INFERNAL1/a [1.1.4 | Dec 2020] NAME c4-a1b1 ACC RF03163 DESC a1, b1 targets of C4 antisense RNA STATES 168 NODES 48 CLEN 53 W 65 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 1 10:34:06 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 77 EFFN 77.000000 CKSUM 2594508007 NULL 0.000 0.000 0.000 0.000 GA 46.70 TC 46.70 NC 46.60 EFP7GF -17.4252 0.72525 ECMLC 0.64850 -8.63816 0.88782 1600000 578178 0.002075 ECMGC 0.40078 -22.32339 -8.69038 1600000 94395 0.004238 ECMLI 0.69227 -6.66129 1.89096 1600000 447110 0.002684 ECMGI 0.41507 -19.95924 -7.07957 1600000 83906 0.004767 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 65 83 -11.428 -11.635 -0.002 -10.049 IL 1 1 2 1 4 3 25 71 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 25 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 5 28 65 83 -12.342 -0.001 -10.996 -1.378 1.510 -2.488 -0.764 D 4 2 3 5 3 1 20 65 84 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 24 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 5 27 64 82 -12.342 -0.001 -10.996 -1.588 -2.276 -5.897 1.784 D 7 5 3 8 3 1 20 64 83 -6.174 -1.687 -0.566 IL 8 8 3 8 3 3 24 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 5 26 63 81 -12.342 -0.001 -10.996 1.819 -2.036 -3.116 -3.150 D 10 8 3 11 3 1 19 63 82 -6.174 -1.687 -0.566 IL 11 11 3 11 3 2 23 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 4 25 62 80 -12.342 -0.001 -10.996 -1.197 -1.004 0.829 0.366 D 13 11 3 14 3 1 19 62 81 -6.174 -1.687 -0.566 IL 14 14 3 14 3 2 23 66 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - u - - - ML 15 14 3 17 3 4 24 61 79 -12.342 -0.001 -10.996 0.149 -0.419 -0.983 0.712 D 16 14 3 17 3 1 18 61 80 -6.174 -1.687 -0.566 IL 17 17 3 17 3 2 22 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 4 23 60 78 -12.342 -0.001 -10.996 -4.713 1.281 -0.019 -0.875 D 19 17 3 20 3 1 18 60 79 -6.174 -1.687 -0.566 IL 20 20 3 20 3 2 21 64 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 4 22 59 77 -12.342 -0.001 -10.996 -5.198 -2.038 -3.351 1.860 D 22 20 3 23 3 0 17 59 78 -6.174 -1.687 -0.566 IL 23 23 3 23 3 2 21 63 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - c - - - ML 24 23 3 26 3 3 21 58 76 -12.342 -0.001 -10.996 -2.011 0.963 -0.508 0.137 D 25 23 3 26 3 0 17 58 77 -6.174 -1.687 -0.566 IL 26 26 3 26 3 2 20 62 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - c - - - ML 27 26 3 29 3 3 20 57 75 -12.342 -0.001 -10.996 -0.698 0.456 0.404 -0.538 D 28 26 3 29 3 0 16 57 76 -6.174 -1.687 -0.566 IL 29 29 3 29 3 2 19 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 3 19 56 74 -12.342 -0.001 -10.996 -1.175 -0.275 1.097 -0.759 D 31 29 3 32 3 0 16 56 75 -6.174 -1.687 -0.566 IL 32 32 3 32 3 2 19 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - C - - - ML 33 32 3 35 3 3 18 54 73 -12.342 -0.001 -10.996 -0.919 1.225 -1.282 -0.469 D 34 32 3 35 3 0 15 55 74 -6.174 -1.687 -0.566 IL 35 35 3 35 3 2 18 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 36 35 3 38 3 3 17 53 72 -12.342 -0.001 -10.996 -1.832 1.300 -0.300 -1.168 D 37 35 3 38 3 0 14 54 72 -6.174 -1.687 -0.566 IL 38 38 3 38 3 2 17 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - c - - - ML 39 38 3 41 3 3 16 52 71 -12.640 -0.001 -10.958 -1.587 0.757 0.320 -0.456 D 40 38 3 41 3 0 14 51 70 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 16 54 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 56 - u - - MR 42 41 3 44 3 2 15 51 70 -12.640 -0.001 -10.958 0.329 -0.786 -0.333 0.454 D 43 41 3 44 3 0 13 50 68 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 15 53 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - u - - MR 45 44 3 47 3 2 14 50 69 -12.640 -0.001 -10.958 -0.511 -0.467 -0.467 0.888 D 46 44 3 47 3 0 12 49 67 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 52 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 54 - a - - MR 48 47 3 50 3 2 13 49 68 -12.640 -0.001 -10.958 0.752 -0.912 -0.150 -0.180 D 49 47 3 50 3 0 11 48 67 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 51 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 53 - a - - MR 51 50 3 53 2 1 12 48 67 -12.987 -0.000 0.392 -0.814 0.199 -0.043 D 52 50 3 53 2 0 11 48 66 -4.432 -0.068 IR 53 53 3 53 2 1 12 50 68 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 18 ] - - - - - - B 54 53 3 55 117 0 11 47 66 [ BEGL 19 ] - - - - - - S 55 54 1 56 4 0 1 31 49 -0.004 -10.390 -9.798 -10.438 [ MATP 20 ] 14 34 G C - - MP 56 55 1 60 6 2 3 31 49 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -6.457 -5.071 -6.283 0.006 -7.412 -1.897 -2.475 -6.970 -2.417 3.136 -6.928 2.176 -1.650 -0.775 -4.485 -5.248 ML 57 55 1 60 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 1 60 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 1 60 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 15 33 U A - - MP 62 61 6 66 6 2 3 29 47 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -9.250 -9.526 -8.572 -5.757 -6.925 -8.719 1.925 -7.839 -8.674 -5.725 -8.796 -7.916 3.306 -9.087 1.164 -7.475 ML 63 61 6 66 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 32 C G - - MP 68 67 6 72 6 2 3 27 45 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -7.374 -7.135 -7.267 0.010 -6.021 -7.950 3.586 -6.734 -7.168 0.325 -7.609 -4.758 0.415 -7.509 -1.838 -5.901 ML 69 67 6 72 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 31 G C - - MP 74 73 6 78 6 2 3 25 43 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -6.389 -2.263 -6.211 0.259 -7.341 -6.797 0.799 -6.897 -6.634 3.523 -6.882 -0.434 -2.673 -6.063 -1.492 -5.175 ML 75 73 6 78 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 30 C G - - MP 80 79 6 84 6 2 3 23 41 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -9.253 -9.531 -8.573 -5.763 -6.925 -8.720 3.667 -7.840 -8.676 -5.732 -8.798 -7.925 1.412 -9.089 -0.823 -7.478 ML 81 79 6 84 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 29 U A - - MP 86 85 6 90 6 2 2 21 39 -12.299 -12.238 -0.026 -11.015 -11.294 -5.920 -7.651 -7.269 -7.533 1.145 -6.365 -8.257 0.723 -7.029 -7.424 1.110 -7.860 -4.845 3.294 -7.848 -3.899 -6.187 ML 87 85 6 90 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 28 G C - - MP 92 91 6 96 4 2 2 18 37 -11.403 -11.610 -0.002 -10.024 -9.831 -6.838 -11.117 -0.500 -11.628 -8.135 -6.110 -10.947 -8.180 3.900 -8.419 -1.672 -6.421 -8.546 -8.476 -9.874 ML 93 91 6 96 4 1 1 22 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 95 91 6 96 4 0 0 20 38 -6.310 -5.991 -0.390 -2.261 IL 96 96 5 96 4 1 1 24 42 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - C - - - ML 98 97 6 100 3 1 1 15 34 -12.342 -0.001 -10.996 -1.710 1.628 -3.739 -0.921 D 99 97 6 100 3 0 0 18 36 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - a - - - ML 101 100 3 103 3 1 1 14 33 -12.342 -0.001 -10.996 0.958 0.538 -2.022 -1.475 D 102 100 3 103 3 0 0 17 35 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - A - - - ML 104 103 3 106 3 1 1 13 31 -12.342 -0.042 -5.140 1.490 -0.957 -2.215 -1.118 D 105 103 3 106 3 0 0 15 34 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 24 - A - - - ML 107 106 3 109 3 1 1 11 30 -12.302 -0.278 -2.515 1.771 -3.512 -2.087 -1.923 D 108 106 3 109 3 0 0 13 31 -8.843 -0.166 -3.234 IL 109 109 3 109 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - A - - - ML 110 109 3 112 3 1 1 8 16 -3.759 -0.112 -10.728 1.290 -2.050 -4.814 0.353 D 111 109 3 112 3 0 0 5 13 -11.245 -0.030 -5.637 IL 112 112 3 112 3 1 1 8 16 -3.424 -0.164 -6.124 0.000 0.000 0.000 0.000 [ MATL 32 ] 27 - U - - - ML 113 112 3 115 2 1 1 1 1 * 0.000 -5.186 -1.339 -3.242 1.796 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 34 ] - - - - - - S 117 54 1 118 5 0 0 26 45 -3.840 -0.106 -11.101 -11.313 -12.204 IL 118 118 2 118 5 1 1 27 46 -4.597 -0.095 -6.276 -8.109 -7.382 0.000 0.000 0.000 0.000 [ MATP 35 ] 36 52 C G - - MP 119 118 2 123 6 2 2 26 45 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -9.081 -9.073 -8.507 -1.259 -6.953 -8.752 3.840 -7.817 -8.562 -0.458 -8.739 -7.057 -1.148 -9.032 -4.643 -7.374 ML 120 118 2 123 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 2 123 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 2 123 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 37 51 G C - - MP 125 124 6 129 6 2 2 24 43 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -8.974 -6.830 -9.423 0.666 -10.953 -8.671 -5.896 -9.483 -8.096 3.592 -8.481 1.194 -6.068 -8.778 -8.021 -8.090 ML 126 124 6 129 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 38 50 G C - - MP 131 130 6 135 6 2 2 22 41 -12.299 -12.238 -0.002 -11.015 -11.294 -11.689 -10.157 -6.862 -12.170 -4.306 -11.826 -8.050 -6.160 -11.753 -8.226 3.961 -8.427 -1.643 -6.514 -8.507 -8.594 -11.121 ML 132 130 6 135 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 39 49 G C - - MP 137 136 6 141 4 2 2 20 39 -11.428 -3.356 -0.150 -10.049 -6.422 -5.136 -6.253 0.134 -6.944 -6.862 1.486 -6.786 -6.630 3.372 -6.904 -2.773 0.200 -2.716 -2.491 -5.182 ML 138 136 6 141 4 1 1 22 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 140 136 6 141 4 0 0 20 38 -4.568 -4.250 -2.265 -0.520 IL 141 141 5 141 4 1 1 23 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 142 142 6 142 3 1 1 19 38 -3.949 -0.112 -6.649 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - - - ML 143 142 6 145 3 1 1 18 36 -12.342 -0.001 -10.996 -0.715 -0.603 -5.565 1.439 D 144 142 6 145 3 0 0 20 38 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - U - - - ML 146 145 3 148 3 1 1 17 35 -12.342 -0.001 -10.996 -5.155 -1.971 -0.335 1.548 D 147 145 3 148 3 0 0 19 37 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - U - - - ML 149 148 3 151 3 1 1 16 34 -12.342 -0.001 -10.996 -8.800 -7.849 -9.925 1.997 D 150 148 3 151 3 0 0 18 36 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - G - - - ML 152 151 3 154 3 1 1 14 33 -12.342 -0.001 -10.996 -0.350 -3.066 1.617 -5.122 D 153 151 3 154 3 0 0 17 35 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 44 - G - - - ML 155 154 3 157 3 1 1 13 32 -12.342 -0.001 -10.996 0.526 -3.050 1.203 -2.874 D 156 154 3 157 3 0 0 16 34 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - C - - - ML 158 157 3 160 3 1 1 12 30 -12.342 -0.001 -10.996 -1.184 1.284 -1.251 -0.506 D 159 157 3 160 3 0 0 15 33 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - A - - - ML 161 160 3 163 3 1 1 10 28 -12.342 -0.001 -10.996 1.548 -3.414 -0.045 -6.258 D 162 160 3 163 3 0 0 13 32 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - G - - - ML 164 163 3 166 2 1 1 1 1 * 0.000 0.221 -3.069 1.173 -1.118 D 165 163 3 166 2 0 0 0 0 * 0.000 IL 166 166 3 166 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 167 166 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME c4-a1b1 ACC RF03163 DESC a1, b1 targets of C4 antisense RNA LENG 53 MAXL 107 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 1 10:34:06 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 77 EFFN 77.000000 CKSUM 2594508007 STATS LOCAL MSV -7.5798 0.72525 STATS LOCAL VITERBI -8.1375 0.72525 STATS LOCAL FORWARD -3.8589 0.72525 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.65811 1.22911 1.27021 1.44317 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 0.00000 * 1 2.34111 0.33961 3.11078 1.91620 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 2 2.48673 2.96400 5.47410 0.14965 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 3 0.12552 2.79762 3.54615 3.56940 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 4 2.21630 2.08210 0.81148 1.13283 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 5 1.28327 1.67681 2.06781 0.89297 5 u - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 6 4.65299 0.49855 1.39935 1.99292 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 7 4.98897 2.79864 3.70888 0.09674 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 8 2.78032 0.71877 1.73852 1.29154 8 c - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 9 1.87015 1.07000 1.10638 1.75947 9 c - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 10 2.20060 1.57690 0.62563 1.91243 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 11 2.02327 0.53722 2.27489 1.71149 11 C - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 12 2.65592 0.48535 1.59448 2.19582 12 C - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 13 2.48610 0.86171 1.16439 1.70256 13 c - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 14 2.71290 3.54018 0.17005 2.79651 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 15 6.31597 1.43453 6.24673 0.27703 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 16 2.74241 0.28536 2.50721 2.27938 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 17 2.41185 2.20427 0.26777 3.35420 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 18 6.28043 0.23071 6.22622 1.59860 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 19 1.96953 2.25683 1.98203 0.48126 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.01998 6.67456 3.98911 1.46634 0.26236 1.09861 0.40547 20 3.09701 6.56206 0.04926 6.52521 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.00257 6.65716 6.65716 1.46634 0.26236 0.12785 2.12015 21 2.57148 0.25770 3.97787 2.02475 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 22 0.72242 1.01345 2.78781 2.40901 22 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 23 0.35355 2.04969 2.92133 2.16130 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03074 6.67456 3.54006 1.46634 0.26236 1.09861 0.40547 24 0.15862 3.82042 2.83319 2.71902 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.19394 6.64642 1.74301 1.46634 0.26236 0.08346 2.52482 25 0.49203 2.80746 4.72311 1.14140 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.07934 2.59351 6.48959 0.04016 3.23493 0.01473 4.22500 26 4.98129 2.31452 3.63336 0.14169 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01998 6.67456 3.98911 1.46634 0.26236 1.09861 0.40547 27 6.55390 0.06949 6.46557 2.74651 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.00257 6.65716 6.65716 1.46634 0.26236 0.12785 2.12015 28 0.48744 1.99635 2.22504 1.95256 29 A - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 29 1.78822 6.35264 0.18794 6.05899 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 30 4.43008 0.31173 2.02152 2.09191 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 31 2.46101 2.53260 0.26382 2.70182 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 32 0.48064 6.35405 0.97407 6.06121 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 33 3.41047 0.50409 4.16175 1.05745 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.07490 2.64648 6.67456 0.03524 3.36303 1.09861 0.40547 34 3.61447 0.11092 3.06773 3.45676 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 35 2.30020 6.46398 0.10945 6.27950 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 36 5.48582 6.59160 0.00690 6.59922 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 37 2.62849 1.73361 0.42037 2.36057 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 38 1.88193 1.80411 5.24393 0.38890 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 39 4.95959 2.75281 1.61854 0.31328 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 40 7.48633 6.82688 8.26572 0.00190 42 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 41 1.62901 3.51172 0.26546 4.93668 43 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 42 1.02149 3.50051 0.55226 3.37807 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 43 2.20724 0.49610 2.25354 1.73690 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 44 0.31348 3.75250 1.41725 5.72414 46 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 45 1.23299 3.51335 0.57345 2.16106 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.10442 2.32387 6.67456 0.02560 3.67797 1.09861 0.40547 46 2.60453 0.41801 1.67393 2.52329 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 47 6.66424 0.02652 6.54181 3.75271 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 48 6.44529 0.28212 6.35364 1.41680 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 49 3.53416 3.07954 0.10821 3.59738 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 50 1.11431 1.95064 1.24842 1.41586 53 a - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 51 0.86496 2.01828 1.48993 1.51114 54 a - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 52 1.74022 1.70986 1.70974 0.77065 55 u - - : 1.38629 1.38629 1.38629 1.38629 0.00253 6.67456 6.67456 1.46634 0.26236 1.09861 0.40547 53 1.15826 1.93108 1.61695 1.07156 56 u - - : 1.38629 1.38629 1.38629 1.38629 0.00127 6.67330 * 1.46634 0.26236 0.00000 * //