006 -6.034 -5.428 -2.203 -3.905 -5.647 3.831 -4.867 -5.569 -2.102 -5.629 -4.051 -0.589 -5.973 -1.691 -4.376 ML 84 82 6 87 4 1 1 19 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 19 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 86 82 6 87 4 0 0 18 36 -4.568 -4.250 -2.265 -0.520 IL 87 87 5 87 4 1 1 20 38 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 19 37 -1.718 -0.623 -4.418 0.000 0.000 0.000 0.000 [ MATL 24 ] 11 - U - - - ML 89 88 6 91 3 1 1 16 34 -8.618 -0.013 -7.272 -1.055 -1.680 -2.328 1.588 D 90 88 6 91 3 0 0 16 34 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 12 - u - - - ML 92 91 3 94 3 1 1 14 33 -8.618 -0.013 -7.272 -0.337 0.409 -1.570 0.626 D 93 91 3 94 3 0 0 15 33 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 13 - G - - - ML 95 94 3 97 3 1 1 13 31 -8.618 -0.013 -7.272 -1.500 -2.416 1.562 -0.984 D 96 94 3 97 3 0 0 13 32 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 14 - G - - - ML 98 97 3 100 2 1 1 1 1 * 0.000 -0.639 -2.747 1.582 -2.214 D 99 97 3 100 2 0 0 0 0 * 0.000 IL 100 100 3 100 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 101 100 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 102 45 1 103 3 0 0 37 56 -8.618 -0.013 -7.272 IL 103 103 2 103 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - C - - - ML 104 103 2 106 3 1 1 37 56 -8.618 -0.013 -7.272 -1.939 1.516 -2.835 -0.438 D 105 103 2 106 3 0 0 36 55 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - A - - - ML 107 106 3 109 5 1 1 36 55 -7.679 -0.026 -7.494 -7.707 -8.598 1.351 -0.489 -1.753 -1.184 D 108 106 3 109 5 0 0 35 53 -4.959 -0.803 -4.221 -2.596 -2.508 IL 109 109 3 109 5 1 1 36 55 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 46 G C - - MP 110 109 3 114 6 2 2 35 54 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -5.987 -3.709 -6.328 -0.690 -6.945 -5.153 -2.003 -6.572 -5.054 3.834 -5.322 -1.481 -2.366 -5.256 -4.129 -5.188 ML 111 109 3 114 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 3 114 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 3 114 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 45 A U - - MP 116 115 6 120 6 2 2 33 52 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -5.407 -4.608 -4.920 3.811 -5.732 -6.812 -1.642 -1.588 -5.367 -0.973 -5.922 -2.099 -2.038 -6.022 -3.505 -4.083 ML 117 115 6 120 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 44 g c - - MP 122 121 6 126 6 2 2 31 50 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -3.553 -2.669 -3.529 1.935 -3.794 -4.274 0.635 -3.873 -3.709 2.654 -4.119 -0.386 1.170 -3.548 -1.337 -2.494 ML 123 121 6 126 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 28 43 u a - - MP 128 127 6 132 6 2 2 29 48 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -3.105 -3.056 -3.192 1.945 -2.663 -3.985 1.521 -3.184 -3.208 0.718 -3.722 -1.152 2.169 -3.358 0.595 -2.191 ML 129 127 6 132 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 29 42 u a - - MP 134 133 6 138 6 2 2 27 46 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -4.096 -4.051 -3.998 -0.226 -2.916 -4.606 2.517 -3.625 -3.983 -0.055 -4.396 -1.984 2.532 -4.253 0.753 -2.839 ML 135 133 6 138 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 30 41 c g - - MP 140 139 6 144 6 2 2 25 44 -9.413 -9.352 -0.052 -8.129 -5.227 -8.803 -3.003 -3.004 -3.110 1.358 -2.563 -3.925 2.565 -1.210 -3.109 0.688 -3.640 -1.122 1.627 -3.272 -0.333 -2.097 ML 141 139 6 144 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 31 40 a u - - MP 146 145 6 150 6 2 2 23 42 -9.378 -9.317 -0.017 -8.094 -8.374 -8.769 -1.017 -1.832 -0.225 1.671 -1.813 -2.677 1.344 -2.173 -1.895 0.932 -0.944 -0.499 1.452 -1.967 0.162 -1.092 ML 147 145 6 150 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 22 41 -7.409 -6.138 -1.014 -6.116 -1.250 -4.330 -0.110 -0.456 -0.721 0.797 D 149 145 6 150 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 32 39 c g - - MP 152 151 6 156 6 2 2 21 40 -9.413 -9.352 -0.017 -8.129 -8.408 -8.803 -3.645 -3.516 -3.659 1.586 -2.832 -4.404 2.726 -3.441 -3.636 0.508 -4.116 -1.420 1.566 -3.854 -0.480 -2.519 ML 153 151 6 156 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 33 38 g c - - MP 158 157 6 162 4 2 2 19 38 -7.642 -7.849 -0.033 -6.263 -3.661 -2.597 -3.591 1.608 -4.147 -4.278 0.400 -4.061 -3.846 2.905 -4.206 0.185 0.845 -3.547 -1.572 -2.560 ML 159 157 6 162 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 161 157 6 162 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 162 162 5 162 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 163 163 6 163 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - C - - - ML 164 163 6 166 3 1 1 16 34 -8.618 -0.013 -7.272 -0.752 1.463 -2.465 -1.095 D 165 163 6 166 3 0 0 16 34 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - u - - - ML 167 166 3 169 3 1 1 14 33 -8.618 -0.013 -7.272 -0.008 -0.468 -0.973 0.826 D 168 166 3 169 3 0 0 15 33 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - U - - - ML 170 169 3 172 3 1 1 13 31 -8.618 -0.173 -3.181 -2.724 -2.518 -3.499 1.842 D 171 169 3 172 3 0 0 13 32 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - G - - - ML 173 172 3 175 2 1 1 1 1 * 0.000 -2.584 -3.933 1.875 -3.308 D 174 172 3 175 2 0 0 0 0 * 0.000 IL 175 175 3 175 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 176 175 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME whalefall-1 ACC RF01762 DESC Whalefall-1 RNA LENG 56 MAXL 125 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:40:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 14 EFFN 7.967285 CKSUM 1860200308 STATS LOCAL MSV -7.5468 0.71925 STATS LOCAL VITERBI -8.2771 0.71925 STATS LOCAL FORWARD -3.6951 0.71925 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53355 1.47760 1.07291 1.54162 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 0.00000 * 1 1.73269 2.95408 0.48259 1.87157 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 2 3.21013 1.93412 3.73911 0.23405 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 3 0.46239 3.59255 1.18204 3.32302 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 4 3.94270 1.53390 3.77782 0.29835 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 5 4.89031 0.04391 4.83093 3.59512 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 6 3.67453 0.85275 3.47810 0.65869 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 7 4.85928 0.04451 4.81123 3.58859 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 8 3.66912 0.85487 3.47555 0.65736 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 9 4.73161 0.07491 3.35587 3.55858 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 10 4.84052 0.04488 4.79921 3.58456 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 11 2.34851 3.08985 3.61874 0.18373 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 12 1.74824 0.99082 2.86099 0.92272 12 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 13 3.02813 3.70946 0.20783 2.16491 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 14 1.94925 3.87445 0.21354 3.53578 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.08899 2.56747 4.77770 0.20654 1.67876 1.09861 0.40547 15 3.84602 4.94499 0.03858 4.67134 16 G - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 16 3.81193 4.80670 0.04165 4.55497 17 G - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 17 0.69794 3.63597 0.81313 3.42454 18 a - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 18 3.84886 4.95021 0.03842 4.67689 19 G - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 19 0.69958 3.63562 0.81134 3.42425 20 a - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 20 3.84597 4.94491 0.03858 4.67125 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 21 0.32573 3.90970 1.45959 3.66444 22 A - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 22 3.39608 0.23594 4.04174 1.83820 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 23 0.33784 1.69046 3.16760 2.81084 24 A - - - 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 24 3.65053 4.69577 0.04532 4.68863 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 25 0.06619 3.47375 3.73653 4.68716 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 26 1.22991 2.69000 0.75906 1.76203 27 g - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 27 1.12914 1.99209 2.53733 0.77392 28 u - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 28 3.32737 0.97291 3.10210 0.61401 29 U - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 29 1.66520 0.74487 2.31325 1.43922 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.07321 4.77770 2.77775 1.46634 0.26236 1.09861 0.40547 30 1.04490 1.75271 1.61690 1.28570 31 a - - < 1.38629 1.38629 1.38629 1.38629 0.01795 4.72244 4.72244 1.46634 0.26236 0.23955 1.54636 31 1.48364 0.72384 2.59748 1.54252 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 32 1.53173 2.76071 0.54227 1.97211 33 G - - < 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 33 2.08373 0.23421 3.84580 2.76510 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 34 1.41414 1.76966 2.15916 0.75278 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 35 4.10293 3.86040 4.65413 0.04825 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.15058 4.77770 2.02972 1.46634 0.26236 1.09861 0.40547 36 3.94348 4.95438 0.03879 4.45528 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01938 4.64650 4.64650 1.46634 0.26236 0.12055 2.17538 37 2.09170 0.65884 2.56094 1.26642 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 38 1.67739 2.75627 0.67903 1.41675 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 39 1.46069 1.97074 1.14679 1.16823 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 40 1.59137 2.49127 0.74735 1.42742 41 g - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 41 0.84705 3.27215 0.71797 3.08667 42 g - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 42 1.04329 2.71667 1.41730 1.08104 43 a - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 43 1.86660 0.82726 2.50502 1.11953 44 c - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 44 4.93113 4.14746 4.62419 0.03339 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 45 4.78186 0.05671 4.57901 3.31076 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.15058 4.77770 2.02972 1.46634 0.26236 1.09861 0.40547 46 0.19011 3.26013 3.30103 2.32381 47 A - - : 1.38629 1.38629 1.38629 1.38629 0.01938 4.64650 4.64650 1.46634 0.26236 0.12055 2.17538 47 4.11793 5.15057 0.03237 4.62743 48 G - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 48 0.88442 3.54012 0.65731 3.22408 49 G - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 49 4.11793 5.15057 0.03237 4.62743 50 G - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 50 1.89767 2.53332 1.24577 0.72780 51 u - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 51 2.63187 4.30479 0.11110 3.92703 52 G - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 52 0.03153 4.77538 4.39585 4.57791 53 A - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 53 4.11793 5.15057 0.03237 4.62743 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 54 4.11793 5.15057 0.03237 4.62743 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 55 0.13149 3.88173 2.54327 3.73022 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.01697 4.77770 4.77770 1.46634 0.26236 1.09861 0.40547 56 3.19844 0.32073 3.87157 1.54773 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.00852 4.76925 * 1.46634 0.26236 0.00000 * //