INFERNAL1/a [1.1.4 | Dec 2020] NAME Betaproteobacteria_toxic_sRNA ACC RF02278 DESC Betaproteobacteria toxic small RNA STATES 201 NODES 54 CLEN 64 W 86 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:56:24 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 51 EFFN 4.143127 CKSUM 2729869815 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 50.10 NC 49.60 EFP7GF -12.7722 0.71924 ECMLC 0.60960 -8.69004 1.36189 1600000 550041 0.002182 ECMGC 0.38426 -19.29151 -4.93379 1600000 99558 0.004018 ECMLI 0.58138 -7.78701 2.46564 1600000 465449 0.002578 ECMGI 0.42256 -14.03054 -1.46711 1600000 80841 0.004948 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 86 111 -7.652 -7.859 -0.032 -6.273 IL 1 1 2 1 4 1 21 89 114 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 88 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 2 20 86 111 -8.628 -0.013 -7.282 -1.733 -1.531 -2.249 1.652 D 4 2 3 5 3 0 15 84 109 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 20 87 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 19 85 110 -8.628 -0.013 -7.282 -2.884 -4.261 1.900 -3.621 D 7 5 3 8 3 0 15 83 108 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 86 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 18 84 109 -8.628 -0.013 -7.282 -2.741 -2.532 -3.516 1.844 D 10 8 3 11 3 0 14 82 107 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 18 85 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 17 83 108 -8.628 -0.013 -7.282 -3.304 1.870 -4.084 -2.443 D 13 11 3 14 3 0 13 81 106 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 17 84 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 16 82 107 -8.628 -0.013 -7.282 -2.741 -2.532 -3.516 1.844 D 16 14 3 17 3 0 13 80 105 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 16 83 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 1 15 81 106 -8.628 -0.013 -7.282 -3.304 1.870 -4.084 -2.443 D 19 17 3 20 3 0 12 79 105 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 15 82 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 21 20 3 23 3 1 14 80 105 -8.983 -0.059 -4.715 -3.304 1.870 -4.084 -2.443 D 22 20 3 23 3 0 12 79 104 -5.620 -0.734 -1.403 IL 23 23 3 23 3 1 14 80 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 76 - u - - MR 24 23 3 26 3 1 14 79 104 -8.936 -0.012 -7.254 -0.664 -0.056 -1.109 0.958 D 25 23 3 26 3 0 10 77 103 -6.884 -0.917 -1.114 IR 26 26 3 26 3 1 13 79 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 75 - U - - MR 27 26 3 29 3 1 13 78 103 -8.983 -0.012 -7.301 -1.418 -1.330 -2.374 1.602 D 28 26 3 29 3 0 9 76 101 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 12 78 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 74 - U - - MR 30 29 3 32 3 1 12 77 102 -8.983 -0.012 -7.301 -1.507 -1.197 -2.198 1.582 D 31 29 3 32 3 0 9 75 100 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 12 77 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 73 - U - - MR 33 32 3 35 3 1 11 76 101 -8.983 -0.012 -7.301 -1.607 -1.892 -2.650 1.697 D 34 32 3 35 3 0 8 74 99 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 76 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 72 - U - - MR 36 35 3 38 3 1 10 75 100 -8.983 -0.012 -7.301 -1.768 -1.782 -2.091 1.669 D 37 35 3 38 3 0 8 73 99 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 10 75 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 71 - U - - MR 39 38 3 41 3 1 9 74 99 -8.983 -0.012 -7.301 -1.404 -1.325 -2.366 1.599 D 40 38 3 41 3 0 7 72 98 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 9 74 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 70 - U - - MR 42 41 3 44 2 1 8 73 98 -9.123 -0.003 -1.555 -1.384 -1.877 1.587 D 43 41 3 44 2 0 7 72 97 -4.432 -0.068 IR 44 44 3 44 2 1 8 74 99 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 117 0 7 72 97 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 40 62 -0.034 -7.231 -6.639 -7.279 [ MATP 17 ] 8 33 U A - - MP 47 46 1 51 6 2 2 40 62 -9.418 -9.357 -0.017 -8.133 -8.413 -8.808 -5.985 -5.831 -5.610 -2.051 -4.247 -6.005 0.081 -5.041 -5.604 -1.980 -5.893 -3.693 3.790 -6.035 -1.880 -4.138 ML 48 46 1 51 6 1 1 39 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 1 51 6 1 1 39 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 36 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 40 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 40 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 9 32 C G - - MP 53 52 6 57 6 2 2 38 60 -9.418 -9.357 -0.017 -8.133 -8.413 -8.808 -6.026 -6.056 -5.444 -2.225 -3.918 -5.660 3.834 -4.884 -5.587 -2.126 -5.643 -4.075 -0.606 -5.992 -1.707 -4.394 ML 54 52 6 57 6 1 1 37 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 37 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 34 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 38 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 38 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 10 31 C G - - MP 59 58 6 63 6 2 2 36 58 -9.418 -9.357 -0.017 -8.133 -8.413 -8.808 -5.378 -5.419 -4.905 -1.555 -3.418 -5.192 3.695 -4.300 -4.977 -1.420 -5.160 -3.434 0.454 -5.353 -1.121 -3.780 ML 60 58 6 63 6 1 1 35 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 35 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 32 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 36 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 36 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 11 30 A U - - MP 65 64 6 69 6 2 2 34 56 -9.418 -9.357 -0.038 -5.814 -8.413 -8.808 -5.069 -3.852 -4.896 3.783 -6.003 -7.249 -1.622 -4.853 -4.855 -0.319 -5.459 -1.178 -2.019 -6.154 -3.552 -3.737 ML 66 64 6 69 6 1 1 33 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 33 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 30 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 34 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 34 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 12 29 c g - - MP 71 70 6 75 6 2 2 32 54 -9.397 -9.336 -0.141 -8.113 -3.572 -8.788 -3.865 -3.765 -3.832 0.449 -2.842 -4.528 2.763 -3.507 -3.795 0.296 -4.253 -1.635 2.191 -4.051 -0.146 -2.645 ML 72 70 6 75 6 1 1 31 53 -6.554 -6.900 -1.614 -0.753 -6.750 -4.279 0.826 -0.709 -0.434 -0.193 MR 73 70 6 75 6 1 1 31 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 28 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 32 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 32 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 13 28 c g - - MP 77 76 6 81 6 2 2 31 53 -9.275 -9.214 -0.118 -7.991 -3.855 -8.666 -3.292 -2.840 -3.375 0.711 -2.922 -4.162 2.502 -3.336 -3.333 1.374 -3.808 1.233 1.001 -3.536 -0.588 -2.267 ML 78 76 6 81 6 1 1 29 51 -6.554 -6.900 -0.953 -1.309 -6.750 -4.279 0.033 -0.397 -0.564 0.624 MR 79 76 6 81 6 1 1 29 51 -8.089 -3.154 -1.162 -6.796 -1.333 -5.010 0.130 -0.632 -0.190 0.469 D 80 76 6 81 6 0 0 27 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 30 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 30 52 -2.565 -0.437 -6.076 -4.244 -5.350 0.000 0.000 0.000 0.000 [ MATP 23 ] 14 26 u a - - MP 83 82 6 87 6 2 2 29 51 -9.298 -9.237 -0.155 -8.013 -3.436 -8.688 -2.486 -2.608 -2.624 0.656 -0.892 -3.436 1.976 0.224 -2.657 0.664 -3.197 -0.986 2.122 -2.785 0.047 -1.740 ML 84 82 6 87 6 1 1 28 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 27 49 -8.087 -6.816 -2.725 -6.795 -0.488 -3.132 -0.152 -0.754 0.326 0.326 D 86 82 6 87 6 0 0 25 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 28 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 28 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 15 25 C G - - MP 89 88 6 93 4 2 2 27 49 -7.089 -7.296 -0.048 -5.710 -3.357 -3.366 -3.383 0.223 -0.976 -4.094 3.096 -3.248 -3.395 0.378 -3.862 -1.470 1.214 -3.587 -0.377 -1.621 ML 90 88 6 93 4 1 1 27 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 4 1 1 26 48 -6.603 -5.632 -0.322 -2.560 0.592 -0.816 -1.004 0.512 D 92 88 6 93 4 0 0 25 47 -4.883 -4.564 -2.580 -0.402 IL 93 93 5 93 4 1 1 28 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 94 94 6 94 3 1 1 27 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 16 - U - - - ML 95 94 6 97 3 1 1 24 46 -8.593 -0.013 -7.247 -2.171 -1.725 -2.921 1.741 D 96 94 6 97 3 0 0 23 45 -6.603 -1.035 -0.995 IL 97 97 3 97 3 1 1 26 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 17 - C - - - ML 98 97 3 100 3 1 1 23 45 -8.628 -0.013 -7.282 -3.304 1.870 -4.084 -2.443 D 99 97 3 100 3 0 0 22 44 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 25 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 18 - C - - - ML 101 100 3 103 3 1 1 22 44 -8.628 -0.080 -4.281 -1.993 1.700 -3.090 -1.389 D 102 100 3 103 3 0 0 21 43 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 24 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 19 - U - - - ML 104 103 3 106 3 1 1 21 43 -8.561 -0.044 -5.191 -1.468 -1.181 -1.927 1.553 D 105 103 3 106 3 0 0 19 41 -6.905 -2.418 -0.314 IL 106 106 3 106 3 1 1 23 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 20 - C - - - ML 107 106 3 109 3 1 1 20 42 -2.787 -0.407 -3.311 -2.481 1.734 -3.324 -1.339 D 108 106 3 109 3 0 0 16 38 -7.136 -1.324 -0.753 IL 109 109 3 109 3 1 1 22 44 -1.206 -0.894 -5.126 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - u - - - ML 110 109 3 112 3 1 1 13 31 -8.442 -0.015 -7.096 0.009 0.379 -1.350 0.380 D 111 109 3 112 3 0 0 12 31 -7.642 -0.413 -2.034 IL 112 112 3 112 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - U - - - ML 113 112 3 115 2 1 1 1 1 * 0.000 0.173 -1.274 -1.599 1.091 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 117 45 1 118 3 0 0 48 73 -8.628 -0.013 -7.282 IL 118 118 2 118 3 1 1 50 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 119 118 2 121 3 1 1 48 73 -8.628 -0.013 -7.282 -2.741 -2.532 -3.516 1.844 D 120 118 2 121 3 0 0 46 71 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 49 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 122 121 3 124 3 1 1 47 72 -8.628 -0.013 -7.282 -1.542 -1.866 -2.612 1.687 D 123 121 3 124 3 0 0 45 70 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 48 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - c - - - ML 125 124 3 127 5 1 1 46 71 -2.072 -0.416 -7.503 -7.715 -8.607 0.089 0.483 -1.090 0.097 D 126 124 3 127 5 0 0 44 69 -4.959 -0.803 -4.221 -2.596 -2.508 IL 127 127 3 127 5 1 1 46 71 -1.936 -0.522 -5.371 -7.203 -6.476 0.000 0.000 0.000 0.000 [ MATP 37 ] 40 69 a u - - MP 128 127 3 132 6 2 2 44 70 -9.418 -9.357 -0.030 -6.328 -8.413 -8.808 -3.584 -2.708 -3.592 2.670 -3.921 -4.452 0.599 -3.908 -3.709 2.219 -4.157 -0.173 0.426 -3.691 -1.500 -2.538 ML 129 127 3 132 6 1 1 43 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 3 132 6 1 1 43 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 3 132 6 0 0 40 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 44 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 44 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 41 68 G C - - MP 134 133 6 138 6 2 2 42 68 -9.405 -9.344 -0.017 -8.121 -8.400 -8.795 -3.831 -2.675 -3.744 1.358 -4.308 -4.370 0.992 -4.208 -3.981 3.074 -4.321 -0.163 0.028 -3.669 -1.668 -2.691 ML 135 133 6 138 6 1 1 41 66 -6.447 -6.793 -1.508 -0.830 -6.643 -4.173 0.248 -0.630 0.330 -0.137 MR 136 133 6 138 6 1 1 41 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 38 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 42 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 42 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 42 67 C G - - MP 140 139 6 144 6 2 2 40 66 -5.855 -9.344 -0.040 -8.121 -8.400 -8.795 -4.995 -4.946 -4.671 -1.055 -3.317 -5.077 3.608 -4.143 -4.705 -0.329 -4.971 -2.857 0.279 -5.044 -0.513 -3.513 ML 141 139 6 144 6 1 1 39 64 -6.447 -6.793 -1.508 -0.830 -6.643 -4.173 0.142 0.130 -0.534 0.152 MR 142 139 6 144 6 1 1 38 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 36 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 40 65 -2.831 -1.851 -1.012 -4.749 -5.525 -5.186 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 39 65 -2.566 -0.436 -6.078 -4.245 -5.351 0.000 0.000 0.000 0.000 [ MATP 40 ] 44 65 C G - - MP 146 145 6 150 6 2 2 38 64 -9.405 -9.344 -0.017 -8.121 -8.400 -8.795 -4.890 -4.726 -4.610 -0.851 -3.325 -5.078 3.575 -4.110 -4.620 0.164 -4.917 -2.545 0.309 -4.985 -0.990 -3.434 ML 147 145 6 150 6 1 1 37 62 -6.447 -6.793 -1.061 -1.202 -6.643 -4.173 0.132 -0.372 -0.456 0.488 MR 148 145 6 150 6 1 1 36 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 34 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 38 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 38 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 45 64 C G - - MP 152 151 6 156 6 2 2 36 62 -9.418 -9.357 -0.017 -8.133 -8.413 -8.808 -4.646 -4.464 -4.411 0.465 -3.176 -4.929 3.475 -3.923 -4.399 -0.429 -4.738 -2.266 0.500 -4.768 -0.820 -3.221 ML 153 151 6 156 6 1 1 35 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 35 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 32 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 36 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 36 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 63 g c - - MP 158 157 6 162 6 2 2 34 60 -9.418 -9.357 -0.017 -8.133 -8.413 -8.808 -3.636 -2.537 -3.548 1.617 -4.219 -4.226 0.538 -2.867 -3.851 2.998 -4.192 0.199 0.069 -3.487 -1.610 -2.530 ML 159 157 6 162 6 1 1 33 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 33 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 30 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 34 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 34 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 47 62 g c - - MP 164 163 6 168 6 2 2 32 58 -9.418 -9.357 -0.017 -8.133 -8.413 -8.808 -3.066 -2.710 -3.136 1.573 -2.899 -3.922 1.876 -3.287 -3.220 2.063 -3.711 -0.333 1.263 -3.217 -0.365 -2.134 ML 165 163 6 168 6 1 1 31 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 31 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 29 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 32 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 32 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 48 61 c g - - MP 170 169 6 174 4 2 2 30 56 -7.652 -7.859 -0.032 -6.273 -2.019 -1.423 -2.195 1.443 -1.349 -3.038 1.681 -1.997 -2.258 1.552 -2.818 -0.480 1.599 -2.330 -0.211 -1.400 ML 171 169 6 174 4 1 1 30 55 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 29 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 28 54 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 31 56 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 30 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - c - - - ML 176 175 6 178 3 1 1 28 54 -8.628 -0.013 -7.282 -0.481 0.845 -1.193 0.070 D 177 175 6 178 3 0 0 26 52 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 29 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - c - - - ML 179 178 3 181 3 1 1 27 53 -8.628 -0.126 -3.628 -0.407 0.960 -1.491 -0.082 D 180 178 3 181 3 0 0 25 51 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 29 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - a - - - ML 182 181 3 184 3 1 1 26 52 -8.516 -0.014 -7.170 0.362 -0.364 -0.335 0.196 D 183 181 3 184 3 0 0 24 49 -7.238 -1.997 -0.429 IL 184 184 3 184 3 1 1 28 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - c - - - ML 185 184 3 187 3 1 1 25 51 -2.460 -0.772 -2.105 0.027 0.317 -0.366 -0.059 D 186 184 3 187 3 0 0 20 45 -7.083 -2.596 -0.274 IL 187 187 3 187 3 1 1 27 52 -1.050 -1.018 -5.417 0.000 0.000 0.000 0.000 [ MATL 49 ] 57 - a - - - ML 188 187 3 190 3 1 1 16 34 -8.169 -0.018 -6.824 0.692 -0.477 -0.504 -0.058 D 189 187 3 190 3 0 0 15 33 -8.492 -0.542 -1.689 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 58 - u - - - ML 191 190 3 193 3 1 1 14 33 -8.539 -0.014 -7.193 0.028 0.016 -0.201 0.137 D 192 190 3 193 3 0 0 14 33 -7.078 -1.116 -0.913 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 59 - u - - - ML 194 193 3 196 3 1 1 13 31 -8.596 -0.013 -7.250 -0.376 -0.344 0.185 0.384 D 195 193 3 196 3 0 0 13 31 -6.572 -1.068 -0.964 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 60 - g - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 -0.065 -0.930 0.870 -0.533 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Betaproteobacteria_toxic_sRNA ACC RF02278 DESC Betaproteobacteria toxic small RNA LENG 64 MAXL 135 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:56:25 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 51 EFFN 7.853577 CKSUM 2729869815 STATS LOCAL MSV -8.1166 0.71924 STATS LOCAL VITERBI -9.0606 0.71924 STATS LOCAL FORWARD -3.4886 0.71924 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.90861 1.21171 1.53501 1.08301 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 0.00000 * 1 3.13157 2.79537 3.31930 0.15189 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 2 4.10284 5.13348 0.03288 4.61251 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 3 4.08511 3.84422 4.63598 0.04911 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 4 4.49684 0.04047 4.91648 3.85397 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 5 4.08511 3.84422 4.63598 0.04911 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 6 4.49684 0.04047 4.91648 3.85397 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 7 4.49684 0.04047 4.91648 3.85397 7 C - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 8 5.03782 3.69190 4.97404 0.03908 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 9 4.87088 0.04482 4.80975 3.57505 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 10 4.21418 0.12780 4.09443 2.42453 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 11 0.05877 4.65559 3.31896 4.47581 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 12 2.37887 0.76025 2.58130 1.01027 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.21732 4.71897 1.67985 1.46634 0.26236 1.09861 0.40547 13 2.44993 0.81285 1.09056 2.00933 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.20172 4.52359 1.76125 1.46634 0.26236 0.36570 1.18323 14 2.42958 0.89354 2.29841 0.91055 14 c - - < 1.38629 1.38629 1.38629 1.38629 0.27844 4.52403 1.46019 1.46634 0.26236 3.12881 0.04476 15 2.68731 0.42050 2.49202 1.64778 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.02825 4.27384 4.27384 1.46634 0.26236 0.12512 2.14042 16 3.49732 2.91526 4.01321 0.10819 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01852 4.69103 4.69103 1.46634 0.26236 0.39833 1.11304 17 4.49684 0.04047 4.91648 3.85397 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 18 3.21945 0.12344 4.13908 2.80986 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.07289 4.71897 2.79086 1.46634 0.26236 1.09861 0.40547 19 2.95730 2.47162 3.05848 0.20256 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04404 4.66510 3.39113 1.46634 0.26236 2.18341 0.11952 20 3.85861 0.10579 4.38178 2.70628 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.35317 1.73048 2.11744 0.73139 0.65632 0.79593 0.59995 21 1.42217 1.01064 2.61583 1.13408 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02099 4.56748 4.56748 1.46634 0.26236 0.11278 2.23818 22 1.26168 2.70784 2.94831 0.51464 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04646 4.71897 3.31111 1.46634 0.26236 1.09861 0.40547 23 1.47179 2.53605 0.62901 1.84398 25 G - - > 1.38629 1.38629 1.38629 1.38629 0.01852 4.69103 4.69103 1.46634 0.26236 0.39833 1.11304 24 1.01689 2.41672 1.14550 1.46532 26 a - - > 1.38629 1.38629 1.38629 1.38629 0.08752 3.13888 3.20735 0.37080 1.17177 1.09861 0.40547 25 2.12248 2.01428 0.81397 1.19153 28 g - - > 1.38629 1.38629 1.38629 1.38629 0.01860 4.68693 4.68693 1.46634 0.26236 1.87703 0.16611 26 1.13055 2.77764 0.66087 2.31712 29 G - - > 1.38629 1.38629 1.38629 1.38629 0.01860 4.68693 4.68693 1.46634 0.26236 0.36541 1.18389 27 4.66809 3.73610 4.45938 0.04584 30 U - - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 28 2.61418 4.23120 0.11282 3.96736 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 29 3.82680 4.92449 0.03936 4.65074 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 30 0.04740 5.09133 3.48969 4.64250 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 31 4.08511 3.84422 4.63598 0.04911 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 32 2.78976 3.18619 3.77081 0.13444 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 33 1.35001 0.94051 2.29858 1.38657 36 c - - - 1.38629 1.38629 1.38629 1.38629 0.37725 1.18637 4.71897 0.40874 1.09210 1.09861 0.40547 34 0.67916 2.61594 1.10675 2.41656 40 A - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 35 1.73728 2.06106 0.47077 2.62882 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 36 3.81379 0.17183 3.07692 2.41119 42 C - - < 1.38629 1.38629 1.38629 1.38629 0.05404 3.13081 4.71897 0.36808 1.17785 1.09861 0.40547 37 3.71479 0.18639 2.64601 2.59352 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 38 2.42862 0.21914 3.44953 2.56560 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 39 1.53509 2.43451 0.47438 2.59491 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 40 1.49658 1.37714 1.13435 1.59862 47 g - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 41 1.44935 1.41085 1.39728 1.29436 48 u - - < 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 42 1.89810 0.66619 2.36975 1.41476 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 43 1.80359 0.58595 2.69115 1.55631 50 C - - _ 1.38629 1.38629 1.38629 1.38629 0.11049 4.71897 2.34670 1.46634 0.26236 1.09861 0.40547 44 1.11790 1.64638 1.61199 1.27012 51 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01974 4.62822 4.62822 1.46634 0.26236 1.47837 0.25878 45 1.42315 1.05821 1.62724 1.53480 52 c - - _ 1.38629 1.38629 1.38629 1.38629 0.68475 1.51212 1.28974 0.85311 0.55528 2.38149 0.09697 46 0.84455 1.73603 1.77447 1.49407 57 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02648 4.33772 4.33772 1.46634 0.26236 0.29225 1.37273 47 1.41972 1.30936 1.48866 1.33731 58 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01936 4.64719 4.64719 1.46634 0.26236 0.59639 0.80027 48 1.83708 1.62247 1.15843 1.11070 59 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01848 4.69335 4.69335 1.46634 0.26236 0.41977 1.07059 49 1.52431 2.13784 0.64434 1.97103 60 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 50 1.38988 1.46597 1.34815 1.34584 61 u - - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 51 1.83712 1.26686 1.23320 1.31807 62 g - - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 52 2.86235 0.57737 2.36429 1.24661 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 53 2.84939 3.65491 0.19746 2.34923 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03829 4.71897 3.55274 1.46634 0.26236 1.09861 0.40547 54 2.91569 2.71727 0.16287 3.50399 65 G - - > 1.38629 1.38629 1.38629 1.38629 0.05516 3.11089 4.69905 0.36808 1.17785 1.65056 0.21312 55 2.93079 3.17137 0.12913 3.65579 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.01838 4.69905 4.69905 1.46634 0.26236 1.65056 0.21312 56 2.91497 0.53499 1.96579 1.51379 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.01838 4.69905 4.69905 1.46634 0.26236 0.48432 0.95741 57 2.60371 1.23818 2.46720 0.59553 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 58 3.02768 2.67699 2.95402 0.18552 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 59 2.73242 2.59019 3.57127 0.18415 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 60 3.18436 3.11852 3.11786 0.13912 72 U - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 61 2.85008 3.20290 3.79364 0.12897 73 U - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 62 2.91941 2.46003 3.35863 0.19138 74 U - - : 1.38629 1.38629 1.38629 1.38629 0.01801 4.71897 4.71897 1.46634 0.26236 1.09861 0.40547 63 2.74630 2.59388 3.57638 0.18257 75 U - - : 1.38629 1.38629 1.38629 1.38629 0.05809 4.71897 3.04678 1.46634 0.26236 1.09861 0.40547 64 2.10306 1.38593 2.27871 0.64357 76 U - - : 1.38629 1.38629 1.38629 1.38629 0.00941 4.67030 * 1.46634 0.26236 0.00000 * //