INFERNAL1/a [1.1.4 | Dec 2020] NAME NsiR1 ACC RF02399 DESC Nitrogen stress-induced RNA 1 STATES 189 NODES 52 CLEN 60 W 80 ALPH RNA RF no CONS yes MAP yes DATE Tue Mar 4 07:40:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 17 EFFN 4.386963 CKSUM 3201905534 NULL 0.000 0.000 0.000 0.000 GA 39.00 TC 39.50 NC 38.40 EFP7GF -13.2793 0.71922 ECMLC 0.70318 -7.30995 1.52789 1600000 600016 0.002000 ECMGC 0.42703 -17.90516 -4.26241 1600000 135578 0.002950 ECMLI 0.57096 -8.05942 2.55081 1600000 513043 0.002339 ECMGI 0.43204 -13.51234 -1.03338 1600000 87810 0.004555 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 80 104 -7.712 -7.919 -0.031 -6.333 IL 1 1 2 1 4 1 17 84 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 17 83 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 16 81 105 -9.038 -0.012 -7.356 -0.762 -1.636 -2.216 1.523 D 4 2 3 5 3 0 13 79 103 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 16 81 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 68 - U - - MR 6 5 3 8 3 1 15 80 104 -9.038 -0.012 -7.356 -1.137 -1.561 -1.556 1.519 D 7 5 3 8 3 0 11 78 102 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 15 80 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 67 - U - - MR 9 8 3 11 3 1 15 79 103 -9.038 -0.012 -7.356 -0.710 -0.596 -1.879 1.296 D 10 8 3 11 3 0 11 77 101 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 14 79 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 66 - U - - MR 12 11 3 14 3 1 14 78 102 -9.038 -0.012 -7.356 -2.845 -2.621 -3.622 1.855 D 13 11 3 14 3 0 10 76 100 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 13 78 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 65 - U - - MR 15 14 3 17 3 1 13 77 101 -9.038 -0.012 -7.356 -2.845 -2.621 -3.622 1.855 D 16 14 3 17 3 0 9 75 99 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 12 77 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 64 - U - - MR 18 17 3 20 3 1 12 76 100 -9.038 -0.012 -7.356 -2.845 -2.621 -3.622 1.855 D 19 17 3 20 3 0 9 74 98 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 12 76 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 63 - U - - MR 21 20 3 23 3 1 11 75 99 -9.038 -0.012 -7.356 -2.845 -2.621 -3.622 1.855 D 22 20 3 23 3 0 8 73 97 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 11 75 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 62 - U - - MR 24 23 3 26 3 1 10 74 98 -9.038 -0.012 -7.356 -2.845 -2.621 -3.622 1.855 D 25 23 3 26 3 0 8 72 96 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 10 74 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 61 - U - - MR 27 26 3 29 2 1 9 73 97 -9.187 -0.002 -0.085 -0.615 -1.539 1.043 D 28 26 3 29 2 0 8 72 96 -4.432 -0.068 IR 29 29 3 29 2 1 9 73 97 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 10 ] - - - - - - B 30 29 3 31 69 0 8 72 96 [ BEGL 11 ] - - - - - - S 31 30 1 32 4 0 0 25 44 -0.033 -7.269 -6.676 -7.316 [ MATP 12 ] 2 13 G C - - MP 32 31 1 36 6 2 2 25 44 -9.448 -9.387 -0.017 -8.164 -8.444 -8.839 -5.139 0.297 -5.213 -0.079 -6.152 -5.009 -1.314 -5.667 -4.753 3.613 -5.057 -1.071 -1.587 -4.748 -3.350 -4.120 ML 33 31 1 36 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 1 36 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 1 36 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 3 12 G C - - MP 38 37 6 42 6 2 2 23 42 -9.448 -9.387 -0.017 -8.164 -8.444 -8.839 -6.106 -3.770 -6.487 -0.779 -7.102 -5.196 -2.132 -6.720 -5.117 3.845 -5.381 -1.550 -2.494 -5.329 -4.269 -5.346 ML 39 37 6 42 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 4 11 U A - - MP 44 43 6 48 4 2 2 21 40 -7.712 -7.919 -0.031 -6.333 -6.150 -5.997 -5.756 -2.218 -4.372 -6.137 -0.048 -5.173 -5.749 -2.159 -6.032 -3.861 3.811 -6.187 -2.000 -4.240 ML 45 43 6 48 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 47 43 6 48 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 48 48 5 48 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 49 49 6 49 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 5 - A - - - ML 50 49 6 52 3 1 1 18 37 -8.685 -0.012 -7.339 1.902 -3.793 -3.299 -3.476 D 51 49 6 52 3 0 0 18 37 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 6 - G - - - ML 53 52 3 55 3 1 1 17 36 -8.685 -0.012 -7.339 -2.981 -4.368 1.907 -3.721 D 54 52 3 55 3 0 0 17 35 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 7 - A - - - ML 56 55 3 58 3 1 1 16 34 -8.685 -0.012 -7.339 1.902 -3.793 -3.299 -3.476 D 57 55 3 58 3 0 0 16 34 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 8 - U - - - ML 59 58 3 61 3 1 1 14 33 -8.685 -0.012 -7.339 -2.845 -2.621 -3.622 1.855 D 60 58 3 61 3 0 0 15 33 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 9 - G - - - ML 62 61 3 64 3 1 1 13 31 -8.685 -0.012 -7.339 -2.981 -4.368 1.907 -3.721 D 63 61 3 64 3 0 0 13 32 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 10 - C - - - ML 65 64 3 67 2 1 1 1 1 * 0.000 -3.422 1.880 -4.190 -2.547 D 66 64 3 67 2 0 0 0 0 * 0.000 IL 67 67 3 67 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 21 ] - - - - - - E 68 67 3 -1 0 0 0 0 0 [ BEGR 22 ] - - - - - - S 69 30 1 70 3 0 0 59 83 -8.685 -0.012 -7.339 IL 70 70 2 70 3 1 1 62 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 14 - C - - - ML 71 70 2 73 3 1 1 59 83 -8.685 -0.012 -7.339 -3.422 1.880 -4.190 -2.547 D 72 70 2 73 3 0 0 58 82 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 61 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 15 - U - - - ML 74 73 3 76 3 1 1 58 82 -8.685 -0.012 -7.339 -2.845 -2.621 -3.622 1.855 D 75 73 3 76 3 0 0 57 81 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 60 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 16 - G - - - ML 77 76 3 79 3 1 1 57 81 -8.685 -0.012 -7.339 -2.981 -4.368 1.907 -3.721 D 78 76 3 79 3 0 0 56 80 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 59 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 17 - A - - - ML 80 79 3 82 3 1 1 56 80 -8.685 -0.012 -7.339 1.591 -2.475 -0.810 -2.072 D 81 79 3 82 3 0 0 55 79 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 58 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 18 - U - - - ML 83 82 3 85 3 1 1 55 79 -8.685 -0.012 -7.339 -1.280 -1.816 -2.514 1.646 D 84 82 3 85 3 0 0 53 77 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 57 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 19 - a - - - ML 86 85 3 88 3 1 1 54 78 -1.515 -1.129 -2.375 0.651 -1.131 -0.905 0.525 D 87 85 3 88 3 0 0 49 73 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 55 79 -1.108 -0.942 -6.013 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - U - - - ML 89 88 3 91 3 1 1 48 67 -8.387 -0.015 -7.041 -0.829 -1.197 -0.512 1.201 D 90 88 3 91 3 0 0 46 66 -8.117 -1.203 -0.831 IL 91 91 3 91 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - a - - - ML 92 91 3 94 3 1 1 47 66 -8.537 -0.014 -7.191 0.922 -1.160 -0.890 0.161 D 93 91 3 94 3 0 0 46 65 -7.487 -0.469 -1.879 IL 94 94 3 94 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - a - - - ML 95 94 3 97 3 1 1 46 65 -4.517 -0.074 -7.339 0.580 -0.423 -0.237 -0.135 D 96 94 3 97 3 0 0 44 63 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 47 66 -1.653 -0.659 -4.353 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - a - - - ML 98 97 3 100 3 1 1 44 64 -8.685 -0.012 -7.339 0.384 0.190 -0.689 -0.097 D 99 97 3 100 3 0 0 43 62 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - u - - - ML 101 100 3 103 5 1 1 43 63 -3.493 -0.154 -7.556 -7.768 -8.659 0.102 -0.521 -1.039 0.802 D 102 100 3 103 5 0 0 42 61 -4.959 -0.803 -4.221 -2.596 -2.508 IL 103 103 3 103 5 1 1 45 64 -1.491 -0.766 -4.962 -6.794 -6.068 0.000 0.000 0.000 0.000 [ MATP 34 ] 31 60 c g - - MP 104 103 3 108 6 2 2 41 60 -9.448 -9.387 -0.017 -8.164 -8.444 -8.839 -3.017 -3.011 -3.133 0.588 -1.179 -3.973 2.600 -3.094 -3.118 0.970 -3.660 -0.311 1.596 -3.291 0.176 -2.090 ML 105 103 3 108 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 106 103 3 108 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 107 103 3 108 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 108 108 5 108 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 109 109 6 109 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 32 59 C G - - MP 110 109 6 114 6 2 2 39 58 -9.448 -9.387 -0.045 -5.467 -8.444 -8.839 -6.150 -6.191 -5.544 -2.361 -4.005 -5.744 3.847 -4.985 -5.700 -2.270 -5.733 -4.222 -0.715 -6.108 -1.805 -4.506 ML 111 109 6 114 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 6 114 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 113 109 6 114 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 33 58 C G - - MP 116 115 6 120 6 2 2 37 56 -9.420 -9.360 -0.017 -8.136 -8.416 -8.811 -4.924 -4.964 -4.542 -1.104 -3.118 -4.893 3.469 -3.952 -4.579 -0.959 -4.837 -2.977 0.404 -4.930 0.981 -3.391 ML 117 115 6 120 6 1 1 36 55 -6.653 -6.999 -0.866 -1.408 -6.849 -4.378 -0.027 0.416 -0.725 0.110 MR 118 115 6 120 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 34 57 C G - - MP 122 121 6 126 6 2 2 35 54 -9.448 -9.387 -0.017 -8.164 -8.444 -8.839 -6.150 -6.191 -5.544 -2.361 -4.005 -5.744 3.847 -4.985 -5.700 -2.270 -5.733 -4.222 -0.715 -6.108 -1.805 -4.506 ML 123 121 6 126 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 35 56 c g - - MP 128 127 6 132 6 2 2 33 52 -9.448 -9.387 -0.017 -8.164 -8.444 -8.839 -3.774 -3.716 -3.764 0.046 -2.862 -4.468 2.346 -3.508 -3.745 0.741 -4.210 -1.671 1.619 -3.976 1.992 -2.633 ML 129 127 6 132 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 36 55 a u - - MP 134 133 6 138 6 2 2 31 50 -9.448 -9.387 -0.055 -8.164 -5.104 -8.839 -4.210 -3.016 -4.325 2.818 -5.487 -5.997 -1.071 -4.506 -4.111 1.375 -4.686 2.254 -1.238 -4.942 -2.965 -3.073 ML 135 133 6 138 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 27 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 37 54 G C - - MP 140 139 6 144 6 2 2 29 48 -9.410 -9.349 -0.092 -4.214 -8.405 -8.800 -4.486 -3.033 -4.422 0.714 -5.084 -4.700 0.257 -4.879 -4.415 3.482 -4.718 -0.704 -0.666 -4.198 -2.359 -3.347 ML 141 139 6 144 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 28 47 -7.456 -6.185 -0.967 -6.163 -1.297 -4.377 -0.151 -0.477 -0.767 0.842 D 143 139 6 144 6 0 0 25 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 38 53 c g - - MP 146 145 6 150 6 2 2 27 46 -9.376 -9.315 -0.081 -4.443 -8.371 -8.766 -2.476 -2.570 -2.629 1.203 -1.356 -3.472 2.330 -2.754 -2.651 0.796 -3.206 -0.884 1.539 -2.779 0.453 -0.826 ML 147 145 6 150 6 1 1 26 45 -7.118 -7.464 -0.571 -1.873 -7.314 -4.843 -0.418 -0.643 -1.063 1.093 MR 148 145 6 150 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 39 52 c g - - MP 152 151 6 156 6 2 2 25 44 -9.389 -9.328 -0.138 -8.105 -5.099 -4.179 -1.743 -1.929 -1.936 1.009 -1.883 -2.783 1.731 -2.256 -1.082 1.065 -2.565 -0.556 1.474 -0.881 0.901 -0.696 ML 153 151 6 156 6 1 1 24 44 -6.996 -7.343 -0.634 -1.751 -7.192 -4.722 -0.175 0.209 -0.881 0.501 MR 154 151 6 156 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 40 51 g c - - MP 158 157 6 162 6 2 2 23 43 -9.334 -9.273 -0.062 -4.911 -8.330 -8.725 -1.092 -2.346 -2.807 1.494 -2.872 -3.581 1.367 -3.141 -2.945 2.444 -3.430 -0.362 1.012 -2.867 -0.734 -1.912 ML 159 157 6 162 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 23 42 -7.439 -6.168 -0.983 -6.147 -1.280 -4.360 -0.136 -0.470 -0.751 0.827 D 161 157 6 162 6 0 0 22 42 -10.112 -8.810 -4.607 -5.289 -5.307 -0.144 IL 162 162 5 162 6 1 1 23 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 41 50 g c - - MP 164 163 6 168 4 2 2 21 40 -7.473 -7.680 -0.037 -6.094 -2.950 -2.381 -1.416 1.676 -3.196 -3.749 0.854 -3.378 -3.172 2.589 -3.625 -0.283 1.085 -3.026 -0.971 -2.071 ML 165 163 6 168 4 1 1 23 42 -4.182 -1.722 -0.931 -3.094 1.027 -0.895 -0.639 -0.355 MR 166 163 6 168 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 22 42 -5.581 -0.915 -3.278 -1.533 IL 168 168 5 168 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 23 42 -1.393 -1.319 -2.194 0.000 0.000 0.000 0.000 [ MATL 45 ] 42 - c - - - ML 170 169 6 172 3 1 1 18 37 -8.541 -0.364 -2.181 -0.078 0.933 -1.689 -0.263 D 171 169 6 172 3 0 0 17 36 -7.465 -2.978 -0.205 IL 172 172 3 172 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - U - - - ML 173 172 3 175 3 1 1 17 36 -8.194 -0.093 -4.085 -1.192 -0.605 -1.940 1.403 D 174 172 3 175 3 0 0 16 34 -8.606 -2.312 -0.329 IL 175 175 3 175 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 44 - a - - - ML 176 175 3 178 3 1 1 16 35 -8.225 -0.017 -6.879 0.934 -1.209 -0.166 -0.386 D 177 175 3 178 3 0 0 14 33 -8.542 -4.055 -0.094 IL 178 178 3 178 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 45 - A - - - ML 179 178 3 181 3 1 1 15 33 -8.225 -0.017 -6.879 1.052 -0.802 -1.214 -0.118 D 180 178 3 181 3 0 0 13 32 -8.542 -4.055 -0.094 IL 181 181 3 181 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 46 - c - - - ML 182 181 3 184 3 1 1 13 31 -8.225 -0.017 -6.879 0.080 0.496 -0.808 -0.056 D 183 181 3 184 3 0 0 12 30 -8.542 -2.288 -0.335 IL 184 184 3 184 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 47 - a - - - ML 185 184 3 187 2 1 1 1 1 * 0.000 0.928 -1.131 -0.465 -0.126 D 186 184 3 187 2 0 0 0 0 * 0.000 IL 187 187 3 187 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 188 187 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME NsiR1 ACC RF02399 DESC Nitrogen stress-induced RNA 1 LENG 60 MAXL 131 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Mar 4 07:40:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED NSEQ 17 EFFN 6.893799 CKSUM 3201905534 STATS LOCAL MSV -7.9182 0.71922 STATS LOCAL VITERBI -8.7713 0.71922 STATS LOCAL FORWARD -3.1745 0.71922 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.62180 1.47829 1.38988 1.12293 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 0.00000 * 1 2.03227 2.88528 3.33890 0.25148 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 2 2.00445 4.11723 0.18536 4.00802 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 3 3.51048 4.51776 0.05341 4.49044 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 4 4.76527 3.45473 4.69818 0.05048 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 5 0.03781 4.59340 4.22075 4.39841 5 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 6 3.96389 4.97719 0.03798 4.47541 6 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 7 0.03781 4.59340 4.22075 4.39841 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 8 3.92383 3.69855 4.47179 0.05758 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 9 3.96389 4.97719 0.03798 4.47541 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 10 4.34762 0.04693 4.79270 3.70408 10 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 11 0.05881 4.87738 3.27191 4.45952 11 A - - > 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 12 4.55210 0.06716 4.37415 3.17463 12 C - - > 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 13 4.13402 0.10039 3.93124 2.81551 13 C - - > 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 14 4.34762 0.04693 4.79270 3.70408 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 15 3.92383 3.69855 4.47179 0.05758 15 U - - - 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 16 3.96389 4.97719 0.03798 4.47541 16 G - - - 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 17 0.22854 3.54799 1.96540 3.34033 17 A - - - 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 18 2.46622 3.00930 3.54768 0.17796 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 19 0.88777 2.35868 2.09853 0.99089 19 a - - - 1.38629 1.38629 1.38629 1.38629 0.96993 0.91360 1.51499 0.70974 0.67682 1.09861 0.40547 20 2.26488 2.49386 1.75604 0.44498 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.02435 4.42068 4.42068 1.46634 0.26236 0.77491 0.61756 21 0.68131 2.37911 2.09742 1.27784 23 A - - - 1.38629 1.38629 1.38629 1.38629 0.02157 4.54051 4.54051 1.46634 0.26236 0.14776 1.98513 22 0.95398 1.67878 1.53956 1.54310 24 a - - - 1.38629 1.38629 1.38629 1.38629 0.06771 2.88291 4.65680 0.31046 1.32092 1.09861 0.40547 23 1.10773 1.19269 1.90297 1.52710 26 a - - - 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 24 1.31555 1.79625 2.18813 0.79048 27 u - - - 1.38629 1.38629 1.38629 1.38629 0.13035 2.18293 4.65680 0.86054 0.54980 1.09861 0.40547 25 2.32240 0.78244 1.73779 1.31393 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 26 4.61774 0.05588 4.56790 3.37878 32 C - - < 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 27 3.61984 0.28539 3.56533 1.64400 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 28 4.43805 0.06084 4.45017 3.33723 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 29 2.82176 1.10062 2.16455 0.70718 35 u - - < 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 30 0.70760 4.00186 0.76828 3.68547 36 a - - < 1.38629 1.38629 1.38629 1.38629 0.07710 4.65680 2.73788 1.46634 0.26236 1.09861 0.40547 31 2.28500 2.61830 0.24865 3.09128 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.02031 4.60000 4.60000 1.46634 0.26236 0.25738 1.48315 32 1.75906 1.02539 1.99472 1.09936 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 33 1.80512 1.38999 1.60551 0.95275 39 u - - < 1.38629 1.38629 1.38629 1.38629 0.19725 4.65680 1.77481 1.46634 0.26236 1.09861 0.40547 34 1.43207 1.78273 0.85710 1.78013 40 g - - < 1.38629 1.38629 1.38629 1.38629 0.02287 4.48242 4.48242 1.46634 0.26236 1.10459 0.40249 35 1.28817 2.28091 0.79497 1.76939 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.02150 4.54357 4.54357 1.46634 0.26236 2.65834 0.07264 36 1.48514 0.63238 2.85431 1.68952 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.30838 4.54357 1.36757 1.46634 0.26236 2.65834 0.07264 37 2.56824 1.89767 3.09405 0.31733 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.09193 4.26374 2.60686 1.46634 0.26236 1.66501 0.20972 38 0.67338 2.40043 1.48852 1.75081 44 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02783 4.28874 4.28874 1.46634 0.26236 3.56739 0.02864 39 0.57179 2.03135 2.42442 1.53341 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02783 4.28874 4.28874 1.46634 0.26236 3.56739 0.02864 40 1.35966 0.95119 2.00949 1.50097 46 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02783 4.28874 4.28874 1.46634 0.26236 0.67224 0.71450 41 0.67901 2.33447 1.73536 1.51558 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02248 4.49937 4.49937 1.46634 0.26236 0.11548 2.21582 42 1.90952 0.84912 1.92321 1.28043 50 c - - > 1.38629 1.38629 1.38629 1.38629 0.13473 4.65680 2.14943 1.46634 0.26236 1.09861 0.40547 43 1.80080 0.95458 1.65773 1.34982 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.12358 4.54357 2.24795 1.46634 0.26236 0.15097 1.96520 44 1.43325 1.66790 1.00414 1.57763 52 g - - > 1.38629 1.38629 1.38629 1.38629 0.14333 4.56817 2.09430 1.46634 0.26236 0.18349 1.78596 45 1.50757 2.13454 0.82816 1.49878 53 g - - > 1.38629 1.38629 1.38629 1.38629 0.02141 4.54786 4.54786 1.46634 0.26236 0.15573 1.93646 46 3.21466 0.30637 2.50476 1.95177 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 47 3.87954 2.04014 3.78743 0.19034 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 48 1.61491 2.27802 0.47074 2.60284 56 G - - > 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 49 3.64885 4.72809 0.04761 4.45448 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.06112 4.65680 2.99992 1.46634 0.26236 1.09861 0.40547 50 2.74251 3.78975 0.12310 3.54696 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.01999 4.61567 4.61567 1.46634 0.26236 0.32315 1.28687 51 3.64669 4.72418 0.04775 4.45032 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 52 1.48785 2.05860 0.70036 1.89643 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 53 1.47158 1.88592 2.67505 0.59812 61 U - - : 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 54 3.92383 3.69855 4.47179 0.05758 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 55 3.92383 3.69855 4.47179 0.05758 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 56 3.92383 3.69855 4.47179 0.05758 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 57 3.92383 3.69855 4.47179 0.05758 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 58 3.92383 3.69855 4.47179 0.05758 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 59 2.02308 1.86651 3.00335 0.41027 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.01918 4.65680 4.65680 1.46634 0.26236 1.09861 0.40547 60 2.43236 2.80469 2.61531 0.25039 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.00963 4.64726 * 1.46634 0.26236 0.00000 * //