INFERNAL1/a [1.1.4 | Dec 2020] NAME RAGATH-30 ACC RF03055 DESC RAGATH-30 RNA STATES 186 NODES 54 CLEN 59 W 83 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 22:52:22 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 33 EFFN 5.184448 CKSUM 2033658646 NULL 0.000 0.000 0.000 0.000 GA 59.50 TC 59.50 NC 37.90 EFP7GF -11.9432 0.71908 ECMLC 0.69596 -7.45093 1.83905 1600000 771077 0.001556 ECMGC 0.36619 -19.14892 -2.67307 1600000 166841 0.002397 ECMLI 0.54913 -8.81880 2.50110 1600000 600873 0.001997 ECMGI 0.36837 -15.33198 0.21520 1600000 122827 0.003257 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 83 113 -7.892 -8.099 -0.064 -4.803 IL 1 1 2 1 4 1 22 86 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 22 85 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 22 83 113 -8.823 -0.011 -7.477 -1.932 -3.815 1.833 -3.254 D 4 2 3 5 3 0 17 82 111 -6.671 -0.968 -1.062 IL 5 5 3 5 3 1 21 84 114 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 22 82 112 -8.858 -0.011 -7.512 -1.424 -1.830 -2.092 1.638 D 7 5 3 8 3 0 15 80 110 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 20 83 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 21 81 111 -8.858 -0.011 -7.512 1.062 -0.991 -0.458 -0.553 D 10 8 3 11 3 0 15 79 109 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 19 82 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - A - - - ML 12 11 3 14 3 1 20 80 110 -8.858 -0.011 -7.512 1.833 -3.321 -2.205 -3.044 D 13 11 3 14 3 0 14 78 108 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 18 81 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 20 79 109 -8.858 -0.011 -7.512 1.841 -3.370 -2.297 -3.095 D 16 14 3 17 3 0 13 77 107 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 18 80 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - A - - - ML 18 17 3 20 3 1 19 78 108 -8.858 -0.011 -7.512 1.813 -2.985 -2.865 -2.159 D 19 17 3 20 3 0 12 76 106 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 17 79 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 18 77 107 -8.858 -0.011 -7.512 1.921 -4.103 -3.590 -3.807 D 22 20 3 23 3 0 12 75 105 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 16 78 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - U - - - ML 24 23 3 26 3 1 18 76 106 -8.858 -0.011 -7.512 -3.149 -2.883 -3.931 1.882 D 25 23 3 26 3 0 11 74 104 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 16 77 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 17 75 105 -8.858 -0.011 -7.512 1.921 -4.103 -3.590 -3.807 D 28 26 3 29 3 0 10 73 103 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 15 76 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - A - - - ML 30 29 3 32 3 1 16 74 104 -8.858 -0.011 -7.512 1.921 -4.103 -3.590 -3.807 D 31 29 3 32 3 0 9 72 102 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 14 75 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - G - - - ML 33 32 3 35 3 1 16 73 103 -8.858 -0.011 -7.512 -3.261 -4.674 1.924 -4.004 D 34 32 3 35 3 0 9 71 101 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 14 74 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 15 72 102 -8.858 -0.011 -7.512 1.805 -2.359 -2.757 -2.623 D 37 35 3 38 3 0 8 70 100 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 13 73 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 14 71 101 -8.858 -0.011 -7.512 1.554 -2.148 -1.140 -1.382 D 40 38 3 41 3 0 7 69 99 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 12 72 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - u - - - ML 42 41 3 44 3 1 13 70 100 -1.643 -0.569 -7.512 0.350 -0.983 -1.521 0.904 D 43 41 3 44 3 0 7 67 96 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 13 71 100 -1.120 -0.931 -6.034 0.000 0.000 0.000 0.000 [ MATL 15 ] 20 - U - - - ML 45 44 3 47 3 1 13 68 97 -8.858 -0.011 -7.512 -1.183 -1.635 -1.143 1.478 D 46 44 3 47 3 0 6 66 95 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 11 69 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 21 - U - - - ML 48 47 3 50 3 1 12 67 96 -8.858 -0.011 -7.512 -0.509 -1.088 -1.990 1.365 D 49 47 3 50 3 0 5 65 94 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 10 68 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 22 - A - - - ML 51 50 3 53 3 1 11 66 95 -8.858 -0.011 -7.512 1.808 -3.195 -1.961 -2.908 D 52 50 3 53 3 0 5 64 93 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 9 67 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 23 - U - - - ML 54 53 3 56 3 1 11 65 94 -8.858 -0.011 -7.512 -1.801 -1.431 -2.050 1.633 D 55 53 3 56 3 0 4 63 92 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 9 66 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 24 - C - - - ML 57 56 3 59 3 1 10 64 93 -8.858 -0.011 -7.512 -3.755 1.904 -4.480 -2.848 D 58 56 3 59 3 0 4 62 91 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 8 65 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 25 - G - - - ML 60 59 3 62 3 1 9 63 92 -8.858 -0.011 -7.512 -3.261 -4.674 1.924 -4.004 D 61 59 3 62 3 0 3 61 90 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 7 64 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 26 - A - - - ML 63 62 3 65 3 1 8 62 91 -8.858 -0.011 -7.512 1.921 -4.103 -3.590 -3.807 D 64 62 3 65 3 0 3 60 89 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 7 63 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 27 - A - - - ML 66 65 3 68 3 1 7 61 90 -8.858 -0.011 -7.512 1.650 -1.862 -2.275 -1.394 D 67 65 3 68 3 0 3 59 88 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 6 62 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 28 - u - - - ML 69 68 3 71 3 1 6 60 89 -8.858 -0.011 -7.512 0.112 -0.343 -1.490 0.828 D 70 68 3 71 3 0 2 58 87 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 6 61 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 29 - a - - - ML 72 71 3 74 3 1 5 59 88 -8.858 -0.011 -7.512 0.816 -0.815 -1.120 0.276 D 73 71 3 74 3 0 2 57 86 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 60 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 30 - a - - - ML 75 74 3 77 3 1 4 57 87 -8.858 -0.011 -7.512 0.674 -1.316 0.032 -0.029 D 76 74 3 77 3 0 2 56 86 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 4 59 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 31 - A - - - ML 78 77 3 80 3 1 3 56 86 -9.204 -0.010 -7.522 1.232 -2.430 0.270 -1.944 D 79 77 3 80 3 0 1 55 85 -5.620 -0.734 -1.403 IL 80 80 3 80 3 1 3 57 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 67 - A - - MR 81 80 3 83 3 1 2 55 85 -9.204 -0.010 -7.522 1.793 -3.131 -1.832 -2.838 D 82 80 3 83 3 0 0 54 84 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 56 86 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 66 - A - - MR 84 83 3 86 2 1 1 54 84 -9.379 -0.002 1.641 -2.282 -2.323 -1.073 D 85 83 3 86 2 0 0 54 83 -4.432 -0.068 IR 86 86 3 86 2 1 1 55 85 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 29 ] - - - - - - B 87 86 3 88 132 0 0 53 83 [ BEGL 30 ] - - - - - - S 88 87 1 89 4 0 0 37 67 -0.030 -7.386 -6.794 -7.434 [ MATP 31 ] 32 48 c g - - MP 89 88 1 93 6 2 2 37 67 -9.543 -9.483 -0.016 -8.259 -8.539 -8.934 -1.674 -3.541 -3.623 0.169 -2.846 -4.391 2.758 -3.447 -3.599 0.319 -4.101 -1.537 2.170 -3.811 -0.190 -2.519 ML 90 88 1 93 6 1 1 35 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 1 93 6 1 1 35 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 1 93 6 0 0 32 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 36 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 36 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 33 47 u a - - MP 95 94 6 99 6 2 2 35 65 -9.543 -9.483 -0.016 -8.259 -8.539 -8.934 -4.854 -4.819 -4.580 -0.906 -3.249 -5.031 2.733 -4.040 -4.583 -0.740 -4.903 -2.724 2.811 -4.917 -0.890 -3.391 ML 96 94 6 99 6 1 1 33 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 33 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 30 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 34 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 34 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 34 46 u a - - MP 101 100 6 105 6 2 2 33 63 -9.543 -9.483 -0.016 -8.259 -8.539 -8.934 -4.531 -4.477 -4.364 -0.585 -3.161 -4.911 2.493 -3.907 -4.349 -0.413 -4.727 -2.371 2.798 -4.650 0.288 -3.175 ML 102 100 6 105 6 1 1 31 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 31 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 28 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 32 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 32 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 35 45 G C - - MP 107 106 6 111 6 2 2 31 61 -9.543 -9.483 -0.016 -8.259 -8.539 -8.934 -4.460 -3.073 -4.432 2.207 -5.491 -5.131 -0.724 -4.861 -4.428 3.162 -4.821 -0.636 -0.981 -4.457 -2.718 -3.297 ML 108 106 6 111 6 1 1 29 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 29 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 27 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 30 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 30 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 44 c g - - MP 113 112 6 117 4 2 2 29 59 -3.752 -8.099 -0.134 -6.514 -3.807 -3.745 -3.819 0.051 -2.929 -4.557 2.541 -3.564 -3.785 0.217 -4.267 -1.672 2.433 -4.022 0.305 -1.430 ML 114 112 6 117 4 1 1 28 58 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 4 1 1 27 56 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 116 112 6 117 4 0 0 26 56 -4.568 -4.250 -2.265 -0.520 IL 117 117 5 117 4 1 1 31 61 -0.894 -3.838 -1.398 -6.324 0.000 0.000 0.000 0.000 IR 118 118 6 118 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - u - - - ML 119 118 6 121 3 1 1 16 34 -8.858 -0.011 -7.512 0.316 -1.167 -0.345 0.607 D 120 118 6 121 3 0 0 16 34 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - u - - - ML 122 121 3 124 3 1 1 14 33 -8.858 -0.011 -7.512 0.392 -0.706 -0.622 0.511 D 123 121 3 124 3 0 0 15 33 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - A - - - ML 125 124 3 127 3 1 1 12 31 -8.858 -0.011 -7.512 1.476 -1.280 -1.960 -0.865 D 126 124 3 127 3 0 0 13 32 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - a - - - ML 128 127 3 130 2 1 1 1 1 * 0.000 0.966 -2.403 0.666 -1.888 D 129 127 3 130 2 0 0 0 0 * 0.000 IL 130 130 3 130 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 131 130 3 -1 0 0 0 0 0 [ BEGR 41 ] - - - - - - S 132 87 1 133 3 0 0 30 48 -8.858 -0.063 -4.615 IL 133 133 2 133 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 49 - A - - - ML 134 133 2 136 5 1 1 30 48 -7.852 -0.023 -7.667 -7.880 -8.771 1.916 -4.012 -3.504 -3.710 D 135 133 2 136 5 0 0 29 47 -5.383 -0.553 -4.645 -3.020 -2.932 IL 136 136 3 136 5 1 1 30 49 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 50 65 u a - - MP 137 136 3 141 6 2 2 29 47 -9.543 -9.483 -0.016 -8.259 -8.539 -8.934 -2.100 -1.526 -1.043 1.409 -2.285 -3.094 1.098 -2.616 -2.355 1.788 -2.902 0.016 1.793 -2.381 -0.432 -1.123 ML 138 136 3 141 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 51 64 C G - - MP 143 142 6 147 6 2 2 27 45 -9.543 -9.483 -0.016 -8.259 -8.539 -8.934 -6.515 -6.588 -5.835 -2.767 -4.261 -5.989 3.881 -5.292 -6.035 -2.697 -5.995 -4.658 -1.041 -6.451 -2.104 -4.839 ML 144 142 6 147 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 52 63 U A - - MP 149 148 6 153 6 2 2 25 43 -9.543 -9.483 -0.016 -8.259 -8.539 -8.934 -6.028 -6.064 -5.624 -2.243 -4.187 -5.957 0.149 -5.026 -5.648 -2.120 -5.913 -4.097 3.754 -6.008 -0.651 -4.194 ML 150 148 6 153 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 53 62 G C - - MP 155 154 6 159 6 2 2 23 41 -9.543 -9.483 -0.016 -8.259 -8.539 -8.934 -4.754 -3.196 -4.730 0.812 -5.838 -5.033 -0.960 -5.230 -4.621 3.489 -4.951 0.575 -1.215 -4.531 -2.979 -3.624 ML 156 154 6 159 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 22 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 54 61 C G - - MP 161 160 6 165 6 2 2 21 39 -9.543 -9.483 -0.029 -8.259 -8.539 -6.465 -5.040 -5.028 -4.696 -1.104 -3.291 -5.088 3.357 -4.108 -4.712 -0.945 -4.997 -2.951 1.865 -5.065 -0.938 -3.510 ML 162 160 6 165 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 21 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 55 60 c g - - MP 167 166 6 171 4 2 2 19 37 -7.868 -8.075 -0.028 -6.489 -2.341 -2.472 -1.035 0.977 -2.268 -3.355 2.398 -2.703 -2.546 0.723 -3.107 -0.891 1.553 -2.656 0.234 -0.532 ML 168 166 6 171 4 1 1 20 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 170 166 6 171 4 0 0 19 37 -4.830 -4.511 -1.560 -0.781 IL 171 171 5 171 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 172 172 6 172 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 56 - a - - - ML 173 172 6 175 3 1 1 15 34 -8.858 -0.011 -7.512 0.893 -1.821 0.434 -0.973 D 174 172 6 175 3 0 0 15 34 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 57 - g - - - ML 176 175 3 178 3 1 1 14 33 -8.858 -0.011 -7.512 -0.155 -1.500 0.832 -0.047 D 177 175 3 178 3 0 0 14 33 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 58 - G - - - ML 179 178 3 181 3 1 1 12 31 -8.858 -0.610 -1.546 -0.444 -1.324 1.241 -0.996 D 180 178 3 181 3 0 0 13 32 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 59 - U - - - ML 182 181 3 184 2 1 1 1 1 * 0.000 -0.811 -1.309 -1.893 1.463 D 183 181 3 184 2 0 0 0 0 * 0.000 IL 184 184 3 184 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 53 ] - - - - - - E 185 184 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME RAGATH-30 ACC RF03055 DESC RAGATH-30 RNA LENG 59 MAXL 130 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 22:52:22 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 33 EFFN 8.527954 CKSUM 2033658646 STATS LOCAL MSV -7.5528 0.71908 STATS LOCAL VITERBI -8.3847 0.71908 STATS LOCAL FORWARD -3.5217 0.71908 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 0.94425 1.87481 1.46804 1.48163 1.38629 1.38629 1.38629 1.38629 0.04441 4.76654 3.35451 1.46634 0.26236 0.00000 * 1 2.94228 4.53813 0.08279 4.13389 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01764 4.73976 4.73976 1.46634 0.26236 0.39696 1.11584 2 2.63173 3.04221 3.07086 0.18160 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 3 0.58069 2.16819 1.72206 1.91456 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 4 0.07991 4.18354 3.12153 4.04747 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 5 0.07488 4.22107 3.20307 4.08468 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 6 0.08973 3.89876 3.86722 3.10921 6 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 7 0.02899 4.86036 4.47775 4.65999 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 8 4.18738 3.93736 4.74027 0.04439 8 U - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 9 0.02899 4.86036 4.47775 4.65999 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 10 0.02899 4.86036 4.47775 4.65999 10 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 11 4.18871 5.23098 0.03008 4.69749 11 G - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 12 0.09357 3.19376 3.76734 3.68102 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 13 0.24529 3.25206 2.26782 2.58646 13 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 14 1.11698 2.23755 2.69873 0.69570 14 u - - : 1.38629 1.38629 1.38629 1.38629 0.45959 1.02180 4.76654 0.69822 0.68810 1.09861 0.40547 15 2.52676 2.90628 2.23803 0.27610 20 U - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 16 1.82630 2.32828 3.14730 0.35873 21 U - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 17 0.09501 4.08890 2.90653 3.95211 22 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 18 3.07958 2.59048 3.00543 0.18691 23 U - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 19 4.58701 0.03698 4.99163 3.94608 24 C - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 20 4.18871 5.23098 0.03008 4.69749 25 G - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 21 0.02899 4.86036 4.47775 4.65999 26 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 22 0.18573 2.86927 3.37931 2.54221 27 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 23 1.30929 1.64413 2.64991 0.76325 28 u - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 24 0.76227 2.05018 2.29872 1.18976 29 a - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 25 0.87395 2.53189 1.32566 1.43732 30 a - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 26 0.47120 3.68055 1.14627 3.41978 31 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 27 2.55390 0.72434 2.60650 1.01119 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 28 3.76520 0.83016 3.57030 0.66805 33 U - - < 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 29 3.48633 1.01411 3.26580 0.56476 34 U - - < 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 30 1.10528 3.59134 0.49721 3.40835 35 G - - < 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 31 2.90399 0.93195 2.65994 0.73094 36 u - - < 1.38629 1.38629 1.38629 1.38629 0.09583 2.49049 4.76654 1.12677 0.39168 1.09861 0.40547 32 1.15727 2.40499 1.61917 0.92300 40 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 33 1.09300 1.95686 1.84827 1.00518 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 34 0.28661 2.40707 3.14869 2.15236 42 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 35 0.65864 3.64862 0.86381 3.35636 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 36 0.94451 2.83705 0.76502 2.43948 44 g - - > 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 37 3.63752 0.53835 3.39432 1.03169 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 38 0.70038 3.43021 0.83925 3.23936 46 a - - > 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 39 0.70704 3.72230 0.79240 3.50767 47 a - - > 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 40 1.08188 2.77921 0.64415 2.60580 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.05769 4.76654 3.04612 1.46634 0.26236 1.09861 0.40547 41 0.03081 4.79889 4.41851 4.60073 49 A - - - 1.38629 1.38629 1.38629 1.38629 0.01787 4.72672 4.72672 1.46634 0.26236 0.30600 1.33327 42 1.42418 1.96795 1.19588 1.14850 50 u - - < 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 43 4.96277 0.04016 4.91817 3.68647 51 C - - < 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 44 4.71093 3.14537 4.63113 0.06378 52 U - - < 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 45 2.23655 3.68137 0.17622 3.52175 53 G - - < 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 46 3.86205 0.35697 3.68951 1.36965 54 C - - < 1.38629 1.38629 1.38629 1.38629 0.03581 4.76654 3.62446 1.46634 0.26236 1.09861 0.40547 47 1.77823 0.93341 2.06082 1.16956 55 c - - < 1.38629 1.38629 1.38629 1.38629 0.01749 4.74822 4.74822 1.46634 0.26236 0.49367 0.94260 48 0.70850 3.03769 1.01688 2.32327 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 49 1.57391 2.71772 0.71047 1.44678 57 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 50 1.81592 2.42318 0.43321 2.30010 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.49326 4.76654 0.96533 1.46634 0.26236 1.09861 0.40547 51 2.16870 2.64123 3.10502 0.26192 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05767 4.30077 3.15869 1.46634 0.26236 0.04372 3.15178 52 1.56610 2.23377 0.72099 1.62077 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.01749 4.74822 4.74822 1.46634 0.26236 0.49367 0.94260 53 1.44582 3.84385 0.33381 3.61773 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 54 3.74242 0.29652 3.49528 1.59672 62 C - - > 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 55 0.09903 4.76512 2.60586 4.42906 63 A - - > 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 56 3.92850 5.02535 0.03550 4.75162 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 57 1.29633 1.35348 1.62919 1.30181 65 a - - > 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 58 0.18942 3.38003 3.45600 2.23529 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.01717 4.76654 4.76654 1.46634 0.26236 1.09861 0.40547 59 0.10402 4.04262 2.79543 3.90454 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.00862 4.75799 * 1.46634 0.26236 0.00000 * //