INFERNAL1/a [1.1.4 | Dec 2020] NAME L25-Gammaproteobacteria ACC RF03131 DESC L25-Gammaproteobacteria ribosomal protein leader STATES 82 NODES 18 CLEN 26 W 36 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 1 10:35:31 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 381 EFFN 381.000000 CKSUM 1715434718 NULL 0.000 0.000 0.000 0.000 GA 34.10 TC 34.30 NC 34.00 EFP7GF -18.4622 0.73155 ECMLC 0.67661 -4.16148 4.57495 1600000 442948 0.002709 ECMGC 0.48462 -21.58381 -6.29221 1600000 661419 0.000605 ECMLI 0.68323 -3.65752 4.88295 1600000 410532 0.002923 ECMGI 0.48507 -20.10946 -5.47831 1600000 483429 0.000827 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 36 55 -14.502 -14.442 -0.008 -13.218 -7.599 -13.893 IL 1 1 2 1 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 1 38 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 28 C G - - MP 3 2 3 7 6 2 2 36 55 -14.495 -14.434 -0.001 -13.211 -13.491 -13.886 -8.802 -8.504 -4.721 0.176 -4.199 -9.646 3.606 -2.898 -8.661 -1.624 -4.065 -0.705 0.420 -8.985 -3.146 -7.380 ML 4 2 3 7 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 1 35 54 -8.781 -7.510 -0.313 -7.488 -2.622 -5.701 -1.514 -1.505 -2.249 1.626 D 6 2 3 7 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 1 36 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 27 C G - - MP 9 8 6 13 6 2 2 34 53 -14.502 -14.442 -0.000 -13.218 -13.498 -13.893 -10.993 -11.019 -10.531 1.093 -9.008 -10.837 3.395 -9.862 -10.562 -1.165 -10.793 -8.957 -1.022 -10.953 1.260 -9.340 ML 10 8 6 13 6 1 1 33 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 1 33 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 34 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 26 U A - - MP 15 14 6 19 6 2 2 32 51 -14.502 -14.442 -0.000 -13.218 -13.498 -13.893 -4.991 -11.761 -10.842 1.546 -9.202 -10.998 0.553 -10.113 -10.940 -7.949 -11.068 -10.104 3.498 -11.355 -1.866 -9.741 ML 16 14 6 19 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 25 G C - - MP 21 20 6 25 6 2 2 30 49 -14.502 -14.442 -0.000 -13.218 -13.498 -13.893 -11.662 -9.092 -12.446 1.182 -13.647 -10.617 -8.350 -12.385 -10.390 3.718 -10.700 -0.833 -8.585 -10.933 -10.609 -11.108 ML 22 20 6 25 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 24 c g - - MP 27 26 6 31 6 2 2 28 47 -14.502 -14.442 -0.000 -13.218 -13.498 -13.893 -11.541 -11.823 -10.858 -8.059 -2.857 -11.003 2.802 -10.124 -10.962 -8.031 -11.082 -10.227 2.112 -11.375 2.187 -9.764 ML 28 26 6 31 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 23 U A - - MP 33 32 6 37 6 2 2 26 45 -14.502 -14.442 -0.000 -13.218 -13.498 -13.893 -11.120 -11.204 -10.610 -1.479 -4.371 -10.874 0.926 -3.720 -10.658 -7.140 -10.863 -9.223 3.676 -2.472 -1.276 -2.117 ML 34 32 6 37 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 22 G U - - MP 39 38 6 43 6 2 2 24 43 -14.502 -14.442 -0.011 -7.114 -13.498 -13.893 -10.531 -9.191 -10.726 2.007 -12.867 -14.022 -8.325 -10.769 -2.222 1.065 -10.956 3.272 -8.250 -12.031 -10.156 -9.324 ML 40 38 6 43 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 21 C G - - MP 45 44 6 49 4 2 2 22 41 -4.172 -13.908 -0.083 -12.322 -11.530 -11.811 -10.848 -8.048 -9.199 -10.992 3.965 -10.114 -10.952 -8.020 -11.072 -10.214 -5.931 -11.365 -1.498 -9.753 ML 46 44 6 49 4 1 1 24 42 -5.745 -5.928 -0.112 -4.657 -2.444 1.769 -3.274 -1.720 MR 47 44 6 49 4 1 1 25 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 0 24 42 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 1 23 41 -6.449 -7.133 -0.029 -9.618 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 1 27 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - U - - - ML 51 50 6 53 3 1 1 19 38 -14.916 -0.000 -13.233 -11.811 -10.485 -13.313 2.000 D 52 50 6 53 3 0 0 19 37 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 1 22 39 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 20 - U - - MR 54 53 3 56 5 1 1 18 37 -13.557 -0.000 -13.372 -13.584 -14.476 -9.021 -8.703 -2.045 1.908 D 55 53 3 56 5 0 0 19 38 -5.352 -0.707 -2.978 -4.409 -2.404 IR 56 56 3 56 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 19 G C - - MP 57 56 3 61 6 2 2 17 36 -14.502 -14.442 -0.003 -9.354 -13.498 -13.893 -12.353 -9.073 -14.272 -6.516 -0.071 -10.253 -8.250 -13.819 -10.430 3.909 -10.630 -6.992 -8.649 -10.711 -10.644 -13.224 ML 58 56 3 61 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 3 61 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 3 61 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 18 G C - - MP 63 62 6 67 4 2 2 15 33 -13.710 -13.917 -0.000 -12.331 -12.447 -9.058 -14.839 -6.540 -14.066 -10.216 -8.358 -14.264 -10.428 3.997 -10.618 -6.993 -8.726 -10.685 -10.811 -13.968 ML 64 62 6 67 4 1 1 20 38 -4.430 -4.612 -0.297 -3.342 -0.278 -1.235 1.077 -0.642 MR 65 62 6 67 4 1 1 20 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 19 37 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 1 22 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - G - - - ML 69 68 6 71 3 1 1 11 30 -14.622 -0.000 -13.276 -9.162 -10.903 1.971 -3.703 D 70 68 6 71 3 0 0 16 34 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 72 71 3 74 3 1 1 9 28 -14.622 -0.000 -13.276 -11.811 -10.485 -13.313 2.000 D 73 71 3 74 3 0 0 14 33 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - C - - - ML 75 74 3 77 3 1 1 6 12 -4.804 -0.053 -13.276 -10.832 1.999 -11.520 -9.461 D 76 74 3 77 3 0 0 5 11 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 6 12 -4.672 -0.067 -7.372 0.000 0.000 0.000 0.000 [ MATL 16 ] 17 - G - - - ML 78 77 3 80 2 1 1 1 1 * 0.000 -9.153 -10.921 1.999 -9.909 D 79 77 3 80 2 0 0 0 0 * 0.000 IL 80 80 3 80 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 17 ] - - - - - - E 81 80 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME L25-Gammaproteobacteria ACC RF03131 DESC L25-Gammaproteobacteria ribosomal protein leader LENG 26 MAXL 70 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 1 10:35:31 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 381 EFFN 381.000000 CKSUM 1715434718 STATS LOCAL MSV -6.1410 0.73155 STATS LOCAL VITERBI -6.5849 0.73155 STATS LOCAL FORWARD -4.0589 0.73155 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 2.22398 1.30103 1.03777 1.32679 1.38629 1.38629 1.38629 1.38629 0.00568 8.25114 5.22133 1.46634 0.26236 0.00000 * 1 2.61295 0.25755 2.77236 2.39443 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.24599 8.24599 1.46634 0.26236 0.09226 2.42892 2 2.01360 0.41882 3.57185 1.71164 2 C - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 3 1.68961 2.38664 7.76899 0.32428 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 4 1.95217 8.12115 0.15384 8.01148 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 5 7.84315 0.81098 7.79986 0.58919 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 6 3.78960 2.06679 7.29392 0.16237 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 7 1.38047 8.12656 0.29062 7.71509 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 8 7.34516 0.02514 7.51958 3.74484 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.05704 2.89710 8.25114 0.00943 4.66844 1.09861 0.40547 9 9.57307 8.65419 10.61432 0.00027 10 U - - - 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 10 7.05035 2.81729 0.06285 8.17259 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 11 6.78049 7.77071 0.00204 7.63313 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 12 7.73672 8.94382 0.01996 3.95288 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 13 9.57307 8.65419 10.61432 0.00027 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 14 8.89464 0.00058 9.37143 7.94398 15 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03692 3.32472 8.25114 0.01444 4.24481 1.09861 0.40547 15 7.73060 8.95607 0.00083 8.25454 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00197 8.25114 6.37515 1.46634 0.26236 1.09861 0.40547 16 8.24965 0.00178 8.10034 6.71427 18 C - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.24970 8.24970 1.46634 0.26236 0.26728 1.45012 17 2.81795 0.06321 8.07337 6.71279 19 C - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 18 7.63924 7.41907 2.80384 0.06364 20 U - - - 1.38629 1.38629 1.38629 1.38629 0.00776 8.25114 4.89701 1.46634 0.26236 1.09861 0.40547 19 6.66189 7.90421 0.00215 7.60787 21 G - - > 1.38629 1.38629 1.38629 1.38629 0.00053 8.24391 8.24391 1.46634 0.26236 0.06755 2.72853 20 4.28717 2.03307 7.86114 0.15673 22 U - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 21 0.22100 4.43702 1.93318 3.17577 23 A - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 22 1.27712 7.86672 0.32814 7.56903 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 23 7.86084 0.19566 7.86597 1.73196 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 24 0.34564 7.71279 2.21638 1.69947 26 A - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 25 3.46582 3.57152 0.21461 2.01154 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.00052 8.25114 8.25114 1.46634 0.26236 1.09861 0.40547 26 2.43788 3.86325 0.26062 2.11133 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.00026 8.25088 * 1.46634 0.26236 0.00000 * //