INFERNAL1/a [1.1.4 | Dec 2020] NAME DUF3800-VIII ACC RF03075 DESC DUF3800-VIII RNA STATES 196 NODES 41 CLEN 64 W 241 ALPH RNA RF no CONS yes MAP yes DATE Mon Dec 24 17:50:39 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 209 EFFN 14.794174 CKSUM 3713547164 NULL 0.000 0.000 0.000 0.000 GA 40.20 TC 40.20 NC 37.80 EFP7GF -20.1414 0.71892 ECMLC 0.59315 -5.73236 3.58475 1600000 301509 0.003980 ECMGC 0.43121 -18.11114 -3.35947 1600000 231539 0.001728 ECMLI 0.54786 -5.15944 4.59494 1600000 251218 0.004777 ECMGI 0.44810 -13.49813 -0.67503 1600000 125178 0.003195 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 241 450 -10.367 -10.306 -0.034 -6.469 -8.539 -6.988 IL 1 1 2 1 6 1 3 242 452 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 4 242 452 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 115 a u - - MP 3 2 3 7 6 2 9 241 451 -10.342 -10.281 -0.009 -9.058 -9.337 -9.732 -1.647 -2.185 -2.183 2.109 -0.797 -2.911 1.060 -1.391 -2.002 0.738 -2.963 0.222 1.352 -1.344 -0.439 -0.226 ML 4 2 3 7 6 1 2 239 448 -6.629 -6.975 -1.017 -1.217 -6.825 -4.355 0.214 -0.125 -0.581 0.327 MR 5 2 3 7 6 1 2 238 448 -7.034 -5.763 -1.671 -5.741 -0.794 -3.954 0.294 -0.368 -0.275 0.230 D 6 2 3 7 6 0 0 234 444 -9.396 -8.095 -1.829 -4.574 -4.591 -0.667 IL 7 7 5 7 6 1 3 240 450 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 3 240 450 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 114 a u - - MP 9 8 6 13 6 2 9 239 449 -10.362 -10.302 -0.009 -9.078 -9.358 -9.753 -0.730 -1.869 -1.892 1.995 -1.521 -2.880 1.110 -1.311 -2.404 0.992 -2.977 0.005 1.404 -2.477 -0.315 -0.179 ML 10 8 6 13 6 1 2 236 446 -6.335 -6.682 -1.396 -0.924 -6.531 -4.061 0.351 -0.543 0.129 -0.083 MR 11 8 6 13 6 1 2 236 446 -7.034 -5.763 -1.534 -5.741 -0.875 -3.954 0.297 -0.187 -0.328 0.132 D 12 8 6 13 6 0 0 230 440 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 3 238 448 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 3 238 448 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 113 a u - - MP 15 14 6 19 6 2 8 237 447 -10.364 -10.303 -0.009 -9.080 -9.360 -9.755 -1.435 -1.947 -2.351 2.011 -2.342 -3.203 1.514 -1.613 -2.085 0.870 -2.992 -0.328 1.465 -2.285 -0.567 0.042 ML 16 14 6 19 6 1 2 234 444 -6.335 -6.682 -1.396 -0.924 -6.531 -4.061 0.572 -0.525 -0.229 -0.051 MR 17 14 6 19 6 1 2 234 444 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 228 438 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 2 236 446 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 3 236 446 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 112 g c - - MP 21 20 6 25 6 2 8 235 445 -10.364 -10.303 -0.009 -9.080 -9.360 -9.755 -2.469 -1.259 -3.312 1.800 -2.993 -4.085 1.165 -3.383 -3.476 2.539 -3.963 0.468 0.152 -3.108 -1.111 -1.946 ML 22 20 6 25 6 1 1 232 442 -6.335 -6.682 -1.193 -1.090 -6.531 -4.061 0.351 -0.543 0.129 -0.083 MR 23 20 6 25 6 1 1 232 442 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 226 436 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 234 444 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 234 444 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 111 C G - - MP 27 26 6 31 6 2 7 233 443 -10.367 -6.116 -0.029 -9.083 -9.363 -9.758 -4.508 -4.342 -4.550 -0.191 -2.084 -5.379 3.213 -0.968 -4.463 0.272 -4.982 -2.096 1.097 -4.728 0.104 -2.520 ML 28 26 6 31 6 1 1 230 440 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 230 440 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 224 434 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 232 442 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 232 442 -2.665 -0.403 -6.176 -4.344 -5.449 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 109 C G - - MP 33 32 6 37 6 2 7 231 441 -10.367 -10.306 -0.009 -9.083 -9.363 -9.758 -6.553 -6.616 -6.072 -2.674 -4.539 -6.359 3.593 -3.025 -6.114 -2.540 -6.333 -4.609 0.633 -6.500 0.786 -4.897 ML 34 32 6 37 6 1 1 228 438 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 228 438 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 222 432 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 230 440 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 230 440 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 108 C G - - MP 39 38 6 43 6 2 7 229 439 -10.367 -10.306 -0.009 -9.083 -9.363 -9.758 -7.155 -7.352 -6.469 -3.517 -3.219 -6.611 3.867 -3.745 -6.630 -3.441 -6.655 -5.578 -1.165 -7.032 -1.016 -5.424 ML 40 38 6 43 6 1 1 226 436 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 226 436 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 220 430 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 228 438 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 228 438 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 107 U G - - MP 45 44 6 49 6 2 6 227 437 -10.367 -10.306 -0.009 -9.083 -9.363 -9.758 -6.407 -6.444 -5.992 -1.713 -4.570 -6.323 0.083 -5.403 -6.041 -2.599 -0.904 -3.425 -0.352 -2.850 3.669 -3.826 ML 46 44 6 49 6 1 1 224 434 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 224 434 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 218 428 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 226 436 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 226 436 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 106 g c - - MP 51 50 6 55 6 2 6 225 435 -10.367 -6.286 -0.026 -9.083 -9.363 -9.758 -4.474 -2.084 -4.332 0.931 -5.333 -3.795 -0.344 -4.986 -4.725 2.843 -3.674 2.037 -0.157 -2.076 -2.534 -2.812 ML 52 50 6 55 6 1 1 222 432 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 222 432 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 216 426 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 224 434 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 224 434 -2.637 -0.412 -6.148 -4.316 -5.421 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 104 C G - - MP 57 56 6 61 6 2 5 223 433 -3.211 -10.306 -0.177 -9.083 -8.094 -9.758 -4.622 -3.092 -4.651 0.121 -3.201 -5.490 3.128 -4.266 -4.539 0.094 -5.059 -2.068 1.754 -4.829 -0.269 -2.521 ML 58 56 6 61 6 1 1 220 430 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 220 430 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 215 424 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 2 222 432 -4.395 -4.658 -0.178 -6.313 -7.089 -6.750 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 222 432 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 12 103 u a - - MP 63 62 6 67 6 2 5 221 431 -10.364 -10.303 -0.018 -9.080 -6.955 -9.754 -2.115 -2.204 -2.097 1.182 -2.020 -2.981 1.688 -2.359 -2.486 0.827 -3.059 -0.925 2.315 -2.222 0.049 -1.203 ML 64 62 6 67 6 1 1 218 428 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 218 428 -7.071 -5.800 -1.708 -3.754 -0.912 -3.991 0.587 -0.535 -0.238 -0.059 D 66 62 6 67 6 0 0 213 423 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 220 430 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 220 430 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 13 102 u a - - MP 69 68 6 73 6 2 4 219 429 -2.746 -6.544 -0.259 -9.070 -9.350 -9.745 -1.142 -1.414 0.083 0.904 -1.805 -1.004 1.561 -2.681 -1.488 1.182 -1.734 -1.045 1.597 -1.520 0.054 -0.922 ML 70 68 6 73 6 1 1 216 426 -6.345 -6.691 -1.180 -1.100 -6.541 -4.071 0.242 -0.364 -0.334 0.319 MR 71 68 6 73 6 1 1 216 426 -4.266 -5.956 -1.388 -5.934 -1.068 -4.148 0.796 -0.685 -0.406 -0.174 D 72 68 6 73 6 0 0 211 421 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 2 218 428 -4.749 -4.138 -0.179 -6.667 -7.444 -7.104 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 218 428 -2.684 -0.397 -6.195 -4.363 -5.469 0.000 0.000 0.000 0.000 [ MATP 13 ] 15 100 u a - - MP 75 74 6 79 6 2 4 217 427 -1.796 -5.963 -0.532 -9.083 -9.363 -9.758 -0.819 -2.355 -0.703 1.080 -0.643 -2.074 1.284 -2.412 -1.724 0.840 -2.717 -0.776 2.155 -2.280 0.118 -1.197 ML 76 74 6 79 6 1 1 214 424 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 214 424 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 210 420 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 2 216 426 -5.533 -2.738 -0.295 -7.451 -8.227 -7.888 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 216 425 -3.286 -0.249 -6.797 -4.965 -6.071 0.000 0.000 0.000 0.000 [ MATP 14 ] 17 98 u a - - MP 81 80 6 85 6 2 4 215 424 -10.367 -10.306 -0.020 -9.083 -6.802 -9.758 -1.691 -1.457 -2.199 1.114 -1.864 -3.230 1.503 -2.726 -2.281 1.624 -3.019 -0.943 2.076 -1.798 -0.496 -1.207 ML 82 80 6 85 6 1 1 213 422 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 212 422 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 209 419 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 214 424 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 214 423 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 18 97 c g - - MP 87 86 6 91 6 2 4 213 422 -10.356 -10.295 -0.009 -9.072 -9.352 -9.747 -3.029 -0.992 -3.190 0.682 -1.434 -4.036 2.224 -3.154 -3.226 1.902 -3.784 -1.277 1.059 -3.333 0.794 -2.316 ML 88 86 6 91 6 1 1 211 421 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 211 420 -7.258 -5.987 -1.186 -5.965 -1.099 -4.178 0.829 -0.711 -0.437 -0.195 D 90 86 6 91 6 0 0 208 418 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 212 422 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 212 421 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 19 96 C G - - MP 93 92 6 97 4 2 2 211 420 -9.166 -9.373 -0.011 -7.787 -6.906 -7.124 -6.272 -3.307 -4.649 -6.449 3.762 -2.550 -6.361 -3.246 -6.504 -5.392 -1.327 -6.769 0.576 -5.158 ML 94 92 6 97 4 1 1 210 419 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 209 418 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 207 417 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 210 420 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 210 420 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 20 - G - - - ML 99 98 6 101 3 1 2 209 418 -10.099 -0.005 -8.753 -3.261 -5.559 1.935 -4.321 D 100 98 6 101 3 0 0 206 416 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 209 419 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 21 - A - - - ML 102 101 3 104 3 1 1 208 417 -10.099 -0.005 -8.753 1.978 -5.986 -5.392 -5.619 D 103 101 3 104 3 0 0 206 415 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 208 418 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 22 - A - - - ML 105 104 3 107 3 1 1 207 416 -10.415 -0.004 -8.733 1.978 -5.986 -5.392 -5.619 D 106 104 3 107 3 0 0 205 415 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 207 417 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 95 - A - - MR 108 107 3 110 3 1 1 206 416 -10.415 -0.004 -8.733 1.978 -5.986 -5.392 -5.619 D 109 107 3 110 3 0 0 204 414 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 1 206 416 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 94 - U - - MR 111 110 3 113 3 1 1 205 415 -10.415 -0.504 -1.765 -5.078 -4.631 -5.905 1.968 D 112 110 3 113 3 0 0 203 413 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 205 415 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 93 - G - - MR 114 113 3 116 3 1 1 204 414 -9.917 -0.025 -5.936 -1.436 -2.266 1.609 -1.428 D 115 113 3 116 3 0 0 203 412 -9.868 -5.046 -0.046 IR 116 116 3 116 3 1 1 204 414 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 92 - U - - MR 117 116 3 119 3 1 1 203 413 -9.898 -0.012 -7.097 -0.108 -0.655 -1.732 1.095 D 118 116 3 119 3 0 0 202 412 -9.909 -5.087 -0.045 IR 119 119 3 119 3 1 1 204 413 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 91 - a - - MR 120 119 3 122 3 1 1 202 412 -9.892 -0.006 -8.210 0.749 -0.966 -1.219 0.462 D 121 119 3 122 3 0 0 202 412 -9.921 -5.099 -0.044 IR 122 122 3 122 3 1 1 203 412 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 90 - U - - MR 123 122 3 125 3 1 1 201 411 -9.892 -0.203 -2.939 -0.747 -0.960 -0.480 1.120 D 124 122 3 125 3 0 0 203 412 -9.921 -5.099 -0.044 IR 125 125 3 125 3 1 1 201 411 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 89 - U - - MR 126 125 3 128 3 1 1 200 410 -0.964 -1.048 -8.014 -1.288 -0.046 -1.863 1.231 D 127 125 3 128 3 0 0 203 412 -0.469 -2.101 -4.491 IR 128 128 3 128 3 1 1 206 416 -0.127 -3.582 -10.923 0.000 0.000 0.000 0.000 [ MATR 27 ] - 47 - A - - MR 129 128 3 131 5 1 1 34 52 -9.079 -0.010 -8.895 -9.107 -9.998 1.567 -2.320 -0.785 -1.958 D 130 128 3 131 5 0 0 33 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 35 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 46 g u - - MP 132 131 3 136 6 2 2 33 51 -10.367 -10.306 -0.013 -7.819 -9.363 -9.758 -1.661 0.830 -7.640 -0.015 -5.708 -1.147 0.811 -2.271 -1.108 -0.065 -0.181 2.780 -1.382 -2.116 -1.518 -1.542 ML 133 131 3 136 6 1 1 32 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 32 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 30 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 33 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 33 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 45 c g - - MP 138 137 6 142 6 2 2 31 49 -10.363 -10.302 -0.009 -9.079 -9.359 -9.754 -2.236 -2.444 -2.201 0.603 -0.164 -3.283 2.055 -2.767 -1.389 0.550 -0.687 -0.492 2.014 -1.900 -0.368 -1.690 ML 139 137 6 142 6 1 1 30 47 -6.364 -6.710 -1.157 -1.119 -6.560 -4.089 0.225 -0.029 -0.432 0.150 MR 140 137 6 142 6 1 1 30 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 28 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 31 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 31 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 44 C G - - MP 144 143 6 148 6 2 2 29 47 -10.367 -10.306 -0.009 -9.083 -9.363 -9.758 -6.353 -6.342 -5.950 -2.344 -3.211 -6.303 3.706 -3.630 -5.965 -1.602 -6.226 -4.227 0.740 -6.340 -1.398 -4.737 ML 145 143 6 148 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 26 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 29 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 43 c g - - MP 150 149 6 154 6 2 2 27 45 -10.367 -10.306 -0.009 -9.083 -9.363 -9.758 -6.256 -6.235 -5.888 -2.245 -3.359 -6.267 2.777 -5.264 -5.897 -2.083 -6.174 -4.113 2.180 -6.263 1.944 -4.674 ML 151 149 6 154 6 1 1 26 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 24 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 42 c g - - MP 156 155 6 160 6 2 2 25 43 -10.367 -10.306 -0.009 -9.083 -9.363 -9.758 -2.869 -1.468 -3.042 0.166 -1.425 -3.460 2.218 -2.651 -3.079 0.536 -3.643 -1.454 1.365 -3.189 1.972 -1.456 ML 157 155 6 160 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 28 41 a u - - MP 162 161 6 166 6 2 2 23 41 -10.367 -10.306 -0.009 -9.083 -9.363 -9.758 -4.649 -0.568 -4.523 2.829 -5.542 -5.207 -0.786 -5.133 -4.863 2.359 -5.173 0.035 -0.216 -4.450 -2.757 -2.248 ML 163 161 6 166 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 6 1 1 22 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 165 161 6 166 6 0 0 20 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 166 166 5 166 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 167 167 6 167 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 29 40 c g - - MP 168 167 6 172 6 2 2 21 39 -10.367 -10.306 -0.012 -9.083 -9.363 -8.213 -4.537 -4.240 -4.569 2.233 -3.785 -5.387 2.747 -3.919 -4.523 1.036 -3.998 -1.992 0.432 -4.733 -1.351 -3.347 ML 169 167 6 172 6 1 1 20 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 170 167 6 172 6 1 1 20 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 171 167 6 172 6 0 0 18 35 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 172 172 5 172 6 1 1 21 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 173 173 6 173 5 1 1 21 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 30 39 G C - - MP 174 173 6 178 6 2 2 19 37 -10.364 -10.303 -0.009 -9.080 -9.359 -9.754 -5.300 -3.089 -5.215 -0.280 -6.423 -5.749 -1.019 -5.771 -5.317 3.740 -5.641 -0.901 -1.753 -5.107 -3.513 -3.165 ML 175 173 6 178 6 1 1 18 36 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 176 173 6 178 6 1 1 18 36 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 177 173 6 178 6 0 0 16 34 -9.173 -7.871 -3.668 -4.350 -4.368 -0.290 IL 178 178 5 178 6 1 1 19 37 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 179 179 6 179 5 1 1 19 36 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 31 38 U A - - MP 180 179 6 184 4 2 2 17 35 -9.162 -1.889 -0.466 -7.783 -5.550 -5.430 -2.410 -0.489 -4.159 -5.977 1.380 -4.899 -5.349 -1.241 -5.744 -3.210 3.437 -5.669 -0.208 -4.139 ML 181 179 6 184 4 1 1 17 34 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 182 179 6 184 4 1 1 17 34 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 183 179 6 184 4 0 0 16 33 -4.685 -4.366 -1.893 -0.636 IL 184 184 5 184 4 1 1 19 35 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 185 185 6 185 3 1 1 16 34 -1.976 -0.448 -6.295 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - U - - - ML 186 185 6 188 3 1 1 13 32 -10.099 -0.005 -8.753 -1.095 -2.082 -1.627 1.571 D 187 185 6 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - C - - - ML 189 188 3 191 3 1 1 12 30 -10.099 -0.015 -6.722 -1.489 1.300 -1.950 -0.115 D 190 188 3 191 3 0 0 13 32 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - C - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -1.080 1.472 -2.736 -0.730 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 40 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME DUF3800-VIII ACC RF03075 DESC DUF3800-VIII RNA LENG 64 MAXL 253 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Dec 24 17:50:39 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 209 EFFN 119.294174 CKSUM 3713547164 STATS LOCAL MSV -7.6533 0.71892 STATS LOCAL VITERBI -8.5344 0.71892 STATS LOCAL FORWARD -3.4356 0.71892 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.53477 1.43553 1.23715 1.36142 1.38629 1.38629 1.38629 1.38629 0.01347 6.99082 4.38493 1.46634 0.26236 0.00000 * 1 0.90292 1.85059 1.74769 1.33448 1 a - - < 1.38629 1.38629 1.38629 1.38629 0.00186 6.97921 6.97921 1.46634 0.26236 0.28544 1.39306 2 0.88585 1.96360 1.67007 1.35074 2 a - - < 1.38629 1.38629 1.38629 1.38629 0.00185 6.98911 6.98911 1.46634 0.26236 0.53027 0.88782 3 0.96974 1.63510 1.91710 1.27708 3 a - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 4 1.22067 1.90998 0.69414 2.85807 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 5 3.93212 0.24885 3.13320 1.85073 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 6 6.56602 0.21191 6.56354 1.67055 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 7 6.60822 0.04739 6.59370 3.13347 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 8 4.42938 3.78386 3.17569 0.07950 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 9 2.36467 3.69523 0.20689 2.68720 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 10 3.07646 0.39376 3.54555 1.38427 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.17664 1.84602 5.50853 0.01162 4.46094 1.09861 0.40547 11 1.89727 1.48142 2.25559 0.65798 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.00862 6.98768 4.87135 1.46634 0.26236 0.37448 1.16362 12 1.41465 1.40752 1.61093 1.16303 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.24644 1.52557 6.98408 0.00850 4.77216 0.21587 1.63906 13 1.56031 1.62588 2.05247 0.76620 15 u - - < 1.38629 1.38629 1.38629 1.38629 0.54822 0.86488 6.99082 0.00437 5.43629 1.09861 0.40547 14 1.83748 1.71716 1.33789 0.91927 17 u - - < 1.38629 1.38629 1.38629 1.38629 0.01281 6.99082 4.43873 1.46634 0.26236 1.09861 0.40547 15 2.20209 1.01123 1.18653 1.51241 18 c - - < 1.38629 1.38629 1.38629 1.38629 0.00186 6.97987 6.97987 1.46634 0.26236 0.14482 2.00377 16 6.55482 0.10304 6.55763 2.35317 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 17 3.95245 7.52537 0.02701 4.97647 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 18 0.00204 7.64369 7.11774 7.19889 21 A - - - 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 19 0.00204 7.64369 7.11774 7.19889 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 20 3.91953 3.40770 0.10445 3.07454 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 21 3.18029 0.86842 1.76699 0.99977 24 c - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 22 6.44669 0.11491 4.65635 2.32828 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 23 6.58061 0.82258 6.56903 0.58355 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 24 3.28563 0.98663 2.91312 0.62465 27 U - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 25 0.43243 5.80606 1.21859 2.94852 28 A - - < 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 26 0.96731 0.71002 2.22044 3.92719 29 c - - < 1.38629 1.38629 1.38629 1.38629 0.00509 6.99082 5.48214 1.46634 0.26236 1.09861 0.40547 27 4.80257 4.31091 0.02803 5.11414 30 G - - < 1.38629 1.38629 1.38629 1.38629 0.00185 6.98758 6.98758 1.46634 0.26236 1.87499 0.16648 28 3.18331 2.17986 6.51815 0.16958 31 U - - < 1.38629 1.38629 1.38629 1.38629 0.00185 6.98758 6.98758 1.46634 0.26236 0.36631 1.18184 29 2.28893 3.51186 2.58278 0.23165 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 30 2.87567 0.38454 2.89712 1.57179 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00978 6.99082 4.73134 1.46634 0.26236 1.09861 0.40547 31 2.23687 0.27249 3.77782 2.21775 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.35358 1.22541 5.47422 0.25440 1.49335 0.18964 1.75597 32 0.22626 6.65455 1.75764 3.54923 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.00185 6.98758 6.98758 1.46634 0.26236 1.87499 0.16648 33 6.76155 0.04030 4.29768 3.69917 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.00185 6.98758 6.98758 1.46634 0.26236 0.36631 1.18184 34 4.03747 2.25966 0.70339 0.95955 40 g - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 35 3.22559 1.21252 5.60817 0.41680 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 36 1.82345 2.50966 0.32697 3.32061 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 37 1.21475 6.77741 0.35589 6.48436 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 38 2.41042 4.69701 0.11038 5.18313 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.00564 6.99082 5.36003 1.46634 0.26236 1.09861 0.40547 39 0.80570 2.80402 0.86598 2.63084 45 a - - > 1.38629 1.38629 1.38629 1.38629 0.00185 6.98703 6.98703 1.46634 0.26236 0.33042 1.26806 40 3.98920 2.79383 1.73704 0.29537 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 41 0.24286 3.53556 1.90314 3.28680 47 A - - - 1.38629 1.38629 1.38629 1.38629 1.54479 0.37599 2.30223 2.51613 0.08422 1.09861 0.40547 42 3.19220 1.35074 3.23153 0.41495 89 U - - - 1.38629 1.38629 1.38629 1.38629 0.47812 6.88644 0.97013 1.46634 0.26236 0.01823 4.01368 43 2.49270 2.35746 1.63684 0.46512 90 U - - - 1.38629 1.38629 1.38629 1.38629 0.00279 6.57448 6.57448 1.46634 0.26236 5.92169 0.00268 44 0.73501 2.43638 2.77021 0.99324 91 a - - - 1.38629 1.38629 1.38629 1.38629 0.00279 6.57448 6.57448 1.46634 0.26236 4.45074 0.01174 45 1.49868 1.99403 3.53094 0.49241 92 U - - - 1.38629 1.38629 1.38629 1.38629 0.00278 6.57915 6.57915 1.46634 0.26236 3.40938 0.03362 46 3.00616 3.43855 0.17438 2.54559 93 G - - - 1.38629 1.38629 1.38629 1.38629 0.00274 6.59462 6.59462 1.46634 0.26236 0.00559 5.18868 47 8.13190 7.36896 8.99991 0.00105 94 U - - - 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 48 0.00204 7.64369 7.11774 7.19889 95 A - - - 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 49 5.35181 6.44215 0.01900 4.38267 96 G - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 50 2.13941 1.08991 0.76043 2.54386 97 g - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 51 0.97061 1.25785 1.67006 1.90616 98 a - - > 1.38629 1.38629 1.38629 1.38629 0.09187 2.44353 6.99082 0.02106 3.87096 1.09861 0.40547 52 0.69872 2.18045 1.43748 1.88217 100 a - - > 1.38629 1.38629 1.38629 1.38629 0.02695 3.79258 5.50853 0.07976 2.56839 1.09861 0.40547 53 1.28787 1.41795 1.00513 2.15473 102 g - - > 1.38629 1.38629 1.38629 1.38629 0.00185 6.98768 6.98768 1.46634 0.26236 0.37448 1.16362 54 0.79474 2.25712 1.30104 1.76375 103 a - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 55 1.58524 3.40592 0.33924 3.00347 104 G - - > 1.38629 1.38629 1.38629 1.38629 0.01962 3.98950 6.99082 0.09664 2.38472 1.09861 0.40547 56 3.16022 0.74633 3.58797 0.78565 106 c - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 57 3.59705 4.58015 0.05758 4.00119 107 G - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 58 3.91046 6.70028 0.02820 5.02990 108 G - - > 1.38629 1.38629 1.38629 1.38629 0.00184 6.99082 6.99082 1.46634 0.26236 1.09861 0.40547 59 2.52929 6.66260 0.09405 4.73604 109 G - - > 1.38629 1.38629 1.38629 1.38629 0.02202 3.87008 6.99082 0.08603 2.49581 1.09861 0.40547 60 2.29821 3.18551 0.24141 2.62158 111 G - - > 1.38629 1.38629 1.38629 1.38629 0.00465 6.99082 5.59324 1.46634 0.26236 1.09861 0.40547 61 3.15603 0.83981 1.85146 0.99803 112 c - - > 1.38629 1.38629 1.38629 1.38629 0.00185 6.98801 6.98801 1.46634 0.26236 1.79930 0.18082 62 1.59887 2.21828 1.69149 0.68352 113 U - - > 1.38629 1.38629 1.38629 1.38629 0.00185 6.98801 6.98801 1.46634 0.26236 1.79930 0.18082 63 1.47262 2.03169 2.09752 0.66009 114 U - - > 1.38629 1.38629 1.38629 1.38629 0.02301 6.98801 3.82472 1.46634 0.26236 1.79930 0.18082 64 1.52402 2.20686 2.32624 0.55433 115 U - - > 1.38629 1.38629 1.38629 1.38629 0.00094 6.96595 * 1.46634 0.26236 0.00000 * //