INFERNAL1/a [1.1.4 | Dec 2020] NAME ST7-OT3_1 ACC RF02183 DESC ST7 overlapping transcript 3 conserved region 1 STATES 241 NODES 81 CLEN 79 W 160 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:51:33 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28 EFFN 3.995605 CKSUM 369985618 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 54.60 NC 40.40 EFP7GF -8.7258 0.71858 ECMLC 0.62428 -9.51717 0.40936 1600000 589470 0.002036 ECMGC 0.38443 -16.06348 -2.36114 1600000 77584 0.005156 ECMLI 0.47415 -9.66229 2.35765 1600000 358358 0.003349 ECMGI 0.41219 -8.19389 3.80124 1600000 56145 0.007124 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 160 244 -7.614 -7.821 -0.033 -6.235 IL 1 1 2 1 4 3 33 162 246 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 33 162 246 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 3 33 161 245 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 4 2 3 5 3 0 28 157 241 -11.551 -1.585 -0.585 IL 5 5 3 5 3 4 35 167 252 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 3 32 159 243 -5.953 -0.047 -5.953 1.722 -2.550 -1.630 -2.276 D 7 5 3 8 3 0 27 156 240 -11.551 -1.585 -0.585 IL 8 8 3 8 3 4 34 166 250 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 3 31 158 242 -5.953 -0.047 -5.953 1.059 -0.769 -0.685 -0.499 D 10 8 3 11 3 0 26 155 239 -11.551 -1.585 -0.585 IL 11 11 3 11 3 4 33 164 249 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 2 31 157 240 -5.953 -0.047 -5.953 0.043 -1.170 1.043 -1.106 D 13 11 3 14 3 0 26 154 237 -11.551 -1.585 -0.585 IL 14 14 3 14 3 3 32 163 248 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - - - ML 15 14 3 17 3 1 30 156 239 -5.953 -0.085 -4.600 -0.397 -0.590 0.994 -0.776 D 16 14 3 17 3 0 25 152 235 -11.551 -1.585 -0.585 IL 17 17 3 17 3 3 32 162 246 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 2 30 154 238 -5.917 -0.049 -5.917 1.213 -1.697 -0.027 -1.351 D 19 17 3 20 3 0 24 150 234 -12.153 -2.188 -0.358 IL 20 20 3 20 3 3 31 161 245 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 2 29 153 236 -5.917 -0.049 -5.917 -0.622 0.651 -1.217 0.433 D 22 20 3 23 3 0 24 149 232 -12.153 -2.188 -0.358 IL 23 23 3 23 3 3 31 160 244 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - u - - - ML 24 23 3 26 3 2 29 152 235 -5.917 -0.049 -5.917 -0.267 0.330 -0.747 0.396 D 25 23 3 26 3 0 23 148 231 -12.153 -2.188 -0.358 IL 26 26 3 26 3 2 30 158 242 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - U - - - ML 27 26 3 29 3 1 28 151 234 -5.917 -0.049 -5.917 -1.809 -0.774 -2.014 1.527 D 28 26 3 29 3 0 23 147 229 -12.153 -2.188 -0.358 IL 29 29 3 29 3 2 29 157 241 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - g - - - ML 30 29 3 32 3 1 27 149 232 -5.917 -0.049 -5.917 -0.034 -0.520 0.814 -0.817 D 31 29 3 32 3 0 22 145 228 -12.153 -2.188 -0.358 IL 32 32 3 32 3 2 29 156 240 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 26 148 231 -5.917 -0.049 -5.917 -2.366 -1.918 -2.552 1.753 D 34 32 3 35 3 0 22 144 227 -12.153 -2.188 -0.358 IL 35 35 3 35 3 2 28 155 238 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 25 147 230 -5.917 -0.049 -5.917 1.290 -1.319 -0.935 -0.664 D 37 35 3 38 3 0 21 143 226 -12.153 -2.188 -0.358 IL 38 38 3 38 3 2 27 153 237 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 25 146 228 -5.917 -0.049 -5.917 -1.945 -1.091 -2.154 1.607 D 40 38 3 41 3 0 21 143 225 -12.153 -2.188 -0.358 IL 41 41 3 41 3 2 26 152 236 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - G - - - ML 42 41 3 44 3 1 24 144 227 -5.917 -0.049 -5.917 -0.390 -2.210 1.458 -1.866 D 43 41 3 44 3 0 21 142 224 -12.153 -0.835 -1.188 IL 44 44 3 44 3 1 25 151 234 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - A - - - ML 45 44 3 47 3 1 23 143 225 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 46 44 3 47 3 0 19 140 222 -11.551 -1.585 -0.585 IL 47 47 3 47 3 1 24 150 233 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 16 ] 16 - A - - - ML 48 47 3 50 3 1 22 142 224 -5.953 -0.142 -3.682 1.558 -1.800 -1.892 -1.004 D 49 47 3 50 3 0 19 139 221 -11.551 -1.585 -0.585 IL 50 50 3 50 3 1 24 148 231 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - A - - - ML 51 50 3 53 3 1 22 140 223 -5.861 -0.051 -5.861 1.478 -1.909 -0.699 -1.587 D 52 50 3 53 3 0 18 138 220 -12.737 -0.500 -1.771 IL 53 53 3 53 3 1 23 147 230 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - C - - - ML 54 53 3 56 3 1 21 139 221 -5.953 -0.047 -5.953 -1.927 1.389 -2.147 -0.165 D 55 53 3 56 3 0 16 136 218 -11.551 -1.585 -0.585 IL 56 56 3 56 3 1 22 146 229 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - A - - - ML 57 56 3 59 3 1 20 138 220 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 58 56 3 59 3 0 15 135 216 -11.551 -1.585 -0.585 IL 59 59 3 59 3 1 22 145 227 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 60 59 3 62 3 1 19 137 218 -5.953 -0.047 -5.953 -0.842 1.029 -1.455 0.052 D 61 59 3 62 3 0 15 134 215 -11.551 -1.585 -0.585 IL 62 62 3 62 3 1 21 143 226 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 63 62 3 65 3 1 19 135 217 -5.953 -0.047 -5.953 1.696 -2.467 -1.479 -2.184 D 64 62 3 65 3 0 14 132 214 -11.551 -1.585 -0.585 IL 65 65 3 65 3 1 20 142 224 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - A - - - ML 66 65 3 68 3 1 18 134 215 -3.765 -0.136 -5.953 1.858 -3.174 -2.872 -2.962 D 67 65 3 68 3 0 13 131 213 -11.551 -1.585 -0.585 IL 68 68 3 68 3 1 18 134 215 -4.255 -0.078 -11.899 0.000 0.000 0.000 0.000 [ MATL 23 ] 24 - G - - - ML 69 68 3 71 3 1 17 133 214 -5.953 -0.047 -5.953 -0.528 -2.341 1.516 -2.001 D 70 68 3 71 3 0 13 130 211 -11.551 -1.585 -0.585 IL 71 71 3 71 3 1 19 140 222 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 72 71 3 74 3 1 16 132 213 -5.953 -0.047 -5.953 1.527 -2.077 -0.770 -1.759 D 73 71 3 74 3 0 12 129 210 -11.551 -1.585 -0.585 IL 74 74 3 74 3 1 18 138 221 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - U - - - ML 75 74 3 77 3 1 16 130 212 -5.953 -0.047 -5.953 -2.444 -1.982 -2.631 1.766 D 76 74 3 77 3 0 11 127 208 -11.551 -1.585 -0.585 IL 77 77 3 77 3 1 17 137 219 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - G - - - ML 78 77 3 80 3 1 15 129 210 -5.953 -0.047 -5.953 -0.896 -2.542 1.621 -2.214 D 79 77 3 80 3 0 11 126 207 -11.551 -1.585 -0.585 IL 80 80 3 80 3 1 16 136 218 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - G - - - ML 81 80 3 83 3 1 14 128 209 -5.953 -0.075 -4.868 -1.429 -2.825 1.728 -2.520 D 82 80 3 83 3 0 10 125 206 -11.551 -1.585 -0.585 IL 83 83 3 83 3 1 16 135 216 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 84 83 3 86 3 1 14 127 207 -5.927 -0.048 -5.927 -2.650 1.783 -2.886 -1.922 D 85 83 3 86 3 0 9 124 205 -12.009 -0.958 -1.043 IL 86 86 3 86 3 1 15 133 215 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - a - - - ML 87 86 3 89 3 1 13 125 206 -5.953 -0.047 -5.953 0.978 -0.357 -0.633 -0.725 D 88 86 3 89 3 0 8 122 202 -11.551 -1.585 -0.585 IL 89 89 3 89 3 1 15 132 214 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - A - - - ML 90 89 3 92 3 1 12 124 204 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 91 89 3 92 3 0 8 121 201 -11.551 -1.585 -0.585 IL 92 92 3 92 3 1 14 131 212 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - A - - - ML 93 92 3 95 3 1 12 123 203 -5.953 -0.047 -5.953 1.702 -2.486 -1.513 -2.205 D 94 92 3 95 3 0 7 119 200 -11.551 -1.585 -0.585 IL 95 95 3 95 3 1 13 129 211 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - G - - - ML 96 95 3 98 3 1 11 121 201 -5.953 -0.047 -5.953 -0.937 -1.712 1.524 -1.751 D 97 95 3 98 3 0 6 118 198 -11.551 -1.585 -0.585 IL 98 98 3 98 3 1 13 128 209 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - A - - - ML 99 98 3 101 3 1 11 120 200 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 100 98 3 101 3 0 6 117 197 -11.551 -1.585 -0.585 IL 101 101 3 101 3 1 12 127 208 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - a - - - ML 102 101 3 104 3 1 10 119 199 -5.953 -0.047 -5.953 0.640 -0.575 -0.014 -0.359 D 103 101 3 104 3 0 5 115 195 -11.551 -1.585 -0.585 IL 104 104 3 104 3 1 11 126 206 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - G - - - ML 105 104 3 107 3 1 9 117 197 -5.953 -0.047 -5.953 -0.512 -0.956 1.179 -0.946 D 106 104 3 107 3 0 5 114 194 -11.551 -1.585 -0.585 IL 107 107 3 107 3 1 11 124 205 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 108 107 3 110 3 1 9 116 196 -5.953 -0.047 -5.953 -1.561 -1.068 -1.347 1.481 D 109 107 3 110 3 0 4 113 192 -11.551 -1.585 -0.585 IL 110 110 3 110 3 1 10 123 204 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - - - ML 111 110 3 113 3 1 8 115 194 -5.953 -0.047 -5.953 0.010 -2.033 1.285 -1.681 D 112 110 3 113 3 0 3 111 191 -11.551 -1.585 -0.585 IL 113 113 3 113 3 1 10 122 202 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - G - - - ML 114 113 3 116 3 1 8 113 193 -5.953 -0.047 -5.953 -1.051 -2.175 1.562 -1.546 D 115 113 3 116 3 0 3 110 189 -11.551 -1.585 -0.585 IL 116 116 3 116 3 1 9 120 201 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - A - - - ML 117 116 3 119 3 1 7 112 191 -5.953 -0.047 -5.953 1.717 -2.533 -1.599 -2.257 D 118 116 3 119 3 0 2 109 188 -11.551 -1.585 -0.585 IL 119 119 3 119 3 1 8 119 199 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - A - - - ML 120 119 3 122 3 1 7 111 190 -5.953 -0.047 -5.953 1.376 -1.029 -1.496 -0.838 D 121 119 3 122 3 0 2 107 186 -11.551 -1.585 -0.585 IL 122 122 3 122 3 1 8 118 198 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - G - - - ML 123 122 3 125 3 1 6 109 188 -5.953 -0.047 -5.953 -0.876 -2.092 1.517 -1.483 D 124 122 3 125 3 0 1 106 185 -11.551 -1.585 -0.585 IL 125 125 3 125 3 1 7 116 196 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - G - - - ML 126 125 3 128 3 1 5 108 187 -5.953 -0.047 -5.953 0.126 -1.966 1.217 -1.612 D 127 125 3 128 3 0 1 105 183 -11.551 -1.585 -0.585 IL 128 128 3 128 3 1 7 115 195 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - A - - - ML 129 128 3 131 3 1 5 107 185 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 130 128 3 131 3 0 0 103 182 -11.551 -1.585 -0.585 IL 131 131 3 131 3 1 6 114 193 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - A - - - ML 132 131 3 134 3 1 4 105 184 -5.953 -0.047 -5.953 1.628 -2.283 -1.147 -1.983 D 133 131 3 134 3 0 0 102 180 -11.551 -1.585 -0.585 IL 134 134 3 134 3 1 6 112 192 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - - - ML 135 134 3 137 3 1 4 104 182 -5.953 -0.047 -5.953 1.858 -3.174 -2.872 -2.962 D 136 134 3 137 3 0 0 101 179 -11.551 -1.585 -0.585 IL 137 137 3 137 3 1 5 111 190 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - A - - - ML 138 137 3 140 3 1 4 102 181 -5.953 -0.047 -5.953 1.488 -1.664 -1.759 -0.775 D 139 137 3 140 3 0 0 99 177 -11.551 -1.585 -0.585 IL 140 140 3 140 3 1 5 110 189 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 141 140 3 143 3 1 3 101 179 -5.953 -0.047 -5.953 -0.834 -0.570 -1.033 1.187 D 142 140 3 143 3 0 0 98 175 -11.551 -1.585 -0.585 IL 143 143 3 143 3 1 4 108 187 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 48 ] 49 - U - - - ML 144 143 3 146 3 1 3 100 177 -5.953 -0.047 -5.953 -1.057 -1.346 -1.256 1.437 D 145 143 3 146 3 0 0 96 174 -11.551 -1.585 -0.585 IL 146 146 3 146 3 1 3 107 186 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 49 ] 50 - A - - - ML 147 146 3 149 3 1 2 98 176 -5.953 -0.047 -5.953 1.097 -0.831 -0.449 -0.821 D 148 146 3 149 3 0 0 95 172 -11.551 -1.585 -0.585 IL 149 149 3 149 3 1 2 106 184 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 50 ] 51 - A - - - ML 150 149 3 152 3 1 1 97 174 -5.953 -0.310 -2.497 1.560 -1.179 -1.907 -1.544 D 151 149 3 152 3 0 0 93 170 -11.551 -1.585 -0.585 IL 152 152 3 152 3 1 3 105 183 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 51 ] 52 - A - - - ML 153 152 3 155 3 1 1 96 173 -5.700 -0.117 -4.090 1.117 -1.426 -0.022 -1.080 D 154 152 3 155 3 0 0 90 167 -13.663 -3.698 -0.116 IL 155 155 3 155 3 1 3 104 182 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 52 ] 53 - c - - - ML 156 155 3 158 3 1 2 95 172 -5.642 -0.059 -5.642 -0.734 0.870 -1.169 0.172 D 157 155 3 158 3 0 0 90 166 -13.875 -3.909 -0.099 IL 158 158 3 158 3 1 3 102 180 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - U - - - ML 159 158 3 161 3 1 2 93 170 -5.642 -0.059 -5.642 -1.355 -1.206 -1.095 1.437 D 160 158 3 161 3 0 0 89 165 -13.875 -2.299 -0.328 IL 161 161 3 161 3 1 3 101 178 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - a - - - ML 162 161 3 164 3 1 2 92 168 -5.700 -0.057 -5.700 0.955 -0.671 -0.601 -0.369 D 163 161 3 164 3 0 0 88 164 -13.663 -3.698 -0.116 IL 164 164 3 164 3 1 2 99 177 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - A - - - ML 165 164 3 167 3 1 1 90 166 -5.700 -0.057 -5.700 1.769 -2.510 -2.246 -2.275 D 166 164 3 167 3 0 0 88 164 -13.663 -0.242 -2.698 IL 167 167 3 167 3 1 1 98 175 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - u - - - ML 168 167 3 170 3 1 1 89 165 -5.953 -0.047 -5.953 -0.739 0.087 -1.273 0.945 D 169 167 3 170 3 0 0 85 161 -11.551 -1.585 -0.585 IL 170 170 3 170 3 1 1 96 173 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - G - - - ML 171 170 3 173 3 1 1 87 163 -5.953 -0.047 -5.953 -0.032 -2.057 1.307 -1.705 D 172 170 3 173 3 0 0 84 159 -11.551 -1.585 -0.585 IL 173 173 3 173 3 1 1 95 172 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 58 ] 59 - C - - - ML 174 173 3 176 3 1 1 86 161 -5.953 -0.047 -5.953 -2.286 1.635 -2.537 -0.950 D 175 173 3 176 3 0 0 82 157 -11.551 -1.585 -0.585 IL 176 176 3 176 3 1 1 94 170 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 59 ] 60 - C - - - ML 177 176 3 179 3 1 1 84 160 -5.953 -0.047 -5.953 -1.566 1.293 -1.406 -0.260 D 178 176 3 179 3 0 0 81 156 -11.551 -1.585 -0.585 IL 179 179 3 179 3 1 1 92 169 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 60 ] 61 - A - - - ML 180 179 3 182 3 1 1 83 158 -5.953 -0.047 -5.953 1.398 -1.894 -0.402 -1.560 D 181 179 3 182 3 0 0 79 154 -11.551 -1.585 -0.585 IL 182 182 3 182 3 1 1 91 167 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 61 ] 62 - G - - - ML 183 182 3 185 3 1 1 81 156 -5.953 -0.047 -5.953 -0.955 -1.987 1.488 -1.229 D 184 182 3 185 3 0 0 78 152 -11.551 -1.585 -0.585 IL 185 185 3 185 3 1 1 89 165 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 62 ] 63 - C - - - ML 186 185 3 188 3 1 1 80 154 -5.953 -0.047 -5.953 -1.465 1.301 -0.761 -0.776 D 187 185 3 188 3 0 0 76 150 -11.551 -1.585 -0.585 IL 188 188 3 188 3 1 1 88 164 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 63 ] 64 - A - - - ML 189 188 3 191 3 1 1 78 153 -5.953 -0.047 -5.953 1.556 -2.130 -0.868 -1.816 D 190 188 3 191 3 0 0 75 149 -11.551 -1.585 -0.585 IL 191 191 3 191 3 1 1 86 162 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 64 ] 65 - G - - - ML 192 191 3 194 3 1 1 77 151 -5.953 -0.047 -5.953 -1.088 -2.644 1.664 -2.324 D 193 191 3 194 3 0 0 73 147 -11.551 -1.585 -0.585 IL 194 194 3 194 3 1 1 85 160 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 65 ] 66 - U - - - ML 195 194 3 197 3 1 1 75 149 -5.953 -0.047 -5.953 -1.699 -0.327 -1.899 1.393 D 196 194 3 197 3 0 0 72 145 -11.551 -1.585 -0.585 IL 197 197 3 197 3 1 1 84 158 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 66 ] 67 - U - - - ML 198 197 3 200 3 1 1 73 147 -5.953 -0.089 -4.522 -1.988 -1.074 -2.200 1.611 D 199 197 3 200 3 0 0 70 143 -11.551 -1.585 -0.585 IL 200 200 3 200 3 1 1 82 157 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 67 ] 68 - C - - - ML 201 200 3 203 3 1 1 72 145 -5.913 -0.049 -5.913 -0.937 1.519 -2.102 -1.397 D 202 200 3 203 3 0 0 69 142 -12.197 -0.801 -1.232 IL 203 203 3 203 3 1 1 81 155 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 68 ] 69 - A - - - ML 204 203 3 206 3 1 1 70 143 -5.953 -0.047 -5.953 1.273 -0.992 -0.789 -0.995 D 205 203 3 206 3 0 0 66 139 -11.551 -1.585 -0.585 IL 206 206 3 206 3 1 1 79 153 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 69 ] 70 - G - - - ML 207 206 3 209 3 1 1 68 141 -5.953 -0.047 -5.953 -0.508 -1.711 1.312 -0.973 D 208 206 3 209 3 0 0 65 137 -11.551 -1.585 -0.585 IL 209 209 3 209 3 1 1 77 151 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 70 ] 71 - C - - - ML 210 209 3 212 3 1 1 67 139 -5.953 -0.047 -5.953 -2.371 1.675 -2.626 -1.150 D 211 209 3 212 3 0 0 63 135 -11.551 -1.585 -0.585 IL 212 212 3 212 3 1 1 76 149 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 71 ] 72 - U - - - ML 213 212 3 215 3 1 1 65 137 -5.953 -0.047 -5.953 -2.444 -1.982 -2.631 1.766 D 214 212 3 215 3 0 0 61 133 -11.551 -1.585 -0.585 IL 215 215 3 215 3 1 1 74 147 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 72 ] 73 - U - - - ML 216 215 3 218 3 1 1 63 135 -5.953 -0.109 -4.144 -1.845 -0.733 -2.052 1.526 D 217 215 3 218 3 0 0 59 131 -11.551 -1.585 -0.585 IL 218 218 3 218 3 1 1 73 145 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 73 ] 74 - U - - - ML 219 218 3 221 3 1 1 61 133 -5.894 -0.049 -5.894 -2.318 -1.878 -2.502 1.745 D 220 218 3 221 3 0 0 58 129 -12.427 -0.652 -1.461 IL 221 221 3 221 3 1 1 71 143 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 74 ] 75 - G - - - ML 222 221 3 224 3 1 1 59 130 -5.953 -0.047 -5.953 -2.316 -3.300 1.838 -3.026 D 223 221 3 224 3 0 0 54 125 -11.551 -1.585 -0.585 IL 224 224 3 224 3 1 1 69 141 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 75 ] 76 - C - - - ML 225 224 3 227 3 1 1 57 127 -5.953 -0.047 -5.953 -1.544 1.500 -2.122 -0.738 D 226 224 3 227 3 0 0 52 122 -11.551 -1.585 -0.585 IL 227 227 3 227 3 1 1 68 139 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 76 ] 77 - U - - - ML 228 227 3 230 3 1 1 54 125 -5.953 -0.047 -5.953 -1.567 0.250 -1.760 1.123 D 229 227 3 230 3 0 0 48 118 -11.551 -1.585 -0.585 IL 230 230 3 230 3 1 1 66 137 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 77 ] 78 - U - - - ML 231 230 3 233 3 1 1 51 121 -5.953 -0.047 -5.953 -0.794 -0.612 -1.415 1.259 D 232 230 3 233 3 0 0 44 113 -11.551 -1.585 -0.585 IL 233 233 3 233 3 1 1 64 134 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 78 ] 79 - A - - - ML 234 233 3 236 3 1 1 48 117 -5.953 -0.047 -5.953 1.092 -0.830 -0.438 -0.818 D 235 233 3 236 3 0 0 32 101 -11.551 -1.585 -0.585 IL 236 236 3 236 3 1 1 62 131 -0.384 -2.121 -8.028 0.000 0.000 0.000 0.000 [ MATL 79 ] 80 - A - - - ML 237 236 3 239 2 1 1 1 1 * 0.000 1.673 -2.399 -1.356 -2.110 D 238 236 3 239 2 0 0 0 0 * 0.000 IL 239 239 3 239 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 80 ] - - - - - - E 240 239 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME ST7-OT3_1 ACC RF02183 DESC ST7 overlapping transcript 3 conserved region 1 LENG 79 MAXL 160 ALPH RNA RF no MM no CONS yes CS yes MAP no DATE Thu Feb 20 19:51:33 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 28 EFFN 3.995605 STATS LOCAL MSV -8.4729 0.71858 STATS LOCAL VITERBI -9.2744 0.71858 STATS LOCAL FORWARD -3.3030 0.71858 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.00952 1.73177 1.47419 1.47110 1.38629 1.38629 1.38629 1.38629 0.01895 5.27767 4.29249 0.39730 1.11515 0.00000 * 1 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 2 0.19246 3.15409 2.51625 2.96363 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 3 0.65221 1.91917 1.86111 1.73231 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 4 1.35677 2.19708 0.66321 2.15257 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 5 1.66132 1.79548 0.69710 1.92388 - g - - : 1.38629 1.38629 1.38629 1.38629 0.05909 4.12643 3.18852 1.46634 0.26236 1.09861 0.40547 6 0.54567 2.56235 1.40481 2.32269 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03367 4.10101 4.10101 1.46634 0.26236 1.51615 0.24789 7 1.81742 0.93523 2.23016 1.08604 - c - - : 1.38629 1.38629 1.38629 1.38629 0.03367 4.10101 4.10101 1.46634 0.26236 1.51615 0.24789 8 1.57110 1.15752 1.90402 1.11185 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03367 4.10101 4.10101 1.46634 0.26236 1.51615 0.24789 9 2.64005 1.92250 2.78207 0.32782 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03367 4.10101 4.10101 1.46634 0.26236 1.51615 0.24789 10 1.40982 1.74684 0.82182 1.95293 - g - - : 1.38629 1.38629 1.38629 1.38629 0.03367 4.10101 4.10101 1.46634 0.26236 1.51615 0.24789 11 3.02656 2.71549 3.15501 0.17114 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03367 4.10101 4.10101 1.46634 0.26236 1.51615 0.24789 12 0.49217 2.30088 2.03427 1.84671 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03367 4.10101 4.10101 1.46634 0.26236 1.51615 0.24789 13 2.73473 2.14266 2.87905 0.27239 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03367 4.10101 4.10101 1.46634 0.26236 1.51615 0.24789 14 1.65688 2.91790 0.37595 2.67969 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03367 4.10101 4.10101 1.46634 0.26236 0.57824 0.82300 15 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 16 0.30627 2.63419 2.69760 2.08208 - A - - : 1.38629 1.38629 1.38629 1.38629 0.09876 4.12643 2.55239 1.46634 0.26236 1.09861 0.40547 17 0.36210 2.70930 1.87073 2.48661 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03501 4.06268 4.06268 1.46634 0.26236 0.34672 1.22760 18 2.72186 0.42331 2.87470 1.50085 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 19 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 20 1.97020 0.67285 2.39455 1.35052 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 21 0.21058 3.09663 2.41143 2.90045 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 22 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.09397 2.60975 4.12643 0.05382 2.94892 1.09861 0.40547 23 1.75207 3.00875 0.33579 2.77323 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 24 0.32816 2.82623 1.91980 2.60531 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 25 3.08023 2.75991 3.21012 0.16205 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 26 2.00754 3.14812 0.26282 2.92125 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 27 2.37690 3.34430 0.18839 3.13300 - G - - : 1.38629 1.38629 1.38629 1.38629 0.05169 4.12643 3.37436 1.46634 0.26236 1.09861 0.40547 28 3.22338 0.15038 3.38696 2.71834 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03343 4.10816 4.10816 1.46634 0.26236 0.66412 0.72304 29 0.70848 1.63402 1.82500 1.88883 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 30 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 31 0.20629 3.10973 2.43521 2.91484 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 32 2.03582 2.57323 0.33009 2.59994 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 33 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 34 0.94241 1.78474 1.39614 1.63516 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 35 1.74132 2.04900 0.56903 2.04195 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 36 2.46810 2.12657 2.31978 0.35995 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 37 1.37941 2.79514 0.49565 2.55116 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 38 2.11461 2.89380 0.30337 2.45773 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 39 0.19609 3.14213 2.49432 2.95047 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 40 0.43227 2.09935 2.42358 1.96735 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 41 1.99335 2.83648 0.33454 2.41395 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 42 1.29867 2.74906 0.54240 2.50386 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 43 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 44 0.25816 2.96891 2.18115 2.76057 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 45 0.09865 3.58648 3.37685 3.43922 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 46 0.35504 2.53962 2.60559 1.92347 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 47 1.96420 1.78147 2.10241 0.56356 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 48 2.11885 2.31944 2.25688 0.39034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 49 0.62586 1.96213 1.69771 1.95518 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 50 0.30491 2.20332 2.70813 2.45679 - A - - : 1.38629 1.38629 1.38629 1.38629 0.21473 4.12643 1.73102 1.46634 0.26236 1.09861 0.40547 51 0.61177 2.37439 1.40130 2.13484 - A - - : 1.38629 1.38629 1.38629 1.38629 0.08117 3.95092 2.83487 1.46634 0.26236 2.56284 0.08022 52 1.89483 0.78345 2.19691 1.26698 - c - - : 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 2.70975 0.06887 53 2.32547 2.22195 2.14523 0.39034 - U - - : 1.38629 1.38629 1.38629 1.38629 0.04088 3.91063 3.91063 1.46634 0.26236 1.59369 0.22712 54 0.72456 1.85157 1.80283 1.64176 - a - - : 1.38629 1.38629 1.38629 1.38629 0.03923 3.95092 3.95092 1.46634 0.26236 2.56284 0.08022 55 0.16044 3.12639 2.94322 2.96315 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03923 3.95092 3.95092 1.46634 0.26236 0.16744 1.86970 56 1.89858 1.32618 2.26900 0.73123 - u - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 57 1.40843 2.81189 0.48010 2.56840 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 58 2.97114 0.25325 3.14457 2.04485 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 59 2.47194 0.49034 2.36106 1.56619 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 60 0.41752 2.69897 1.66462 2.46762 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 61 2.04796 2.76392 0.35486 2.23789 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 62 2.40160 0.48461 1.91401 1.92413 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 63 0.30799 2.86279 1.98805 2.64500 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 64 2.14048 3.21894 0.23258 2.99742 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 65 2.56429 1.61276 2.70266 0.42059 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 66 2.76440 2.13092 2.91090 0.26941 - U - - : 1.38629 1.38629 1.38629 1.38629 0.06151 4.12643 3.13472 1.46634 0.26236 1.09861 0.40547 67 2.03611 0.33363 2.84359 2.35461 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03375 4.09867 4.09867 1.46634 0.26236 0.55497 0.85353 68 0.50382 2.07372 1.93337 2.07620 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 69 1.73860 2.57255 0.47712 2.06101 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 70 3.02951 0.22502 3.20662 2.18329 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 71 3.08023 2.75991 3.21012 0.16205 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 72 2.66501 1.89461 2.80837 0.32889 - U - - : 1.38629 1.38629 1.38629 1.38629 0.07549 4.12643 2.87228 1.46634 0.26236 1.09861 0.40547 73 2.99316 2.68787 3.12067 0.17707 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03422 4.08516 4.08516 1.46634 0.26236 0.45148 1.01248 74 2.99184 3.67377 0.11235 3.48377 - G - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 75 2.45685 0.34680 2.85710 1.89768 - C - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 76 2.47248 1.21268 2.60600 0.60808 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 77 1.93654 1.81066 2.36722 0.51331 - U - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 78 0.62945 1.96131 1.68963 1.95295 - A - - : 1.38629 1.38629 1.38629 1.38629 0.03281 4.12643 4.12643 1.46634 0.26236 1.09861 0.40547 79 0.22687 3.04946 2.32615 2.84870 - A - - : 1.38629 1.38629 1.38629 1.38629 * 0.00000 * 0.45905 0.99935 0.00000 * //