INFERNAL1/a [1.1.4 | Dec 2020] NAME veev_FSE ACC RF01841 DESC venezuelan equine encephalitis virus ribosomal frameshift element STATES 217 NODES 64 CLEN 71 W 87 ALPH RNA RF no CONS yes MAP yes DATE Wed Mar 5 13:56:39 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 1.782227 CKSUM 1064824264 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 78.00 NC 52.50 EFP7GF -7.3257 0.71892 ECMLC 0.54718 -10.04391 1.20852 1600000 566480 0.002118 ECMGC 0.43110 -17.50988 -4.64626 1600000 102435 0.003905 ECMLI 0.56242 -6.84220 3.02495 1600000 308525 0.003889 ECMGI 0.46040 -12.38270 -1.16606 1600000 69958 0.005718 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 87 106 -6.886 -7.093 -0.056 -5.507 IL 1 1 2 1 4 1 24 91 111 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 90 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 24 87 106 -7.907 -0.021 -6.561 -0.659 0.407 -1.430 0.740 D 4 2 3 5 3 0 18 85 105 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 23 89 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 23 86 105 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 7 5 3 8 3 0 18 84 104 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 22 88 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 22 85 104 -7.907 -0.021 -6.561 -1.459 -2.659 1.694 -2.045 D 10 8 3 11 3 0 17 83 103 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 87 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 22 83 103 -7.907 -0.021 -6.561 -0.662 0.473 -1.436 0.687 D 13 11 3 14 3 0 16 82 102 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 21 86 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 1 21 82 102 -7.907 -0.021 -6.561 -0.242 -1.323 1.028 -0.484 D 16 14 3 17 3 0 15 81 101 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 20 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 20 81 101 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 19 17 3 20 3 0 14 80 100 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 19 83 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - a - - - ML 21 20 3 23 3 1 19 80 100 -7.907 -0.021 -6.561 0.276 -0.435 0.091 -0.024 D 22 20 3 23 3 0 14 79 99 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 18 82 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 18 79 99 -7.907 -0.021 -6.561 -0.649 -1.205 1.273 -0.966 D 25 23 3 26 3 0 13 78 98 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 81 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 18 78 98 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 28 26 3 29 3 0 12 77 96 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 17 80 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 17 77 97 -7.907 -0.021 -6.561 -0.812 -1.716 1.355 -0.817 D 31 29 3 32 3 0 11 76 95 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 16 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 1 16 76 95 -7.907 -0.021 -6.561 -1.603 1.585 -2.422 -1.045 D 34 32 3 35 3 0 11 75 94 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 15 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 1 15 75 94 -7.907 -0.021 -6.561 -1.603 1.585 -2.422 -1.045 D 37 35 3 38 3 0 10 74 93 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 14 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 15 74 93 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 40 38 3 41 3 0 9 73 92 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 14 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 14 73 92 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 43 41 3 44 3 0 8 72 91 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 13 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 13 72 91 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 46 44 3 47 3 0 7 70 90 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 12 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - U - - - ML 48 47 3 50 3 1 12 71 90 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 49 47 3 50 3 0 7 69 89 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 11 73 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 51 50 3 53 3 1 11 70 89 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 52 50 3 53 3 0 6 68 88 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 11 72 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - U - - - ML 54 53 3 56 3 1 11 69 88 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 55 53 3 56 3 0 5 67 87 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 10 71 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 10 67 86 -7.907 -0.021 -6.561 1.693 -2.257 -1.900 -1.788 D 58 56 3 59 3 0 4 66 85 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 9 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - G - - - ML 60 59 3 62 3 1 9 66 85 -7.907 -0.021 -6.561 -1.459 -2.659 1.694 -2.045 D 61 59 3 62 3 0 3 65 84 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 8 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 63 62 3 65 3 1 8 65 84 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 64 62 3 65 3 0 3 64 83 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - c - - - ML 66 65 3 68 3 1 8 64 83 -7.907 -0.021 -6.561 -0.337 0.421 0.050 -0.262 D 67 65 3 68 3 0 2 63 82 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - c - - - ML 69 68 3 71 3 1 7 63 82 -7.907 -0.021 -6.561 -0.103 0.437 -0.260 -0.184 D 70 68 3 71 3 0 1 62 81 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 6 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - U - - - ML 72 71 3 74 3 1 6 62 81 -7.907 -0.021 -6.561 -1.381 -1.396 -2.109 1.587 D 73 71 3 74 3 0 1 61 80 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - g - - - ML 75 74 3 77 3 1 5 61 79 -8.301 -0.019 -6.619 0.535 -1.385 0.669 -0.791 D 76 74 3 77 3 0 0 60 78 -5.620 -0.734 -1.403 IL 77 77 3 77 3 1 4 62 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 71 - C - - MR 78 77 3 80 3 1 5 60 78 -8.301 -0.019 -6.619 -1.603 1.585 -2.422 -1.045 D 79 77 3 80 3 0 0 58 77 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 3 61 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 70 - G - - MR 81 80 3 83 3 1 4 59 77 -8.301 -0.019 -6.619 -1.459 -2.659 1.694 -2.045 D 82 80 3 83 3 0 0 57 76 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 60 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 69 - U - - MR 84 83 3 86 3 1 3 58 76 -8.301 -0.019 -6.619 -1.381 -1.396 -2.109 1.587 D 85 83 3 86 3 0 0 56 75 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 2 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 68 - A - - MR 87 86 3 89 3 1 3 57 75 -8.301 -0.019 -6.619 1.693 -2.257 -1.900 -1.788 D 88 86 3 89 3 0 0 55 74 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 67 - G - - MR 90 89 3 92 3 1 3 56 74 -8.301 -0.019 -6.619 -1.459 -2.659 1.694 -2.045 D 91 89 3 92 3 0 0 54 73 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 66 - C - - MR 93 92 3 95 3 1 2 55 73 -8.301 -0.019 -6.619 -1.603 1.585 -2.422 -1.045 D 94 92 3 95 3 0 0 53 72 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 65 - A - - MR 96 95 3 98 3 1 2 54 72 -8.301 -0.019 -6.619 1.693 -2.257 -1.900 -1.788 D 97 95 3 98 3 0 0 52 71 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 64 - c - - MR 99 98 3 101 3 1 1 53 71 -8.301 -0.019 -6.619 -0.339 0.895 -1.375 -0.053 D 100 98 3 101 3 0 0 51 70 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 1 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 34 ] - 63 - C - - MR 102 101 3 104 3 1 1 52 70 -8.301 -0.019 -6.619 -1.603 1.585 -2.422 -1.045 D 103 101 3 104 3 0 0 50 69 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 35 ] - 62 - A - - MR 105 104 3 107 3 1 1 51 69 -8.301 -0.019 -6.619 1.693 -2.257 -1.900 -1.788 D 106 104 3 107 3 0 0 49 68 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 1 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 36 ] - 61 - G - - MR 108 107 3 110 3 1 1 50 68 -8.301 -0.019 -6.619 -0.005 -1.638 1.135 -1.040 D 109 107 3 110 3 0 0 48 67 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 60 - C - - MR 111 110 3 113 3 1 1 49 67 -8.301 -0.019 -6.619 -1.603 1.585 -2.422 -1.045 D 112 110 3 113 3 0 0 47 66 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 50 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 59 - G - - MR 114 113 3 116 3 1 1 48 66 -8.301 -0.019 -6.619 -1.459 -2.659 1.694 -2.045 D 115 113 3 116 3 0 0 46 65 -6.390 -1.568 -0.620 IR 116 116 3 116 3 1 1 49 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 58 - C - - MR 117 116 3 119 3 1 1 47 65 -8.301 -0.019 -6.619 -1.603 1.585 -2.422 -1.045 D 118 116 3 119 3 0 0 45 64 -6.390 -1.568 -0.620 IR 119 119 3 119 3 1 1 48 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 57 - A - - MR 120 119 3 122 3 1 1 46 64 -8.301 -0.019 -6.619 1.693 -2.257 -1.900 -1.788 D 121 119 3 122 3 0 0 44 63 -6.390 -1.568 -0.620 IR 122 122 3 122 3 1 1 47 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 56 - C - - MR 123 122 3 125 3 1 1 45 63 -8.301 -0.019 -6.619 -1.603 1.585 -2.422 -1.045 D 124 122 3 125 3 0 0 43 62 -6.390 -1.568 -0.620 IR 125 125 3 125 3 1 1 46 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 42 ] - 55 - G - - MR 126 125 3 128 3 1 1 44 62 -8.301 -0.019 -6.619 -0.070 -1.677 1.177 -1.080 D 127 125 3 128 3 0 0 42 61 -6.390 -1.568 -0.620 IR 128 128 3 128 3 1 1 45 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 54 - A - - MR 129 128 3 131 3 1 1 43 61 -8.301 -0.019 -6.619 1.693 -2.257 -1.900 -1.788 D 130 128 3 131 3 0 0 41 60 -6.390 -1.568 -0.620 IR 131 131 3 131 3 1 1 44 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 53 - G - - MR 132 131 3 134 3 1 1 42 60 -8.301 -0.019 -6.619 -1.459 -2.659 1.694 -2.045 D 133 131 3 134 3 0 0 40 59 -6.390 -1.568 -0.620 IR 134 134 3 134 3 1 1 43 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 45 ] - 52 - C - - MR 135 134 3 137 3 1 1 41 59 -8.301 -0.019 -6.619 -1.603 1.585 -2.422 -1.045 D 136 134 3 137 3 0 0 39 58 -6.390 -1.568 -0.620 IR 137 137 3 137 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 51 - A - - MR 138 137 3 140 3 1 1 40 58 -8.301 -0.019 -6.619 1.155 -1.135 -1.158 -0.201 D 139 137 3 140 3 0 0 38 57 -6.390 -1.568 -0.620 IR 140 140 3 140 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 50 - U - - MR 141 140 3 143 3 1 1 39 57 -8.301 -0.019 -6.619 -1.381 -1.396 -2.109 1.587 D 142 140 3 143 3 0 0 37 56 -6.390 -1.568 -0.620 IR 143 143 3 143 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 48 ] - 49 - c - - MR 144 143 3 146 3 1 1 38 56 -8.301 -0.084 -4.220 -0.018 0.485 -1.139 0.213 D 145 143 3 146 3 0 0 36 55 -6.390 -1.568 -0.620 IR 146 146 3 146 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 49 ] - 48 - C - - MR 147 146 3 149 3 1 1 37 55 -8.237 -0.020 -6.555 -1.440 1.532 -2.252 -0.916 D 148 146 3 149 3 0 0 35 54 -6.822 -2.000 -0.432 IR 149 149 3 149 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 50 ] - 47 - G - - MR 150 149 3 152 5 1 1 36 54 -6.984 -0.042 -6.800 -7.012 -7.903 -1.311 -2.487 1.653 -1.872 D 151 149 3 152 5 0 0 34 53 -5.610 -0.565 -3.236 -4.667 -2.662 IR 152 152 3 152 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 26 46 G C - - MP 153 152 3 157 6 2 2 35 53 -9.084 -9.024 -0.021 -7.800 -8.080 -8.475 -4.634 -3.043 -4.724 0.271 -5.081 -4.651 -0.472 -4.958 -4.256 3.611 -4.601 -0.738 -0.860 -4.397 -2.503 -3.602 ML 154 152 3 157 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 3 157 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 3 157 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 27 45 C G - - MP 159 158 6 163 6 2 2 33 51 -9.084 -9.024 -0.021 -7.800 -8.080 -8.475 -4.437 -4.333 -4.146 -0.575 -2.889 -4.572 3.515 -3.688 -4.191 -0.319 -4.464 -2.279 0.637 -4.514 -0.593 -3.035 ML 160 158 6 163 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 6 163 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 163 163 5 163 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 28 44 C G - - MP 165 164 6 169 6 2 2 31 49 -9.084 -9.024 -0.021 -7.800 -8.080 -8.475 -3.176 -3.175 -0.352 0.234 -2.633 -3.931 3.113 -3.210 -3.268 0.474 -3.731 -1.376 0.899 -3.416 -0.480 -2.276 ML 166 164 6 169 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 6 169 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 29 43 G C - - MP 171 170 6 175 6 2 2 29 47 -9.084 -9.024 -0.021 -7.800 -8.080 -8.475 -4.634 -3.043 -4.724 0.271 -5.081 -4.651 -0.472 -4.958 -4.256 3.611 -4.601 -0.738 -0.860 -4.397 -2.503 -3.602 ML 172 170 6 175 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 30 42 G C - - MP 177 176 6 181 6 2 2 27 45 -9.084 -9.024 -0.021 -7.800 -8.080 -8.475 -3.981 -2.690 -4.019 0.775 -4.603 -4.482 -0.061 -4.359 -3.885 3.326 -4.280 0.631 -0.355 -3.945 -2.045 -2.921 ML 178 176 6 181 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 31 41 C G - - MP 183 182 6 187 6 2 2 25 43 -9.084 -9.024 -0.021 -7.800 -8.080 -8.475 -4.437 -4.333 -4.146 -0.575 -2.889 -4.572 3.515 -3.688 -4.191 -0.319 -4.464 -2.279 0.637 -4.514 -0.593 -3.035 ML 184 182 6 187 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 32 40 G C - - MP 189 188 6 193 6 2 2 23 41 -9.084 -9.024 -0.021 -7.800 -8.080 -8.475 -4.634 -3.043 -4.724 0.271 -5.081 -4.651 -0.472 -4.958 -4.256 3.611 -4.601 -0.738 -0.860 -4.397 -2.503 -3.602 ML 190 188 6 193 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 192 188 6 193 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 193 193 5 193 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 58 ] 33 39 C G - - MP 195 194 6 199 6 2 2 21 39 -9.084 -9.024 -0.049 -5.429 -8.080 -8.475 -4.437 -4.333 -4.146 -0.575 -2.889 -4.572 3.515 -3.688 -4.191 -0.319 -4.464 -2.279 0.637 -4.514 -0.593 -3.035 ML 196 194 6 199 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 198 194 6 199 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 59 ] 34 38 C G - - MP 201 200 6 205 4 2 2 19 37 -6.812 -7.019 -0.059 -5.433 -3.530 -3.564 -3.469 0.001 0.117 -4.075 3.143 -3.250 -3.505 0.162 -3.910 -1.716 1.013 -3.718 -0.319 -2.446 ML 202 200 6 205 4 1 1 19 38 -4.000 -4.182 -0.416 -2.912 0.041 0.307 -0.650 0.134 MR 203 200 6 205 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 205 205 5 205 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 35 - G - - - ML 207 206 6 209 3 1 1 15 33 -7.907 -0.021 -6.561 -1.459 -2.659 1.694 -2.045 D 208 206 6 209 3 0 0 15 33 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 36 - c - - - ML 210 209 3 212 3 1 1 13 32 -7.907 -0.021 -6.561 -0.754 0.859 -1.550 0.323 D 211 209 3 212 3 0 0 13 32 -6.174 -1.687 -0.566 IL 212 212 3 212 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 37 - A - - - ML 213 212 3 215 2 1 1 1 1 * 0.000 1.338 -0.992 -1.279 -0.842 D 214 212 3 215 2 0 0 0 0 * 0.000 IL 215 215 3 215 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 216 215 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME veev_FSE ACC RF01841 DESC venezuelan equine encephalitis virus ribosomal frameshift element LENG 71 MAXL 158 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Mar 5 13:56:39 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 10 EFFN 2.065430 CKSUM 1064824264 STATS LOCAL MSV -8.4370 0.71892 STATS LOCAL VITERBI -9.1667 0.71892 STATS LOCAL FORWARD -3.4851 0.71892 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.66033 1.26828 1.26118 1.40533 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 0.00000 * 1 1.90335 1.07677 2.44477 0.85922 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 2 2.48180 2.46780 2.99358 0.24650 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 3 2.55717 3.41448 0.17521 2.98978 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 4 1.90539 1.02813 2.44968 0.89835 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 5 1.59142 2.36221 0.63386 1.76252 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 6 2.48180 2.46780 2.99358 0.24650 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 7 1.19828 1.69008 1.30372 1.41773 7 a - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 8 1.92014 2.27328 0.45494 2.15459 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 9 2.48180 2.46780 2.99358 0.24650 9 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 10 2.04102 2.67673 0.40209 2.02198 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 11 2.67941 0.23837 3.25281 2.25548 11 C - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 12 2.67941 0.23837 3.25281 2.25548 12 C - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 13 2.48180 2.46780 2.99358 0.24650 13 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 14 2.48180 2.46780 2.99358 0.24650 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 15 2.48180 2.46780 2.99358 0.24650 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 16 2.48180 2.46780 2.99358 0.24650 16 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 17 2.48180 2.46780 2.99358 0.24650 17 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 18 2.48180 2.46780 2.99358 0.24650 18 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 19 0.18006 3.10156 2.83928 2.79144 19 A - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 20 2.55717 3.41448 0.17521 2.98978 20 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 21 2.48180 2.46780 2.99358 0.24650 21 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 22 1.66691 1.05855 1.32978 1.61105 22 c - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 23 1.48219 1.05115 1.55896 1.54661 23 c - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 24 2.48180 2.46780 2.99358 0.24650 24 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 25 1.00621 2.41374 0.89115 2.00446 25 g - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 26 2.48461 3.08364 0.19597 3.01968 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 27 3.04438 0.27846 2.80867 2.00145 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 28 1.97241 0.55593 2.18081 1.74645 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 29 2.49489 3.09504 0.19337 3.03571 29 G - - < 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 30 2.12155 2.77217 0.29195 2.64754 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 31 3.05355 0.27728 2.81284 2.00299 31 C - - < 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 32 2.49539 3.09559 0.19324 3.03649 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 33 3.05325 0.27732 2.81271 2.00294 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 34 2.54705 0.44097 2.38238 1.68229 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 35 2.55717 3.41448 0.17521 2.98978 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 36 1.98015 0.74895 2.54140 1.17011 36 c - - _ 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 37 0.42521 2.10712 2.34568 2.04794 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09804 3.88987 2.61812 1.46634 0.26236 1.09861 0.40547 38 1.57363 2.55256 0.47650 2.36581 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04412 3.83595 3.83595 1.46634 0.26236 0.44512 1.02372 39 2.27796 2.97962 0.24000 2.81231 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 40 3.24338 0.22764 2.92803 2.19775 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 41 2.27835 2.98012 0.23987 2.81293 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 42 2.87424 0.42059 2.59023 1.55175 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 43 3.24607 0.22736 2.92918 2.19827 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 44 1.99223 2.34639 0.41945 2.20289 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 45 2.27981 2.98201 0.23938 2.81529 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 46 3.25114 0.22683 2.93133 2.19925 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.09804 3.88987 2.61812 1.46634 0.26236 1.09861 0.40547 47 2.44728 3.28757 0.19968 2.86233 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.04412 3.83595 3.83595 1.46634 0.26236 1.71687 0.19800 48 2.55394 0.27129 3.12369 2.15556 48 C - - : 1.38629 1.38629 1.38629 1.38629 0.04412 3.83595 3.83595 1.46634 0.26236 0.44512 1.02372 49 1.41346 1.01776 2.22185 1.24867 49 c - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 50 2.48180 2.46780 2.99358 0.24650 50 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 51 0.55682 2.22291 2.24508 1.54759 51 A - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 52 2.67941 0.23837 3.25281 2.25548 52 C - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 53 2.55717 3.41448 0.17521 2.98978 53 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 54 0.18006 3.10156 2.83928 2.79144 54 A - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 55 1.46180 2.63652 0.52965 2.22781 55 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 56 2.67941 0.23837 3.25281 2.25548 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 57 0.18006 3.10156 2.83928 2.79144 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 58 2.67941 0.23837 3.25281 2.25548 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 59 2.55717 3.41448 0.17521 2.98978 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 60 2.67941 0.23837 3.25281 2.25548 60 C - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 61 1.41203 2.60642 0.55954 2.19746 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 62 0.18006 3.10156 2.83928 2.79144 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 63 2.67941 0.23837 3.25281 2.25548 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 64 1.66081 0.72176 2.40907 1.45150 64 c - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 65 0.18006 3.10156 2.83928 2.79144 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 66 2.67941 0.23837 3.25281 2.25548 66 C - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 67 2.55717 3.41448 0.17521 2.98978 67 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 68 0.18006 3.10156 2.83928 2.79144 68 A - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 69 2.48180 2.46780 2.99358 0.24650 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 70 2.55717 3.41448 0.17521 2.98978 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.04176 3.88987 3.88987 1.46634 0.26236 1.09861 0.40547 71 2.67941 0.23837 3.25281 2.25548 71 C - - : 1.38629 1.38629 1.38629 1.38629 0.02110 3.86921 * 1.46634 0.26236 0.00000 * //