INFERNAL1/a [1.1.4 | Dec 2020] NAME gut-2 ACC RF02990 DESC gut-2 RNA STATES 153 NODES 42 CLEN 48 W 60 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 20:23:31 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 73 EFFN 73.000000 CKSUM 62148561 NULL 0.000 0.000 0.000 0.000 GA 39.80 TC 39.80 NC 36.10 EFP7GF -15.7898 0.72989 ECMLC 0.68845 -7.39892 1.11373 1600000 421088 0.002850 ECMGC 0.40770 -25.68506 -10.27422 1600000 214167 0.001868 ECMLI 0.59744 -8.05360 1.38182 1600000 336767 0.003563 ECMGI 0.40713 -23.83479 -8.89580 1600000 175189 0.002283 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 60 79 -11.353 -11.560 -0.002 -9.974 IL 1 1 2 1 4 2 20 66 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 20 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 5 21 60 79 -12.267 -0.001 -10.921 0.816 -0.444 -0.392 -0.429 D 4 2 3 5 3 0 16 60 79 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 19 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 4 20 59 78 -12.267 -0.001 -10.921 1.259 -5.562 0.200 -1.196 D 7 5 3 8 3 0 16 59 78 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 19 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 4 19 58 76 -12.565 -0.001 -10.883 -7.837 1.994 -8.324 -6.827 D 10 8 3 11 3 0 16 57 75 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 18 59 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 50 - c - - MR 12 11 3 14 3 3 18 57 75 -12.565 -0.001 -10.883 -0.825 0.382 0.239 -0.070 D 13 11 3 14 3 0 14 55 74 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 17 58 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 49 - g - - MR 15 14 3 17 3 3 17 56 74 -12.565 -0.001 -10.883 0.409 -2.515 0.850 -0.524 D 16 14 3 17 3 0 14 54 73 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 57 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 48 - a - - MR 18 17 3 20 3 3 16 55 73 -12.565 -0.001 -10.883 0.884 -1.021 -0.730 0.083 D 19 17 3 20 3 0 13 53 72 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 16 56 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 47 - a - - MR 21 20 3 23 3 2 15 54 72 -12.565 -0.001 -10.883 0.504 -0.011 -0.567 -0.129 D 22 20 3 23 3 0 13 53 71 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 15 55 73 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 46 - g - - MR 24 23 3 26 3 2 14 53 71 -12.565 -0.001 -10.883 0.542 -1.356 0.600 -0.651 D 25 23 3 26 3 0 12 52 70 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 14 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 45 - A - - MR 27 26 3 29 2 1 13 52 70 -12.911 -0.000 1.179 -7.068 0.782 -6.957 D 28 26 3 29 2 0 12 51 70 -4.432 -0.068 IR 29 29 3 29 2 1 13 54 72 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 10 ] - - - - - - B 30 29 3 31 99 0 12 51 69 [ BEGL 11 ] - - - - - - S 31 30 1 32 4 0 0 33 52 -0.004 -10.318 -9.726 -10.366 [ MATP 12 ] 4 27 C G - - MP 32 31 1 36 6 2 2 33 52 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -9.138 -9.376 -1.613 -5.591 -6.843 -8.639 3.533 -7.751 -8.574 -5.554 -8.705 1.674 -1.344 -8.989 -1.187 -7.374 ML 33 31 1 36 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 1 36 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 1 36 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 5 26 g c - - MP 38 37 6 42 6 2 2 31 50 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -6.285 -4.971 -6.115 1.694 -6.989 -6.723 0.639 -6.716 -6.516 2.954 -6.782 -0.450 1.010 -5.985 -0.831 -5.059 ML 39 37 6 42 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 6 25 u a - - MP 44 43 6 48 6 2 2 29 48 -3.346 -4.778 -0.290 -10.945 -4.433 -11.619 -6.554 -6.257 -6.556 -0.250 -5.440 -7.397 1.449 -6.089 -6.420 1.429 -6.932 -1.069 2.726 -6.737 1.328 -5.145 ML 45 43 6 48 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 6 48 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 29 47 -5.810 -0.139 -3.990 -7.728 -8.504 -8.164 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 28 46 -5.402 -0.054 -8.913 -7.081 -8.187 0.000 0.000 0.000 0.000 [ MATP 15 ] 8 23 c g - - MP 50 49 6 54 6 2 2 27 45 -12.161 -12.100 -0.017 -10.877 -6.557 -11.552 -6.463 -6.168 -6.468 0.641 -5.365 -7.309 2.701 -6.011 -6.335 1.519 -6.848 -0.683 1.622 -6.646 0.293 -5.063 ML 51 49 6 54 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 6 1 1 26 44 -9.476 -8.205 -0.185 -8.183 -3.317 -6.397 -3.057 1.847 -3.859 -2.229 D 53 49 6 54 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 54 54 5 54 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 55 55 6 55 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 9 22 c g - - MP 56 55 6 60 6 2 2 25 43 -12.215 -12.154 -0.002 -10.930 -11.210 -11.605 -6.396 -5.517 -6.314 1.654 -5.928 -7.030 2.212 -6.317 -6.435 2.007 -6.838 1.243 0.479 -6.325 -1.758 -5.085 ML 57 55 6 60 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 6 60 6 1 1 24 42 -7.971 -6.700 -0.604 -6.678 -1.812 -4.892 1.371 -1.373 -1.100 -0.836 D 59 55 6 60 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 21 a u - - MP 62 61 6 66 6 2 2 23 41 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -6.379 -5.538 -6.309 2.404 -5.919 -7.034 0.863 -6.312 -6.421 1.517 -6.832 1.288 1.659 -6.329 -1.821 -5.090 ML 63 61 6 66 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 20 c g - - MP 68 67 6 72 6 2 2 21 39 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -6.555 -6.126 -6.543 1.369 -5.546 -7.369 2.446 -6.155 -6.448 1.562 -6.944 0.164 1.862 -6.697 -3.003 -5.163 ML 69 67 6 72 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 22 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 19 c g - - MP 74 73 6 78 4 2 2 19 37 -11.353 -11.560 -0.002 -9.974 -6.516 -6.235 -6.523 0.934 -5.437 -7.361 2.470 -6.081 -6.396 1.528 -6.909 -3.838 1.308 -6.703 -0.960 1.319 ML 75 73 6 78 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 77 73 6 78 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 78 78 5 78 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 79 79 6 79 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 13 - A - - - ML 80 79 6 82 3 1 1 16 34 -12.267 -0.001 -10.921 1.795 -6.905 -0.961 -6.795 D 81 79 6 82 3 0 0 18 36 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 14 - A - - - ML 83 82 3 85 3 1 1 14 33 -12.267 -0.001 -10.921 1.868 -2.650 -5.654 -2.555 D 84 82 3 85 3 0 0 17 35 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 15 - U - - - ML 86 85 3 88 3 1 1 13 32 -12.267 -0.001 -10.921 -0.379 -4.455 -0.924 1.411 D 87 85 3 88 3 0 0 16 34 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - U - - - ML 89 88 3 91 3 1 1 12 30 -12.267 -0.001 -10.921 -3.343 -0.437 -2.211 1.559 D 90 88 3 91 3 0 0 15 33 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - G - - - ML 92 91 3 94 3 1 1 10 28 -12.267 -0.001 -10.921 -6.873 -8.643 1.994 -7.635 D 93 91 3 94 3 0 0 13 32 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - G - - - ML 95 94 3 97 2 1 1 1 1 * 0.000 -6.873 -8.643 1.994 -7.635 D 96 94 3 97 2 0 0 0 0 * 0.000 IL 97 97 3 97 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 26 ] - - - - - - E 98 97 3 -1 0 0 0 0 0 [ BEGR 27 ] - - - - - - S 99 30 1 100 3 0 1 28 46 -12.267 -0.001 -10.921 IL 100 100 2 100 3 1 1 34 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - A - - - ML 101 100 2 103 3 1 2 28 46 -12.267 -0.001 -10.921 1.949 -7.541 -2.975 -7.221 D 102 100 2 103 3 0 0 29 47 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 33 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - A - - - ML 104 103 3 106 3 1 2 27 45 -12.267 -0.001 -10.921 1.969 -7.784 -3.725 -7.387 D 105 103 3 106 3 0 0 27 46 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 32 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 107 106 3 109 5 1 1 26 44 -11.211 -0.027 -11.026 -5.870 -12.130 -3.345 -8.485 1.961 -7.528 D 108 106 3 109 5 0 0 24 43 -4.959 -0.803 -4.221 -2.596 -2.508 IL 109 109 3 109 5 1 1 26 45 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 31 44 G C - - MP 110 109 3 114 6 2 2 25 43 -12.206 -12.145 -0.002 -10.922 -11.202 -11.597 -8.858 -6.722 -9.294 1.733 -10.804 -8.556 -5.748 -9.370 -7.992 3.609 -8.374 -1.300 -5.925 -8.651 -7.870 -7.970 ML 111 109 3 114 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 112 109 3 114 6 1 1 24 42 -8.352 -7.081 -0.439 -7.059 -2.193 -5.273 -0.985 -2.100 1.538 -1.484 D 113 109 3 114 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 114 114 5 114 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 115 115 6 115 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 32 43 g c - - MP 116 115 6 120 6 2 2 23 41 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -6.643 -2.081 -6.497 2.680 -7.688 -7.191 -0.498 -7.121 -6.835 2.708 -7.134 0.899 -3.022 -6.426 -4.770 -5.428 ML 117 115 6 120 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 118 115 6 120 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 119 115 6 120 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 120 120 5 120 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 121 121 6 121 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 33 42 C G - - MP 122 121 6 126 6 2 2 21 39 -12.229 -12.168 -0.002 -10.945 -11.224 -11.619 -11.784 -12.030 -8.310 -9.140 -6.553 -7.832 3.996 -11.160 -11.966 -8.933 -7.859 -10.986 -6.979 -12.059 -7.978 -10.725 ML 123 121 6 126 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 6 126 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 6 126 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 34 41 C G - - MP 128 127 6 132 4 2 2 19 37 -11.353 -11.560 -0.038 -5.308 -9.168 -9.440 -8.493 -5.667 -6.847 -8.642 3.233 -7.761 -8.594 -5.633 -8.718 -7.821 2.597 -9.006 -1.094 -7.395 ML 129 127 6 132 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 131 127 6 132 4 0 0 21 39 -4.568 -4.250 -2.265 -0.520 IL 132 132 5 132 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 133 133 6 133 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 35 - A - - - ML 134 133 6 136 3 1 1 16 34 -12.232 -0.074 -4.337 1.379 -7.021 0.468 -6.927 D 135 133 6 136 3 0 0 16 34 -8.610 -0.197 -3.002 IL 136 136 3 136 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 36 - A - - - ML 137 136 3 139 3 1 1 14 33 -12.197 -0.001 -10.851 1.861 -2.578 -5.569 -2.484 D 138 136 3 139 3 0 0 15 33 -9.455 -0.106 -3.847 IL 139 139 3 139 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 37 - U - - - ML 140 139 3 142 3 1 1 13 32 -12.267 -0.001 -10.921 -0.121 -4.236 -0.728 1.277 D 141 139 3 142 3 0 0 16 34 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 38 - u - - - ML 143 142 3 145 3 1 1 12 30 -12.267 -0.001 -10.921 0.016 0.339 -4.904 0.758 D 144 142 3 145 3 0 0 15 33 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - G - - - ML 146 145 3 148 3 1 1 10 28 -12.267 -0.001 -10.921 -6.873 -8.643 1.994 -7.635 D 147 145 3 148 3 0 0 13 32 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 149 148 3 151 2 1 1 1 1 * 0.000 -6.873 -8.643 1.994 -7.635 D 150 148 3 151 2 0 0 0 0 * 0.000 IL 151 151 3 151 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 152 151 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME gut-2 ACC RF02990 DESC gut-2 RNA LENG 48 MAXL 102 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 20:23:31 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 73 EFFN 61.794250 CKSUM 62148561 STATS LOCAL MSV -7.9883 0.72989 STATS LOCAL VITERBI -8.2742 0.72989 STATS LOCAL FORWARD -3.7052 0.72989 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31446 1.60087 1.07820 1.66362 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 0.00000 * 1 0.82628 1.69362 1.65850 1.67105 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 2 0.51529 5.01270 1.25035 2.21078 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 3 6.62273 0.00493 6.95276 5.94083 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 4 3.79521 0.32475 1.60628 2.91536 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 5 1.57989 2.30549 0.63313 1.81177 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 6 2.86633 1.73205 1.61316 0.56755 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.17016 2.24290 2.98930 0.02487 3.70653 1.09861 0.40547 7 2.29009 0.89806 1.51927 1.30007 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.01380 6.57250 4.39742 1.46634 0.26236 0.05150 2.99179 8 1.61259 1.23771 0.91785 2.19636 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.00269 6.61231 6.61231 1.46634 0.26236 0.20473 1.68666 9 1.10852 2.13235 1.09815 1.52368 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 10 1.81004 1.07195 1.36612 1.43164 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 11 2.09931 1.05408 1.68097 1.07075 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 12 0.14378 5.97985 2.05055 5.90438 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 13 0.09362 3.20846 5.14825 3.14329 14 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 14 1.64698 4.28295 2.02721 0.41269 15 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 15 3.65047 1.69260 2.91598 0.30676 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 16 5.99837 7.22313 0.00469 6.52594 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 17 5.99837 7.22313 0.00469 6.52594 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 18 1.83172 1.70533 0.96894 1.27774 19 g - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 19 1.46708 1.67903 1.05116 1.45537 20 g - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 20 1.60943 1.68777 1.99396 0.73624 21 u - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 21 2.30410 1.37401 1.18603 1.07403 22 u - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 22 1.66547 1.54238 0.77584 1.98990 23 g - - > 1.38629 1.38629 1.38629 1.38629 0.15803 1.93211 6.62274 0.01826 4.01206 1.09861 0.40547 23 0.88513 1.77236 1.10858 2.43748 25 a - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 24 2.05915 0.71925 2.00687 1.38265 26 c - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 25 3.61416 6.05544 0.26183 1.60407 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 26 0.03600 6.41442 3.45131 6.20632 28 A - - - 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 27 0.02228 6.58912 3.96996 6.33009 29 A - - - 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 28 3.70360 7.08851 0.02745 6.43586 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.01958 6.62274 4.01398 1.46634 0.26236 1.09861 0.40547 29 1.57318 6.24398 0.23778 6.07564 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.00271 6.60586 6.60586 1.46634 0.26236 0.13737 2.05298 30 0.88772 3.05851 0.64163 4.19877 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 31 7.11209 0.00299 7.14931 6.58076 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 32 6.04456 0.53173 5.98465 0.89765 34 C - - < 1.38629 1.38629 1.38629 1.38629 0.02708 6.62274 3.67355 1.46634 0.26236 1.09861 0.40547 33 0.43061 6.07305 1.06386 6.00675 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05284 6.59839 2.99361 1.46634 0.26236 0.09963 2.35567 34 0.09868 3.15881 5.08979 3.09373 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00280 6.57400 6.57400 1.46634 0.26236 0.05296 2.96459 35 1.46776 4.12942 1.89049 0.50672 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 36 1.37720 1.15213 4.57563 0.86404 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 37 5.99837 7.22313 0.00469 6.52594 39 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 38 5.99837 7.22313 0.00469 6.52594 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 39 0.97201 6.02720 0.48446 5.73391 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 40 6.02769 6.81154 0.00467 6.77472 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 41 4.37589 0.85568 2.98938 0.66921 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 42 5.46286 0.28554 4.27367 1.46871 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 43 0.56802 6.10529 0.84699 6.02450 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 44 1.01380 2.31107 0.97712 1.82255 46 g - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 45 1.03991 1.39810 1.77716 1.46824 47 a - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 46 0.77996 2.08385 1.88783 1.32529 48 a - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 47 1.10609 3.08416 0.80248 1.74203 49 g - - : 1.38629 1.38629 1.38629 1.38629 0.00266 6.62274 6.62274 1.46634 0.26236 1.09861 0.40547 48 1.93831 1.12837 1.22761 1.42920 50 c - - : 1.38629 1.38629 1.38629 1.38629 0.00133 6.62141 * 1.46634 0.26236 0.00000 * //