INFERNAL1/a [1.1.4 | Dec 2020] NAME L19-Flavobacteria ACC RF03130 DESC L19-Flavobacteria ribosomal protein leader STATES 94 NODES 23 CLEN 30 W 91 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 1 10:36:25 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 460 EFFN 460.000000 CKSUM 1501523951 NULL 0.000 0.000 0.000 0.000 GA 31.50 TC 31.50 NC 31.40 EFP7GF -20.0716 0.72919 ECMLC 0.69552 -3.99774 4.57147 1600000 465168 0.002580 ECMGC 0.43413 -21.88569 -7.01180 1600000 254901 0.001569 ECMLI 0.61860 -4.70764 4.80192 1600000 430511 0.002787 ECMGI 0.46730 -19.55416 -6.06417 1600000 218680 0.001829 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 91 167 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 IL 1 1 2 1 6 1 4 92 169 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 4 92 169 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 37 u g - - MP 3 2 3 7 6 2 11 91 168 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 -9.095 -3.069 -9.093 -1.486 -5.565 -9.933 2.606 -8.610 -8.951 -1.406 -9.463 -6.364 1.498 -7.031 2.617 -4.426 ML 4 2 3 7 6 1 4 89 166 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 3 88 165 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 1 85 162 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 4 90 167 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 4 90 167 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 36 A U - - MP 9 8 6 13 6 2 9 89 166 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 -10.802 -1.514 -10.997 3.941 -13.127 -14.286 -8.587 -11.039 -10.557 -6.124 -11.227 -6.749 -8.517 -12.302 -10.419 -1.948 ML 10 8 6 13 6 1 3 87 164 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 3 87 163 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 1 84 160 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 4 88 165 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 4 88 165 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 35 A U - - MP 15 14 6 19 6 2 7 87 164 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 -10.802 -9.462 -10.997 3.952 -13.129 -14.288 -8.589 -11.039 -10.557 -0.989 -11.227 -6.749 -8.517 -12.302 -10.420 -9.595 ML 16 14 6 19 6 1 3 85 162 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 85 162 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 83 159 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 86 163 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 86 163 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 34 C G - - MP 21 20 6 25 4 2 5 85 162 -13.982 -14.189 -0.002 -9.368 -12.711 -12.953 -8.365 -12.378 -6.600 -7.849 3.998 -13.807 -14.488 -11.115 -7.874 -12.923 -9.619 -13.578 -10.785 -13.042 ML 22 20 6 25 4 1 3 84 161 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 1 83 160 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 0 82 159 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 3 85 162 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 3 84 161 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 27 26 6 29 3 1 5 83 160 -14.891 -0.000 -13.545 -11.177 1.999 -11.897 -9.759 D 28 26 6 29 3 0 0 81 158 -7.509 -0.461 -1.900 IL 29 29 3 29 3 1 2 83 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 30 29 3 32 3 1 5 82 159 -14.892 -0.000 -13.547 -2.686 -7.559 -0.248 1.584 D 31 29 3 32 3 0 0 80 157 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 2 82 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - C - - - ML 33 32 3 35 3 1 4 81 158 -15.186 -0.000 -13.504 -11.180 1.999 -11.900 -9.761 D 34 32 3 35 3 0 0 79 156 -5.620 -0.734 -1.403 IL 35 35 3 35 3 1 1 81 158 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 33 - U - - MR 36 35 3 38 5 1 4 80 157 -13.827 -0.000 -13.642 -13.855 -14.746 -2.734 -1.512 -8.419 1.806 D 37 35 3 38 5 0 0 78 155 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 1 80 157 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 8 32 U A - - MP 39 38 3 43 4 2 5 79 156 -13.982 -14.189 -0.000 -12.604 -12.437 -12.100 -12.319 -11.692 -10.510 -12.175 -11.131 -12.007 -10.409 -11.693 -12.515 -12.012 3.996 -10.505 -5.743 -5.527 ML 40 38 3 43 4 1 1 78 155 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 4 1 1 77 154 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 3 43 4 0 0 76 153 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 1 79 156 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 1 78 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 45 44 6 47 3 1 3 77 154 -15.186 -0.000 -13.504 -3.181 -11.187 1.959 -10.168 D 46 44 6 47 3 0 0 75 152 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 1 77 154 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 31 - A - - MR 48 47 3 50 3 1 3 76 153 -15.186 -0.000 -13.504 1.555 -2.047 -1.996 -0.815 D 49 47 3 50 3 0 0 74 150 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 76 153 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 30 - G - - MR 51 50 3 53 5 1 3 75 152 -13.827 -0.000 -13.642 -13.855 -14.746 -3.885 -10.874 1.957 -4.347 D 52 50 3 53 5 0 0 73 150 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 1 75 152 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 29 a u - - MP 54 53 3 58 6 2 4 74 151 -14.770 -14.709 -0.000 -13.485 -13.765 -14.160 -10.802 -9.462 -10.997 2.893 -13.138 -14.293 -8.596 -11.039 -10.557 0.696 -11.227 2.796 -8.520 -12.302 -10.426 -9.595 ML 55 53 3 58 6 1 1 72 149 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 1 71 148 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 67 144 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 73 150 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 73 150 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 28 C G - - MP 60 59 6 64 6 2 2 72 149 -14.770 -14.709 -0.072 -13.485 -13.765 -4.363 -11.808 -12.073 -11.129 -1.373 -9.483 -11.277 3.892 -10.396 -11.231 -8.288 -11.352 -10.449 -0.403 -11.647 -7.186 -10.033 ML 61 59 6 64 6 1 1 70 147 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 70 146 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 64 141 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 71 148 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 71 148 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 27 G C - - MP 66 65 6 70 6 2 2 70 147 -14.698 -14.637 -0.659 -13.414 -13.693 -1.449 -11.973 -0.535 -12.860 1.106 -13.792 -10.677 -0.761 -12.817 -10.582 3.650 -10.858 -7.056 -8.721 -11.019 -10.730 -11.575 ML 67 65 6 70 6 1 1 69 145 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 68 145 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 61 138 -14.463 -13.161 -8.958 -9.640 -9.657 -0.007 IL 70 70 5 70 6 1 1 71 147 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 70 147 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 26 A U - - MP 72 71 6 76 4 2 2 70 146 -1.906 -13.448 -0.449 -11.862 -10.058 -8.718 -10.253 3.576 -12.384 -13.521 -7.840 -10.296 -9.814 1.725 -10.483 -3.227 -0.640 -11.550 -9.673 -8.852 ML 73 71 6 76 4 1 1 65 142 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 64 141 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 61 138 -12.886 -3.788 -0.112 -8.838 IL 76 76 5 76 4 1 1 73 150 -8.218 -0.013 -7.649 -11.387 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 72 149 -0.346 -2.233 -12.127 0.000 0.000 0.000 0.000 [ MATL 17 ] 15 - A - - - ML 78 77 6 80 3 1 1 12 31 -14.892 -0.000 -13.547 1.560 -2.640 -1.900 -0.683 D 79 77 6 80 3 0 0 16 35 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 16 - A - - - ML 81 80 3 83 3 1 1 11 30 -14.892 -0.000 -13.547 1.106 -0.617 -0.790 -0.696 D 82 80 3 83 3 0 0 15 34 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 17 - A - - - ML 84 83 3 86 3 1 1 10 28 -14.892 -0.707 -1.368 1.480 -2.507 -0.314 -2.124 D 85 83 3 86 3 0 0 14 33 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - u - - - ML 87 86 3 89 3 1 1 9 27 -14.186 -0.152 -3.323 0.492 -2.039 -0.277 0.609 D 88 86 3 89 3 0 0 7 26 -14.946 -10.459 -0.001 IL 89 89 3 89 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - a - - - ML 90 89 3 92 2 1 1 1 1 * 0.000 0.880 0.057 -0.028 -2.856 D 91 89 3 92 2 0 0 0 0 * 0.000 IL 92 92 3 92 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 22 ] - - - - - - E 93 92 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME L19-Flavobacteria ACC RF03130 DESC L19-Flavobacteria ribosomal protein leader LENG 30 MAXL 90 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 1 10:36:25 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 460 EFFN 460.000000 CKSUM 1501523951 STATS LOCAL MSV -6.5617 0.72919 STATS LOCAL VITERBI -7.1750 0.72919 STATS LOCAL FORWARD -3.4689 0.72919 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.31290 1.54037 1.38423 1.32373 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 0.00000 * 1 3.50618 0.96225 3.70614 0.57379 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 2 0.01844 8.38162 6.45318 4.10657 2 A - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 3 0.03330 8.35869 3.43688 7.94565 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 4 8.18610 0.00080 7.96895 8.63921 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.00178 8.43858 6.45861 1.46634 0.26236 1.09861 0.40547 5 9.13367 0.00046 9.63291 8.15069 5 C - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43723 8.43723 1.46634 0.26236 0.24385 1.53067 6 3.24784 6.62565 1.55791 0.28869 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 7 9.13540 0.00046 9.63481 8.15219 7 C - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 8 9.27944 9.01822 9.06577 0.00033 8 U - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 9 3.59086 9.14086 0.02830 8.43452 9 G - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 10 0.76735 8.41336 0.62512 7.99392 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 11 3.71999 0.07513 8.02455 3.04038 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.05079 8.43858 3.00981 1.46634 0.26236 1.09861 0.40547 12 1.72747 3.29795 0.24204 8.16502 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.46347 8.38825 0.99242 1.46634 0.26236 5.43751 0.00436 13 0.29344 7.78473 1.54424 3.20847 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.31050 1.32216 7.92550 0.00271 5.91236 0.00108 6.83413 14 0.30494 3.21595 2.70323 1.85964 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 15 0.61976 1.81418 1.93369 1.86861 16 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 16 0.36009 3.12430 1.60411 2.85854 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.49022 8.43858 0.94858 1.46634 0.26236 1.09861 0.40547 17 1.04556 2.79953 1.57861 0.96390 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.10575 7.94907 2.30261 1.46634 0.26236 7.49112 0.00056 18 0.77633 1.34660 1.40546 3.36589 19 a - - _ 1.38629 1.38629 1.38629 1.38629 2.76854 1.07340 0.51852 1.52104 0.24652 0.10406 2.31435 19 3.21037 1.57575 7.54833 0.28465 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.04814 7.97292 3.06492 1.46634 0.26236 0.05639 2.90360 20 8.24580 0.18915 3.29715 2.00186 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.00046 8.38825 8.38825 1.46634 0.26236 0.00874 4.74437 21 3.04825 8.16742 0.07476 3.71681 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 22 8.17896 2.28939 8.17418 0.10746 29 U - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 23 4.07889 8.92349 0.02978 4.39973 30 G - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 24 0.30826 2.80550 2.76988 1.95100 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 25 0.00277 9.15180 6.69545 6.55180 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 26 3.28153 2.43457 7.22159 0.13460 33 U - - - 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 27 7.14140 7.97072 0.00122 9.45975 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 28 8.09999 3.45418 8.11760 0.03275 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 29 8.13244 3.78005 8.13935 0.02369 36 U - - > 1.38629 1.38629 1.38629 1.38629 0.00043 8.43858 8.43858 1.46634 0.26236 1.09861 0.40547 30 1.72511 3.45517 0.26904 3.64373 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.00022 8.43837 * 1.46634 0.26236 0.00000 * //