INFERNAL1/a [1.1.4 | Dec 2020] NAME NsiR4 ACC RF02677 DESC Nitrogen stress-induced RNA 4 STATES 204 NODES 59 CLEN 65 W 82 ALPH RNA RF no CONS yes MAP yes DATE Mon Nov 21 14:46:46 2016 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.957031 CKSUM 788737166 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.60 NC 32.90 EFP7GF -8.6318 0.71905 ECMLC 0.69084 -8.51667 0.91614 1600000 811518 0.001479 ECMGC 0.39512 -17.20445 -3.12886 1600000 104091 0.003843 ECMLI 0.61623 -8.17109 1.84657 1600000 575635 0.002085 ECMGI 0.42704 -12.36018 0.00064 1600000 78435 0.005100 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 82 102 -6.959 -7.166 -0.053 -5.580 IL 1 1 2 1 4 1 20 86 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 85 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 18 82 102 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 4 2 3 5 3 0 16 81 101 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 84 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 2 1 17 81 101 -8.369 -0.004 1.724 -2.393 -2.023 -1.937 D 7 5 3 8 2 0 16 80 100 -8.445 -0.004 IL 8 8 3 8 2 1 17 82 102 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 3 ] - - - - - - B 9 8 3 10 45 0 16 80 100 [ BEGL 4 ] - - - - - - S 10 9 1 11 4 0 0 25 43 -0.044 -6.839 -6.247 -6.887 [ MATP 5 ] 3 13 G C - - MP 11 10 1 15 6 2 2 25 44 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.766 -3.106 -4.868 0.184 -5.267 -4.703 -0.626 -5.112 -4.344 3.644 -4.679 -0.805 -1.010 -4.484 -2.664 -3.744 ML 12 10 1 15 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 13 10 1 15 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 14 10 1 15 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 15 15 5 15 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 16 16 6 16 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 12 A U - - MP 17 16 6 21 6 2 2 23 42 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.814 -2.840 -3.831 3.346 -4.181 -5.245 0.121 -3.872 -3.722 1.054 -4.271 -0.312 -0.297 -4.429 -1.820 -2.664 ML 18 16 6 21 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 19 16 6 21 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 20 16 6 21 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 21 21 5 21 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 22 22 6 22 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 11 C G - - MP 23 22 6 27 4 2 2 21 39 -6.959 -7.166 -0.053 -5.580 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 24 22 6 27 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 25 22 6 27 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 26 22 6 27 4 0 0 20 39 -4.568 -4.250 -2.265 -0.520 IL 27 27 5 27 4 1 1 23 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 28 28 6 28 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - A - - - ML 29 28 6 31 3 1 1 18 36 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 30 28 6 31 3 0 0 17 36 -6.174 -1.687 -0.566 IL 31 31 3 31 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - U - - - ML 32 31 3 34 3 1 1 16 35 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 33 31 3 34 3 0 0 16 34 -6.174 -1.687 -0.566 IL 34 34 3 34 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - A - - - ML 35 34 3 37 3 1 1 15 33 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 36 34 3 37 3 0 0 15 33 -6.174 -1.687 -0.566 IL 37 37 3 37 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 9 - A - - - ML 38 37 3 40 3 1 1 13 31 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 39 37 3 40 3 0 0 13 32 -6.174 -1.687 -0.566 IL 40 40 3 40 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - A - - - ML 41 40 3 43 2 1 1 1 1 * 0.000 1.724 -2.393 -2.023 -1.937 D 42 40 3 43 2 0 0 0 0 * 0.000 IL 43 43 3 43 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 13 ] - - - - - - E 44 43 3 -1 0 0 0 0 0 [ BEGR 14 ] - - - - - - S 45 9 1 46 3 0 6 69 89 -7.975 -0.020 -6.629 IL 46 46 2 46 3 1 6 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - A - - - ML 47 46 2 49 3 1 7 69 88 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 48 46 2 49 3 0 1 67 87 -6.174 -1.687 -0.566 IL 49 49 3 49 3 1 5 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 50 49 3 52 3 1 6 68 87 -2.815 -0.238 -6.629 1.724 -2.393 -2.023 -1.937 D 51 49 3 52 3 0 0 65 85 -6.174 -1.687 -0.566 IL 52 52 3 52 3 1 5 68 88 -1.846 -0.559 -4.546 0.000 0.000 0.000 0.000 [ MATL 17 ] 17 - U - - - ML 53 52 3 55 3 1 6 66 86 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 54 52 3 55 3 0 0 65 84 -6.174 -1.687 -0.566 IL 55 55 3 55 3 1 4 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 18 - A - - - ML 56 55 3 58 3 1 5 65 85 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 57 55 3 58 3 0 0 64 83 -6.174 -1.687 -0.566 IL 58 58 3 58 3 1 4 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - U - - - ML 59 58 3 61 3 1 5 64 84 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 60 58 3 61 3 0 0 63 82 -6.174 -1.687 -0.566 IL 61 61 3 61 3 1 3 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - C - - - ML 62 61 3 64 3 1 4 63 83 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 63 61 3 64 3 0 0 61 81 -6.174 -1.687 -0.566 IL 64 64 3 64 3 1 2 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - A - - - ML 65 64 3 67 3 1 4 62 81 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 66 64 3 67 3 0 0 60 80 -6.174 -1.687 -0.566 IL 67 67 3 67 3 1 2 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - C - - - ML 68 67 3 70 3 1 3 61 80 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 69 67 3 70 3 0 0 59 79 -6.174 -1.687 -0.566 IL 70 70 3 70 3 1 2 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - C - - - ML 71 70 3 73 3 1 3 60 79 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 72 70 3 73 3 0 0 58 78 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 24 - C - - - ML 74 73 3 76 3 1 2 59 78 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 75 73 3 76 3 0 0 57 77 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 25 - U - - - ML 77 76 3 79 3 1 2 58 77 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 78 76 3 79 3 0 0 56 76 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 26 - C - - - ML 80 79 3 82 3 1 2 57 76 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 81 79 3 82 3 0 0 55 75 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - C - - - ML 83 82 3 85 3 1 1 56 75 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 84 82 3 85 3 0 0 54 74 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 86 85 3 88 3 1 1 54 74 -7.975 -0.020 -6.629 -1.603 -2.827 1.729 -2.214 D 87 85 3 88 3 0 0 53 73 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 89 88 3 91 3 1 1 53 73 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 90 88 3 91 3 0 0 52 72 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - U - - - ML 92 91 3 94 3 1 1 52 72 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 93 91 3 94 3 0 0 51 70 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - U - - - ML 95 94 3 97 3 1 1 51 71 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 96 94 3 97 3 0 0 50 69 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 32 - G - - - ML 98 97 3 100 3 1 1 50 69 -7.975 -0.020 -6.629 -1.603 -2.827 1.729 -2.214 D 99 97 3 100 3 0 0 49 68 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 33 - C - - - ML 101 100 3 103 3 1 1 49 68 -7.975 -0.020 -6.629 -1.767 1.631 -2.591 -1.175 D 102 100 3 103 3 0 0 48 67 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 51 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 34 - U - - - ML 104 103 3 106 3 1 1 48 67 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 105 103 3 106 3 0 0 47 66 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 50 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - U - - - ML 107 106 3 109 3 1 1 47 66 -7.975 -0.020 -6.629 0.010 -0.871 -1.232 1.015 D 108 106 3 109 3 0 0 46 65 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 110 109 3 112 3 1 1 46 65 -7.975 -0.232 -2.792 1.140 -1.452 -0.159 -0.900 D 111 109 3 112 3 0 0 45 64 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 113 112 3 115 3 1 1 45 64 -7.767 -0.024 -6.421 -1.131 -1.192 -1.843 1.499 D 114 112 3 115 3 0 0 43 62 -7.344 -2.857 -0.225 IL 115 115 3 115 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - c - - - ML 116 115 3 118 3 1 1 44 63 -7.767 -0.024 -6.421 -0.586 0.642 -1.357 0.467 D 117 115 3 118 3 0 0 42 61 -7.344 -2.857 -0.225 IL 118 118 3 118 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - c - - - ML 119 118 3 121 5 1 1 43 62 -6.923 -0.044 -6.738 -6.950 -7.842 -0.275 0.440 -0.096 -0.183 D 120 118 3 121 5 0 0 42 60 -5.728 -0.416 -4.989 -3.364 -3.277 IL 121 121 3 121 5 1 1 43 62 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 40 67 a u - - MP 122 121 3 126 6 2 2 42 61 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -2.899 -2.574 -2.997 2.773 -2.953 -3.954 0.941 0.197 -3.023 1.103 -3.558 -0.490 0.598 -3.249 -0.859 -2.057 ML 123 121 3 126 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 3 126 6 1 1 40 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 41 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 41 66 a u - - MP 128 127 6 132 6 2 2 40 59 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.350 -2.363 -3.469 2.448 -4.060 -4.748 0.182 -3.647 -3.324 1.593 -3.864 2.048 -0.074 -3.886 -1.708 -2.303 ML 129 127 6 132 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 38 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 42 65 g c - - MP 134 133 6 138 6 2 2 38 57 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.352 -2.360 -3.418 1.827 -3.947 -4.380 0.378 -3.697 -3.395 2.448 -3.869 1.700 0.109 -3.615 -1.537 -2.314 ML 135 133 6 138 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 43 64 C G - - MP 140 139 6 144 6 2 2 36 55 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -3.785 -3.757 -3.619 -0.042 -2.496 -4.138 3.008 -3.235 -3.641 0.177 -4.002 -1.787 1.119 -3.904 1.287 -2.514 ML 141 139 6 144 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 44 63 C G - - MP 146 145 6 150 6 2 2 34 53 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 147 145 6 150 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 45 62 G C - - MP 152 151 6 156 6 2 2 32 51 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.766 -3.106 -4.868 0.184 -5.267 -4.703 -0.626 -5.112 -4.344 3.644 -4.679 -0.805 -1.010 -4.484 -2.664 -3.744 ML 153 151 6 156 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 46 61 C G - - MP 158 157 6 162 6 2 2 30 49 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 159 157 6 162 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 47 60 C G - - MP 164 163 6 168 6 2 2 28 47 -9.112 -9.051 -0.021 -7.828 -8.107 -8.502 -4.578 -4.487 -4.263 -0.716 -2.975 -4.671 3.560 -3.788 -4.313 -0.480 -4.571 -2.434 0.537 -4.645 -0.682 -3.152 ML 165 163 6 168 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 48 59 c g - - MP 170 169 6 174 4 2 2 26 45 -6.959 -7.166 -0.053 -5.580 -3.341 -3.325 -3.286 0.150 -2.425 -3.889 2.605 1.666 -3.318 0.329 -3.728 -1.487 1.086 -3.535 -0.193 -2.281 ML 171 169 6 174 4 1 1 26 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 4 1 1 26 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 173 169 6 174 4 0 0 25 44 -4.568 -4.250 -2.265 -0.520 IL 174 174 5 174 4 1 1 28 47 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 175 175 6 175 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 49 - A - - - ML 176 175 6 178 3 1 1 23 42 -7.975 -0.020 -6.629 1.185 -1.475 -0.249 -0.930 D 177 175 6 178 3 0 0 22 41 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 50 - U - - - ML 179 178 3 181 3 1 1 22 40 -7.975 -0.020 -6.629 -0.791 -0.096 -1.543 1.100 D 180 178 3 181 3 0 0 21 40 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 51 - u - - - ML 182 181 3 184 3 1 1 20 39 -7.975 -0.020 -6.629 0.557 -0.851 -1.058 0.579 D 183 181 3 184 3 0 0 20 38 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 52 - g - - - ML 185 184 3 187 3 1 1 19 38 -2.855 -0.232 -6.629 -0.437 -0.473 0.907 -0.588 D 186 184 3 187 3 0 0 17 36 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 20 38 -1.836 -0.563 -4.536 0.000 0.000 0.000 0.000 [ MATL 53 ] 54 - U - - - ML 188 187 3 190 3 1 1 18 36 -7.975 -0.020 -6.629 -1.505 -1.498 -2.240 1.624 D 189 187 3 190 3 0 0 17 36 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 55 - u - - - ML 191 190 3 193 3 1 1 16 35 -7.975 -0.020 -6.629 -0.713 0.397 -1.488 0.780 D 192 190 3 193 3 0 0 16 34 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 56 - u - - - ML 194 193 3 196 3 1 1 15 33 -7.975 -0.020 -6.629 -0.719 0.535 -1.502 0.669 D 195 193 3 196 3 0 0 15 33 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 57 - A - - - ML 197 196 3 199 3 1 1 13 31 -7.975 -0.020 -6.629 1.724 -2.393 -2.023 -1.937 D 198 196 3 199 3 0 0 13 32 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 58 - G - - - ML 200 199 3 202 2 1 1 1 1 * 0.000 -1.603 -2.827 1.729 -2.214 D 201 199 3 202 2 0 0 0 0 * 0.000 IL 202 202 3 202 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 203 202 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME NsiR4 ACC RF02677 DESC Nitrogen stress-induced RNA 4 LENG 65 MAXL 149 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Nov 21 14:46:46 2016 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 4 EFFN 2.410156 CKSUM 788737166 STATS LOCAL MSV -8.2806 0.71905 STATS LOCAL VITERBI -8.8129 0.71905 STATS LOCAL FORWARD -3.6230 0.71905 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30725 1.35077 1.52719 1.37337 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 0.00000 * 1 0.14948 3.27243 2.99326 2.97971 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 2 0.14948 3.27243 2.99326 2.97971 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 3 2.61291 3.28136 0.16336 3.22343 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 4 0.32796 2.81483 1.86109 2.74590 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 5 3.23379 0.23185 3.01048 2.13487 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 6 0.14948 3.27243 2.99326 2.97971 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 7 2.64105 2.59973 3.15970 0.20828 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 8 0.14948 3.27243 2.99326 2.97971 8 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 9 0.14948 3.27243 2.99326 2.97971 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 10 0.14948 3.27243 2.99326 2.97971 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 11 2.41018 3.17352 0.20108 2.98584 11 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 12 2.96219 2.15772 2.62131 0.27444 12 U - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 13 3.39179 0.19717 3.09904 2.30050 13 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 14 0.14948 3.27243 2.99326 2.97971 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 15 0.14948 3.27243 2.99326 2.97971 15 A - - - 1.38629 1.38629 1.38629 1.38629 0.21507 1.74782 3.94446 0.20921 1.66721 1.09861 0.40547 16 2.64105 2.59973 3.15970 0.20828 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 17 0.14948 3.27243 2.99326 2.97971 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 18 2.64105 2.59973 3.15970 0.20828 19 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 19 2.88654 0.19347 3.46279 2.42145 20 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 20 0.14948 3.27243 2.99326 2.97971 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 21 2.88654 0.19347 3.46279 2.42145 22 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 22 2.88654 0.19347 3.46279 2.42145 23 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 23 2.88654 0.19347 3.46279 2.42145 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 24 2.64105 2.59973 3.15970 0.20828 25 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 25 2.88654 0.19347 3.46279 2.42145 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 26 2.88654 0.19347 3.46279 2.42145 27 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 27 2.73434 3.61685 0.14258 3.19228 28 G - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 28 0.14948 3.27243 2.99326 2.97971 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 29 2.64105 2.59973 3.15970 0.20828 30 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 30 2.64105 2.59973 3.15970 0.20828 31 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 31 2.73434 3.61685 0.14258 3.19228 32 G - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 32 2.88654 0.19347 3.46279 2.42145 33 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 33 2.64105 2.59973 3.15970 0.20828 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 34 1.39838 2.06222 2.32058 0.63939 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 35 0.55683 2.50080 1.48894 2.12575 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.20967 3.94446 1.77323 1.46634 0.26236 1.09861 0.40547 36 2.34167 2.35235 2.84621 0.28685 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.04665 3.78144 3.78144 1.46634 0.26236 2.37668 0.09746 37 1.87265 0.88899 2.41868 1.06081 38 c - - - 1.38629 1.38629 1.38629 1.38629 0.04665 3.78144 3.78144 1.46634 0.26236 2.37668 0.09746 38 1.63626 1.02792 1.43249 1.56623 39 c - - - 1.38629 1.38629 1.38629 1.38629 0.04665 3.78144 3.78144 1.46634 0.26236 0.20545 1.68353 39 0.71208 1.59761 1.73913 2.03010 40 a - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 40 0.94139 2.70575 0.76963 2.52686 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 41 1.37890 2.49789 0.56185 2.34621 42 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 42 2.69286 0.60476 2.46827 1.19940 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 43 3.22174 0.23313 3.00469 2.13276 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 44 2.60289 3.26930 0.16556 3.20669 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 45 3.22219 0.23308 3.00491 2.13284 46 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 46 3.22226 0.23308 3.00494 2.13285 47 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 47 2.59933 0.43017 2.39499 1.69226 48 C - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 48 0.52421 2.51896 1.55650 2.14932 49 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 49 2.03894 1.44990 2.56712 0.58253 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 50 0.98164 2.03208 2.17790 0.96506 51 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 51 1.78102 1.72510 0.68588 1.89891 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.20967 1.77323 3.94446 0.21428 1.64568 1.09861 0.40547 52 2.64105 2.59973 3.15970 0.20828 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 53 1.97386 1.07313 2.52184 0.82363 55 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 54 1.97887 0.97021 2.53352 0.90784 56 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 55 0.14948 3.27243 2.99326 2.97971 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 56 2.73434 3.61685 0.14258 3.19228 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 57 1.96135 2.56369 0.78090 1.12603 59 g - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 58 2.40845 3.17113 0.20157 2.98297 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 59 2.40817 3.17074 0.20165 2.98251 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 60 3.39966 0.19647 3.10256 2.30202 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 61 2.40670 3.16872 0.20206 2.98010 63 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 62 1.93717 2.62844 0.35977 2.45503 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 63 2.56722 1.03321 2.30165 0.76079 65 u - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 64 2.72142 1.71695 2.49727 0.39705 66 U - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 65 2.23985 1.96239 1.92389 0.49928 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.01994 3.92491 * 1.46634 0.26236 0.00000 * //