INFERNAL1/a [1.1.4 | Dec 2020] NAME RAGATH-5 ACC RF02685 DESC RAGATH-5 RNA STATES 163 NODES 47 CLEN 53 W 83 ALPH RNA RF no CONS yes MAP yes DATE Mon Dec 12 16:22:48 2016 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 39 EFFN 7.107788 CKSUM 578019699 NULL 0.000 0.000 0.000 0.000 GA 50.00 TC 51.50 NC 40.10 EFP7GF -14.7962 0.71923 ECMLC 0.51434 -11.07969 1.73350 1600000 873597 0.001374 ECMGC 0.35480 -23.17460 -5.89075 1600000 184196 0.002172 ECMLI 0.49202 -9.69159 2.85271 1600000 574970 0.002087 ECMGI 0.38142 -18.14355 -3.40402 1600000 110577 0.003617 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 119 -8.253 -8.460 -0.021 -6.874 IL 1 1 2 1 4 1 19 85 122 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 85 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - c - - - ML 3 2 3 5 3 1 20 83 119 -9.206 -0.009 -7.860 -0.146 0.463 -0.130 -0.315 D 4 2 3 5 3 0 13 81 117 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 18 84 120 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - C - - - ML 6 5 3 8 3 1 19 82 118 -9.206 -0.009 -7.860 -3.344 1.850 -2.849 -2.656 D 7 5 3 8 3 0 12 80 116 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 83 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 18 81 117 -9.206 -0.009 -7.860 -3.766 -5.234 1.947 -4.503 D 10 8 3 11 3 0 11 79 115 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 82 118 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 1 18 80 116 -9.206 -0.009 -7.860 -2.792 -2.944 1.861 -3.409 D 13 11 3 14 3 0 11 78 114 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 16 81 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 17 79 115 -9.206 -0.009 -7.860 1.948 -4.683 -4.143 -4.401 D 16 14 3 17 3 0 10 77 113 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 15 80 116 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 16 78 114 -9.206 -0.009 -7.860 -0.822 0.328 -1.565 0.881 D 19 17 3 20 3 0 9 76 112 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 14 79 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 15 77 113 -9.206 -0.009 -7.860 1.540 -3.045 -0.291 -2.697 D 22 20 3 23 3 0 9 75 111 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 13 78 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 24 23 3 26 3 1 15 76 112 -9.206 -0.009 -7.860 -3.566 1.848 -4.321 -1.906 D 25 23 3 26 3 0 8 74 110 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 13 77 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - C - - - ML 27 26 3 29 3 1 14 75 111 -9.206 -0.009 -7.860 -2.076 1.169 -3.033 0.476 D 28 26 3 29 3 0 7 73 109 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 12 76 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 13 74 110 -9.206 -0.009 -7.860 -1.994 0.829 -2.907 0.879 D 31 29 3 32 3 0 7 72 108 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 11 75 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 12 73 109 -9.206 -0.009 -7.860 -2.449 -0.745 -3.215 1.638 D 34 32 3 35 3 0 6 71 108 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 10 74 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - G - - - ML 36 35 3 38 3 1 11 72 108 -9.541 -0.008 -7.859 0.114 -1.329 1.132 -1.608 D 37 35 3 38 3 0 5 70 107 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 9 72 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 59 - c - - MR 39 38 3 41 3 1 11 71 107 -9.541 -0.008 -7.859 0.047 0.934 -0.978 -0.865 D 40 38 3 41 3 0 4 69 105 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 8 71 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 58 - C - - MR 42 41 3 44 3 1 10 70 106 -9.541 -0.008 -7.859 -1.396 1.633 -2.370 -1.623 D 43 41 3 44 3 0 3 68 104 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 8 70 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 57 - C - - MR 45 44 3 47 3 1 9 69 105 -9.541 -0.008 -7.859 -1.749 1.673 -2.210 -1.748 D 46 44 3 47 3 0 3 67 103 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 7 69 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 56 - C - - MR 48 47 3 50 3 1 9 68 104 -9.541 -0.008 -7.859 -1.286 1.349 -1.280 -0.663 D 49 47 3 50 3 0 3 66 102 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 6 68 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 55 - a - - MR 51 50 3 53 3 1 8 67 103 -9.541 -0.008 -7.859 0.366 -0.157 -0.132 -0.150 D 52 50 3 53 3 0 3 65 101 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 6 67 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 54 - C - - MR 54 53 3 56 3 1 8 66 102 -9.541 -0.008 -7.859 -0.686 1.051 -2.309 0.144 D 55 53 3 56 3 0 2 64 100 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 5 66 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 53 - C - - MR 57 56 3 59 3 1 7 65 101 -9.541 -0.008 -7.859 -0.868 1.016 -1.127 -0.040 D 58 56 3 59 3 0 2 63 99 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 5 65 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 52 - A - - MR 60 59 3 62 3 1 6 64 100 -9.541 -0.008 -7.859 1.948 -4.683 -4.143 -4.401 D 61 59 3 62 3 0 1 62 98 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 4 64 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 51 - C - - MR 63 62 3 65 3 1 5 63 99 -9.541 -0.008 -7.859 -2.338 1.835 -4.009 -2.546 D 64 62 3 65 3 0 1 61 98 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 4 63 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 50 - C - - MR 66 65 3 68 3 1 4 62 98 -9.541 -0.008 -7.859 -3.642 1.860 -4.378 -2.041 D 67 65 3 68 3 0 0 60 97 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 4 62 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 49 - C - - MR 69 68 3 71 5 1 3 61 97 -8.225 -0.018 -8.041 -8.253 -9.145 -3.041 1.785 -2.062 -2.370 D 70 68 3 71 5 0 0 59 96 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 2 61 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 13 48 G C - - MP 72 71 3 76 4 2 2 60 96 -8.253 -8.460 -0.470 -1.878 -4.029 -2.845 -3.926 2.014 -4.738 -4.579 0.288 -4.491 -1.433 3.004 -4.556 -0.513 -0.372 -3.848 -2.063 -2.902 ML 73 71 3 76 4 1 1 59 96 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 4 1 1 59 96 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 3 76 4 0 0 58 94 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 2 60 97 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 2 60 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 14 - C - - - ML 78 77 6 80 3 1 2 58 95 -9.130 -0.011 -7.447 -1.512 1.617 -2.911 -1.155 D 79 77 6 80 3 0 0 57 94 -7.759 -0.137 -3.542 IL 80 80 3 80 3 1 1 58 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 47 - g - - MR 81 80 3 83 5 1 1 57 94 -8.225 -0.018 -8.041 -8.253 -9.145 0.528 -2.264 0.968 -1.343 D 82 80 3 83 5 0 0 55 92 -5.352 -0.707 -2.978 -4.409 -2.404 IR 83 83 3 83 5 1 1 57 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 15 46 c g - - MP 84 83 3 88 6 2 2 56 93 -9.750 -9.689 -0.013 -8.466 -8.746 -9.141 -1.165 1.425 -2.298 1.289 -1.148 -3.129 1.793 -2.592 -2.348 0.855 -2.905 -0.781 0.996 -2.433 -0.367 -1.517 ML 85 83 3 88 6 1 1 54 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 3 88 6 1 1 54 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 3 88 6 0 0 51 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 55 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 55 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 45 G C - - MP 90 89 6 94 6 2 2 54 91 -9.750 -9.689 -0.013 -8.466 -8.746 -9.141 -6.966 -4.220 -7.745 -1.428 -8.215 -5.536 -3.027 -7.834 -5.572 3.905 -5.809 -2.061 -3.389 -5.845 -5.264 -6.595 ML 91 89 6 94 6 1 1 52 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 52 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 49 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 53 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 53 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 17 44 G C - - MP 96 95 6 100 6 2 2 52 89 -9.750 -9.689 -0.013 -8.466 -8.746 -9.141 -6.433 -0.998 -6.816 -1.070 -7.707 -5.453 -2.572 -7.189 -5.439 3.834 -5.685 -1.843 -2.865 -5.571 -4.729 -5.712 ML 97 95 6 100 6 1 1 51 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 50 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 48 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 51 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 51 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 18 43 G C - - MP 102 101 6 106 4 2 2 50 87 -8.253 -8.460 -0.021 -6.874 -6.966 -4.220 -7.745 -1.428 -8.215 -5.536 -3.027 -7.834 -5.572 3.905 -5.809 -2.061 -3.389 -5.845 -5.264 -6.595 ML 103 101 6 106 4 1 1 49 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 4 1 1 49 85 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 105 101 6 106 4 0 0 48 84 -4.568 -4.250 -2.265 -0.520 IL 106 106 5 106 4 1 1 50 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 107 107 6 107 3 1 1 50 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - C - - - ML 108 107 6 110 3 1 1 48 85 -3.497 -0.141 -7.859 -2.471 1.528 -3.432 -0.247 D 109 107 6 110 3 0 0 46 83 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 48 85 -2.646 -0.310 -4.885 0.000 0.000 0.000 0.000 [ MATR 32 ] - 42 - a - - MR 111 110 3 113 5 1 1 47 83 -8.225 -0.018 -8.041 -8.253 -9.145 0.886 -2.917 0.876 -2.447 D 112 110 3 113 5 0 0 45 82 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 1 47 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 21 41 c g - - MP 114 113 3 118 6 2 2 46 83 -9.750 -9.689 -0.013 -8.466 -8.746 -9.141 -0.590 -3.677 -3.737 -0.034 -1.917 -4.510 2.914 -3.604 -3.723 0.085 -4.230 -1.736 1.985 -3.923 -0.732 -2.670 ML 115 113 3 118 6 1 1 44 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 3 118 6 1 1 44 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 0 41 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 45 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 45 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 22 40 G C - - MP 120 119 6 124 6 2 2 44 81 -9.750 -9.689 -0.013 -8.466 -8.746 -9.141 -6.486 -4.076 -6.898 -1.117 -7.665 -5.474 -2.578 -7.212 -1.930 3.857 -5.701 -1.875 -2.899 -5.616 -4.736 -5.784 ML 121 119 6 124 6 1 1 42 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 42 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 40 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 43 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 43 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 23 39 C G - - MP 126 125 6 130 4 2 2 42 79 -8.253 -8.460 -0.021 -6.874 -7.202 -7.330 -6.373 -3.542 -4.751 -6.439 3.926 -5.904 -6.686 -3.502 -6.468 -5.487 -1.689 -7.109 -2.709 -5.489 ML 127 125 6 130 4 1 1 41 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 1 40 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 0 39 76 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 1 42 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 1 42 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 24 - A - - - ML 132 131 6 134 3 1 1 40 76 -9.206 -0.009 -7.860 1.948 -4.683 -4.143 -4.401 D 133 131 6 134 3 0 0 38 74 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 41 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 25 - C - - - ML 135 134 3 137 3 1 1 39 75 -9.206 -0.009 -7.860 -4.324 1.935 -4.957 -3.395 D 136 134 3 137 3 0 0 37 73 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 40 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 26 - C - - - ML 138 137 3 140 3 1 1 38 74 -9.206 -0.009 -7.860 -4.324 1.935 -4.957 -3.395 D 139 137 3 140 3 0 0 36 72 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 39 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 27 - G - - - ML 141 140 3 143 3 1 1 37 74 -9.206 -0.009 -7.860 -1.812 -2.418 1.756 -2.735 D 142 140 3 143 3 0 0 35 71 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 38 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 28 - c - - - ML 144 143 3 146 3 1 1 36 73 -9.206 -0.379 -2.124 -0.229 0.229 -0.318 0.229 D 145 143 3 146 3 0 0 33 70 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 37 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 29 - a - - - ML 147 146 3 149 3 1 1 35 72 -8.838 -0.011 -7.492 0.539 -1.172 -0.614 0.536 D 148 146 3 149 3 0 0 29 65 -8.741 -4.254 -0.081 IL 149 149 3 149 3 1 1 36 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 30 - c - - - ML 150 149 3 152 3 1 1 34 71 -1.597 -0.591 -7.492 -0.661 0.777 -0.515 -0.068 D 151 149 3 152 3 0 0 23 60 -8.741 -0.178 -3.132 IL 152 152 3 152 3 1 1 36 72 -0.725 -1.381 -6.503 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - A - - - ML 153 152 3 155 3 1 1 14 32 -9.206 -0.009 -7.860 1.948 -4.683 -4.143 -4.401 D 154 152 3 155 3 0 0 15 33 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - A - - - ML 156 155 3 158 3 1 1 12 31 -9.206 -0.009 -7.860 1.850 -3.366 -3.299 -2.348 D 157 155 3 158 3 0 0 13 32 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - A - - - ML 159 158 3 161 2 1 1 1 1 * 0.000 1.948 -4.683 -4.143 -4.401 D 160 158 3 161 2 0 0 0 0 * 0.000 IL 161 161 3 161 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 162 161 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME RAGATH-5 ACC RF02685 DESC RAGATH-5 RNA LENG 53 MAXL 122 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Dec 12 16:22:48 2016 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 39 EFFN 9.269165 CKSUM 578019699 STATS LOCAL MSV -7.0881 0.71923 STATS LOCAL VITERBI -8.1721 0.71923 STATS LOCAL FORWARD -3.8113 0.71923 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.49244 0.91246 1.40299 2.05743 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 0.00000 * 1 1.52293 1.01849 1.45781 1.67109 1 c - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 2 4.00936 0.08404 3.39369 3.54489 2 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 3 4.27408 5.32854 0.02753 4.78226 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 4 3.59326 3.48508 0.07916 4.02037 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 5 0.02618 4.96407 4.57769 4.75877 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 6 2.05123 1.12747 2.56325 0.75392 6 u - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 7 0.29656 3.81244 1.57142 3.61991 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 8 4.14782 0.08863 4.62879 2.82603 8 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 9 3.08777 0.54135 3.77723 1.05112 9 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 10 3.04359 0.77754 3.70102 0.75906 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 11 3.36117 1.91937 3.89024 0.22544 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 12 1.31865 2.35622 0.55755 2.73156 12 G - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 13 1.27569 2.56989 0.54531 2.74025 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.33178 4.84098 1.29296 1.46634 0.26236 1.09861 0.40547 14 2.56525 0.22102 3.66019 2.34683 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.02178 4.53097 4.53097 1.46634 0.26236 0.05597 2.91084 15 0.93309 1.32274 1.87185 1.67976 15 a - - < 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 16 3.74781 4.79384 0.04111 4.77625 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 17 2.83735 4.61907 0.08227 4.55334 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 18 3.74686 4.79219 0.04117 4.77396 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 19 3.36637 0.29773 4.04388 1.58253 19 C - - - 1.38629 1.38629 1.38629 1.38629 0.11591 2.28722 4.84098 0.14891 1.97792 1.09861 0.40547 20 2.28863 0.63124 2.63818 1.22019 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 21 3.62375 4.64247 0.04753 4.59502 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 22 5.06655 0.03576 5.03336 3.80264 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 23 0.02618 4.96407 4.57769 4.75877 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 24 4.67540 0.03384 5.06591 4.03722 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 25 4.67540 0.03384 5.06591 4.03722 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 26 2.77019 3.10494 0.14895 3.47654 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 27 1.58783 1.19582 1.59468 1.23718 28 c - - _ 1.38629 1.38629 1.38629 1.38629 0.28844 4.84098 1.41605 1.46634 0.26236 1.09861 0.40547 28 0.99335 2.30434 1.83030 0.99567 29 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02086 4.57340 4.57340 1.46634 0.26236 3.48800 0.03104 29 1.95209 0.78886 1.74060 1.47733 30 c - - _ 1.38629 1.38629 1.38629 1.38629 0.45806 1.02955 4.57340 1.09350 0.40803 0.06307 2.79486 30 0.02618 4.96407 4.57769 4.75877 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 31 0.08711 3.95558 3.93774 3.10591 37 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 32 0.02618 4.96407 4.57769 4.75877 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 33 4.06771 5.19188 0.03041 4.92357 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 34 3.66288 0.07597 4.53274 3.30376 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 35 1.13241 2.81753 0.60498 2.63239 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 36 0.74810 3.74004 0.75230 3.45150 42 a - - - 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 37 4.85122 0.05092 4.69340 3.42124 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 38 4.68063 0.05994 4.50446 3.27429 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 39 4.88600 0.05024 4.71305 3.42734 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 40 1.69537 1.13662 1.26193 1.54900 46 c - - > 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 41 1.00888 3.18103 0.67565 2.46507 47 G - - - 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 42 2.63021 0.64147 2.42820 1.16084 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 43 3.84207 0.12312 2.81376 3.36934 49 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 44 4.19882 0.08106 4.66399 2.92964 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 45 3.09673 0.09305 4.41552 3.45568 51 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 46 0.02618 4.96407 4.57769 4.75877 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 47 2.09332 0.63272 2.20034 1.44897 53 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 48 1.92249 0.61306 3.20443 1.30385 54 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 49 1.12688 1.47716 1.46317 1.53170 55 a - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 50 2.41520 0.40623 2.29562 1.93935 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 51 2.73280 0.18933 2.98327 2.86780 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 52 2.44819 0.21428 3.13371 2.76671 58 C - - : 1.38629 1.38629 1.38629 1.38629 0.01592 4.84098 4.84098 1.46634 0.26236 1.09861 0.40547 53 1.36560 0.68208 2.10053 2.14718 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.00799 4.83305 * 1.46634 0.26236 0.00000 * //