INFERNAL1/a [1.1.4 | Dec 2020] NAME c-di-GMP-II-GAG ACC RF03169 DESC c-di-GMP-II-GAG riboswitch STATES 268 NODES 68 CLEN 88 W 315 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 1 10:39:29 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 472 EFFN 6.211853 CKSUM 2893079519 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 39.80 EFP7GF -14.7212 0.71852 ECMLC 0.62553 -5.13138 3.01797 1600000 196368 0.006111 ECMGC 0.37238 -17.01699 -3.27150 1600000 66841 0.005984 ECMLI 0.61664 -3.82365 4.11729 1600000 160621 0.007471 ECMGI 0.38996 -12.35504 -0.28665 1600000 44254 0.009039 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 315 576 -9.657 -9.597 -0.098 -4.582 -6.836 -6.301 IL 1 1 2 1 6 1 33 317 578 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 33 317 578 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 201 c g - - MP 3 2 3 7 6 2 39 316 577 -9.575 -9.514 -0.015 -8.290 -8.570 -8.965 -1.144 -1.412 -0.804 1.072 -0.614 -1.578 1.477 -1.592 -1.046 1.163 -1.445 -0.203 1.330 -1.739 0.099 -0.867 ML 4 2 3 7 6 1 31 313 574 -7.061 -7.407 -1.228 -0.952 -7.257 -4.786 0.170 -0.124 -0.415 0.271 MR 5 2 3 7 6 1 30 313 574 -7.133 -5.862 -1.617 -5.840 -0.806 -4.054 0.291 -0.211 -0.236 0.089 D 6 2 3 7 6 0 24 307 568 -9.391 -8.089 -3.301 -4.140 -3.342 -0.438 IL 7 7 5 7 6 1 32 315 576 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 33 315 576 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 200 c g - - MP 9 8 6 13 6 2 38 314 575 -9.607 -9.547 -0.015 -8.323 -8.603 -8.998 -1.226 -1.479 -0.829 1.078 -0.916 -1.122 1.532 -1.587 -1.209 1.061 -0.705 -0.035 1.180 -1.573 0.173 -1.035 ML 10 8 6 13 6 1 30 311 572 -6.759 -7.105 -1.095 -1.112 -6.955 -4.485 0.193 -0.184 -0.308 0.225 MR 11 8 6 13 6 1 30 311 572 -7.150 -5.879 -1.360 -5.857 -0.972 -4.070 0.244 -0.037 -0.404 0.118 D 12 8 6 13 6 0 23 305 566 -9.230 -7.929 -3.726 -4.408 -4.425 -0.278 IL 13 13 5 13 6 1 32 313 574 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 32 313 574 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 199 c g - - MP 15 14 6 19 6 2 37 312 573 -9.637 -9.576 -0.015 -8.353 -8.633 -9.028 -0.904 -1.061 -1.253 1.101 -1.384 -1.536 1.542 -1.445 -1.124 1.158 -1.078 0.191 1.204 -1.622 -0.007 -1.039 ML 16 14 6 19 6 1 29 309 570 -6.465 -6.811 -1.179 -1.078 -6.661 -4.190 0.484 -0.427 -0.203 -0.016 MR 17 14 6 19 6 1 29 309 570 -6.998 -5.727 -1.636 -5.705 -0.821 -3.919 0.350 -0.380 -0.211 0.128 D 18 14 6 19 6 0 23 303 564 -9.230 -7.929 -3.547 -4.408 -4.425 -0.295 IL 19 19 5 19 6 1 31 311 572 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 32 311 572 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 198 c g - - MP 21 20 6 25 6 2 36 310 571 -9.646 -9.585 -0.016 -8.225 -8.147 -9.036 -0.889 -1.505 -1.058 1.090 -1.181 -1.140 1.722 -1.815 -1.188 1.055 -1.703 -0.385 1.288 -1.344 0.093 -0.915 ML 22 20 6 25 6 1 29 307 568 -6.322 -6.668 -1.210 -1.077 -6.518 -4.047 0.362 -0.484 0.046 -0.048 MR 23 20 6 25 6 1 28 307 568 -6.998 -5.727 -1.604 -5.705 -0.839 -3.919 0.413 -0.417 -0.185 0.056 D 24 20 6 25 6 0 22 302 563 -9.216 -7.914 -2.701 -4.393 -4.411 -0.423 IL 25 25 5 25 6 1 30 309 570 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 31 309 570 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 197 c g - - MP 27 26 6 31 6 2 35 308 569 -9.653 -6.241 -0.079 -4.860 -8.488 -9.044 -1.074 -0.636 -0.907 1.093 -1.161 -1.138 1.524 -1.851 -1.368 1.294 -1.561 -0.414 1.193 -1.344 0.091 -1.041 ML 28 26 6 31 6 1 28 306 567 -6.258 -6.605 -1.298 -1.013 -6.454 -3.984 0.356 -0.381 -0.205 0.118 MR 29 26 6 31 6 1 27 305 566 -7.012 -5.741 -1.575 -5.719 -0.853 -3.933 0.327 -0.374 -0.237 0.171 D 30 26 6 31 6 0 22 300 561 -9.100 -7.798 -3.595 -4.277 -4.294 -0.307 IL 31 31 5 31 6 1 30 307 568 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 31 307 568 -2.551 -0.442 -6.062 -4.230 -5.336 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 195 c g - - MP 33 32 6 37 6 2 34 306 567 -9.609 -5.899 -0.049 -6.855 -7.802 -9.000 -0.465 -0.969 -0.635 1.122 -1.243 -1.871 1.451 -1.854 -1.484 1.371 -1.340 -0.353 1.177 -1.959 0.118 -0.964 ML 34 32 6 37 6 1 28 304 565 -6.937 -7.283 -0.987 -1.203 -7.133 -4.662 0.278 -0.106 -0.510 0.209 MR 35 32 6 37 6 1 27 303 564 -6.995 -5.724 -1.633 -5.702 -0.823 -3.916 0.400 -0.408 -0.186 0.067 D 36 32 6 37 6 0 21 298 559 -9.100 -7.798 -3.493 -4.277 -4.294 -0.318 IL 37 37 5 37 6 1 29 305 566 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 30 305 566 -2.585 -0.430 -6.096 -4.264 -5.370 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 193 c g - - MP 39 38 6 43 6 2 32 304 565 -9.630 -9.569 -0.017 -8.346 -7.907 -9.020 -1.173 -1.053 -1.321 1.315 -1.708 -2.464 1.623 -1.807 -1.327 1.433 -2.075 -0.255 1.222 -1.636 -0.033 -0.924 ML 40 38 6 43 6 1 27 302 563 -6.634 -6.980 -0.923 -1.332 -6.830 -4.359 0.291 -0.225 -0.374 0.200 MR 41 38 6 43 6 1 26 301 562 -7.039 -5.768 -1.555 -5.746 -0.860 -3.960 0.288 -0.206 -0.333 0.161 D 42 38 6 43 6 0 21 297 558 -9.091 -7.789 -3.488 -4.268 -4.286 -0.320 IL 43 43 5 43 6 1 28 303 564 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 29 303 564 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 192 c g - - MP 45 44 6 49 6 2 31 302 563 -9.652 -9.591 -0.017 -7.742 -8.647 -9.042 -1.323 -1.857 -0.888 1.334 -1.651 -2.448 1.921 -2.015 -1.863 1.293 -2.063 -0.471 1.211 -2.012 0.007 -1.082 ML 46 44 6 49 6 1 26 300 561 -6.278 -6.624 -1.270 -1.033 -6.474 -4.004 0.389 -0.432 -0.077 0.002 MR 47 44 6 49 6 1 25 299 560 -7.037 -5.766 -1.527 -5.744 -0.878 -3.958 0.476 -0.463 -0.215 0.032 D 48 44 6 49 6 0 20 295 556 -9.082 -7.781 -3.229 -4.260 -4.277 -0.353 IL 49 49 5 49 6 1 27 301 562 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 28 301 562 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 191 g c - - MP 51 50 6 55 6 2 29 300 561 -9.655 -9.594 -0.014 -8.371 -8.651 -9.046 -2.067 -1.901 -2.237 1.138 -1.996 -2.034 1.406 -2.555 -1.881 2.290 -2.787 -0.249 1.197 -2.189 -0.424 -1.474 ML 52 50 6 55 6 1 25 298 559 -6.295 -6.641 -1.246 -1.050 -6.491 -4.021 0.366 -0.401 -0.116 0.045 MR 53 50 6 55 6 1 23 298 559 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 20 294 555 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 26 299 560 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 26 299 560 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 190 G C - - MP 57 56 6 61 6 2 27 298 559 -9.657 -9.597 -0.019 -8.036 -7.705 -9.048 -3.664 -2.523 -3.689 1.323 -4.225 -3.728 0.735 -4.266 -4.040 3.098 -4.355 -0.129 0.121 -3.594 -1.783 -1.850 ML 58 56 6 61 6 1 24 296 557 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 22 296 557 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 19 294 554 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 25 297 558 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 25 297 558 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 189 G C - - MP 63 62 6 67 4 2 25 296 557 -6.676 -6.784 -0.053 -5.855 -3.486 -2.045 -3.802 1.141 -4.765 -4.410 0.104 -4.445 -3.067 3.285 -4.089 -0.238 -0.110 -3.507 -1.972 -2.782 ML 64 62 6 67 4 1 23 295 556 -3.775 -3.957 -0.500 -2.686 0.444 -0.438 -0.186 0.032 MR 65 62 6 67 4 1 20 294 555 -4.873 -3.902 -1.630 -0.796 0.339 -0.222 -0.318 0.106 D 66 62 6 67 4 0 19 293 554 -4.568 -4.250 -2.265 -0.520 IL 67 67 5 67 4 1 24 296 557 -1.768 -2.452 -1.026 -4.937 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 24 296 557 -1.482 -0.769 -4.182 0.000 0.000 0.000 0.000 [ MATL 12 ] 13 - A - - - ML 69 68 6 71 3 1 23 294 555 -9.382 -0.010 -7.552 1.465 -1.802 -0.699 -1.573 D 70 68 6 71 3 0 18 292 553 -5.762 -0.647 -1.545 IL 71 71 3 71 3 1 22 294 555 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 187 - a - - MR 72 71 3 74 3 1 22 293 554 -9.393 -0.009 -7.711 0.779 -1.378 0.538 -1.159 D 73 71 3 74 3 0 16 290 551 -6.403 -1.543 -0.632 IR 74 74 3 74 3 1 21 293 554 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 186 - G - - MR 75 74 3 77 3 1 22 292 553 -9.394 -0.009 -7.712 -3.555 -4.998 1.938 -4.295 D 76 74 3 77 3 0 15 289 550 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 20 292 553 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 185 - C - - MR 78 77 3 80 3 1 21 291 552 -9.394 -0.009 -7.712 -3.558 1.891 -3.947 -2.830 D 79 77 3 80 3 0 14 288 549 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 19 291 552 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 184 - C - - MR 81 80 3 83 3 1 20 290 551 -9.394 -0.009 -7.712 -3.962 1.912 -4.640 -2.921 D 82 80 3 83 3 0 14 287 548 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 18 290 551 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 183 - A - - MR 84 83 3 86 3 1 19 289 550 -9.394 -0.009 -7.712 1.938 -4.436 -3.907 -4.153 D 85 83 3 86 3 0 13 287 547 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 17 289 550 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 182 - G - - MR 87 86 3 89 3 1 18 288 549 -9.394 -0.009 -7.712 -3.555 -4.998 1.938 -4.295 D 88 86 3 89 3 0 12 286 546 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 17 288 549 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 181 - A - - MR 90 89 3 92 3 1 18 287 548 -9.394 -0.009 -7.712 1.544 -0.877 -2.024 -1.769 D 91 89 3 92 3 0 11 285 546 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 16 287 548 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 180 - G - - MR 93 92 3 95 3 1 17 286 547 -9.394 -0.009 -7.712 -3.176 -4.813 1.925 -4.147 D 94 92 3 95 3 0 10 284 545 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 15 286 547 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 179 - C - - MR 96 95 3 98 3 1 16 285 546 -9.394 -0.009 -7.712 -2.121 1.396 -3.074 0.028 D 97 95 3 98 3 0 9 283 544 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 15 285 546 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 178 - G - - MR 99 98 3 101 3 1 15 284 545 -9.394 -0.009 -7.712 -2.549 -4.104 1.882 -3.570 D 100 98 3 101 3 0 9 282 543 -6.390 -1.568 -0.620 IR 101 101 3 101 3 1 14 284 545 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 177 - G - - MR 102 101 3 104 3 1 15 283 544 -9.394 -0.009 -7.712 -1.833 -3.438 1.809 -3.012 D 103 101 3 104 3 0 8 281 542 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 13 283 544 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 176 - U - - MR 105 104 3 107 3 1 14 282 543 -9.394 -0.009 -7.712 -1.981 -1.856 -2.740 1.731 D 106 104 3 107 3 0 7 280 541 -6.390 -1.568 -0.620 IR 107 107 3 107 3 1 12 282 543 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 175 - g - - MR 108 107 3 110 3 1 13 281 542 -9.394 -0.009 -7.712 -0.116 -0.653 0.974 -1.068 D 109 107 3 110 3 0 6 279 540 -6.390 -1.568 -0.620 IR 110 110 3 110 3 1 11 281 542 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 174 - A - - MR 111 110 3 113 5 1 12 280 541 -6.322 -0.035 -7.661 -8.111 -8.432 1.908 -3.873 -3.346 -3.657 D 112 110 3 113 5 0 5 278 539 -5.352 -0.707 -2.978 -4.409 -2.404 IR 113 113 3 113 5 1 9 280 541 -2.478 -0.469 -5.989 -4.156 -5.262 0.000 0.000 0.000 0.000 [ MATP 27 ] 14 172 g c - - MP 114 113 3 118 6 2 12 279 540 -9.656 -9.595 -0.014 -8.372 -8.651 -9.046 -1.486 -1.045 -1.142 1.061 -1.814 -2.108 1.711 -2.272 -1.875 1.786 -2.261 -0.498 1.221 -1.951 -0.066 -1.185 ML 115 113 3 118 6 1 7 277 538 -6.263 -6.610 -1.291 -1.018 -6.459 -3.989 0.418 -0.420 -0.185 0.053 MR 116 113 3 118 6 1 6 277 538 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 3 118 6 0 2 273 534 -9.070 -7.769 -3.334 -4.248 -4.265 -0.341 IL 118 118 5 118 6 1 8 278 539 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 8 278 539 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 15 171 G C - - MP 120 119 6 124 6 2 10 277 538 -9.657 -9.597 -0.014 -8.373 -8.653 -9.048 -4.160 -2.642 -4.011 1.089 -5.021 -4.097 0.035 -4.665 -4.009 3.365 -4.610 -0.308 -0.440 -2.847 -2.171 -2.983 ML 121 119 6 124 6 1 6 275 536 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 5 275 536 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 2 272 533 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 7 276 537 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 7 276 537 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 16 170 C G - - MP 126 125 6 130 4 2 9 275 536 -5.023 -8.303 -0.072 -6.075 -5.762 -5.888 -5.214 -2.024 -3.652 -5.447 3.712 -4.544 -5.290 -1.922 -5.458 -4.000 -0.256 -5.681 0.206 -4.086 ML 127 125 6 130 4 1 5 274 535 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 4 1 3 273 534 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 129 125 6 130 4 0 2 272 533 -4.568 -4.250 -2.265 -0.520 IL 130 130 5 130 4 1 7 275 536 -2.022 -2.030 -1.054 -5.191 0.000 0.000 0.000 0.000 IR 131 131 6 131 3 1 7 275 536 -1.428 -0.794 -4.274 0.000 0.000 0.000 0.000 [ MATL 30 ] 18 - a - - - ML 132 131 6 134 3 1 7 273 534 -9.047 -0.018 -6.597 0.290 -0.860 0.175 0.134 D 133 131 6 134 3 0 1 271 532 -6.313 -1.620 -0.595 IL 134 134 3 134 3 1 6 274 535 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - a - - - ML 135 134 3 137 3 1 7 272 533 -9.043 -0.010 -7.697 0.424 -0.295 -0.565 0.224 D 136 134 3 137 3 0 1 270 531 -6.390 -1.539 -0.635 IL 137 137 3 137 3 1 5 273 534 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - u - - - ML 138 137 3 140 3 1 6 271 532 -9.049 -0.011 -7.379 0.064 -0.211 -0.855 0.621 D 139 137 3 140 3 0 0 269 530 -6.275 -1.788 -0.520 IL 140 140 3 140 3 1 4 272 533 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 21 - G - - - ML 141 140 3 143 3 1 5 270 531 -9.048 -0.010 -7.702 -2.163 -2.540 1.787 -2.699 D 142 140 3 143 3 0 0 268 529 -6.307 -1.517 -0.648 IL 143 143 3 143 3 1 4 271 532 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - A - - - ML 144 143 3 146 3 1 4 269 530 -9.053 -0.013 -7.145 1.816 -2.640 -2.509 -2.800 D 145 143 3 146 3 0 0 267 528 -6.208 -1.721 -0.550 IL 146 146 3 146 3 1 3 270 531 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - u - - - ML 147 146 3 149 3 1 3 268 529 -5.621 -0.051 -6.134 -0.100 0.086 -1.443 0.711 D 148 146 3 149 3 0 0 266 527 -5.679 -0.696 -1.462 IL 149 149 3 149 3 1 2 268 529 -2.096 -0.481 -4.335 0.000 0.000 0.000 0.000 [ MATR 36 ] - 167 - A - - MR 150 149 3 152 3 1 3 267 528 -9.380 -0.009 -7.698 1.826 -3.238 -2.274 -2.815 D 151 149 3 152 3 0 0 265 526 -6.606 -1.530 -0.636 IR 152 152 3 152 3 1 2 268 528 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 37 ] - 166 - G - - MR 153 152 3 155 3 1 2 266 527 -9.386 -0.013 -7.122 -2.169 -3.418 1.811 -2.514 D 154 152 3 155 3 0 0 264 525 -6.523 -1.338 -0.753 IR 155 155 3 155 3 1 1 267 527 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 38 ] - 165 - g - - MR 156 155 3 158 5 1 2 265 526 -6.510 -0.034 -7.895 -8.107 -7.699 -0.841 -0.302 0.983 -0.611 D 157 155 3 158 5 0 0 262 523 -5.384 -0.687 -3.011 -4.442 -2.436 IR 158 158 3 158 5 1 1 265 526 -2.466 -0.473 -5.977 -4.145 -5.250 0.000 0.000 0.000 0.000 [ MATP 39 ] 25 163 c g - - MP 159 158 3 163 6 2 4 264 525 -7.855 -9.594 -0.022 -8.371 -7.722 -9.045 -1.749 -0.919 -2.070 0.959 -1.453 -2.433 2.301 -2.226 -2.176 1.367 -2.672 -0.451 1.107 -2.228 -0.230 -1.355 ML 160 158 3 163 6 1 1 261 522 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 6 1 1 261 522 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 162 158 3 163 6 0 0 254 515 -9.113 -7.811 -2.997 -4.290 -4.307 -0.383 IL 163 163 5 163 6 1 1 263 524 -2.642 -2.905 -0.718 -4.560 -5.336 -4.996 0.000 0.000 0.000 0.000 IR 164 164 6 164 5 1 1 263 524 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 27 162 C G - - MP 165 164 6 169 6 2 3 262 523 -9.654 -9.593 -0.014 -8.370 -8.650 -9.045 -3.281 -3.314 -3.846 0.230 -2.684 -4.665 3.169 -3.052 -3.789 0.457 -4.094 -1.523 1.271 -4.023 -0.400 -2.653 ML 166 164 6 169 6 1 1 259 520 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 6 169 6 1 1 259 520 -7.041 -5.770 -1.519 -5.748 -0.882 -3.962 0.354 -0.399 -0.258 0.173 D 168 164 6 169 6 0 0 251 512 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 261 522 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 261 522 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 28 161 g c - - MP 171 170 6 175 6 2 3 260 521 -9.657 -6.001 -0.040 -7.340 -8.653 -9.048 -2.874 -2.570 -2.891 0.917 -2.603 -3.655 1.649 -2.835 -3.071 2.405 -3.290 -0.576 1.533 -2.994 -0.518 -2.026 ML 172 170 6 175 6 1 1 257 518 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 256 517 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 248 509 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 259 520 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 259 520 -2.334 -0.507 -5.371 -4.312 -5.418 0.000 0.000 0.000 0.000 [ MATP 42 ] 29 158 c g - - MP 177 176 6 181 6 2 3 258 519 -6.184 -9.590 -0.033 -8.367 -8.647 -9.042 -2.276 -2.425 -1.525 0.814 -1.802 -2.889 2.586 -2.529 -2.352 1.027 -2.863 -0.815 1.307 -2.597 -0.003 -1.624 ML 178 176 6 181 6 1 1 255 516 -4.009 -6.717 -1.318 -1.126 -6.567 -4.097 0.416 -0.569 0.082 -0.099 MR 179 176 6 181 6 1 1 254 515 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 180 176 6 181 6 0 0 246 506 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 181 181 5 181 6 1 1 257 518 -2.865 -3.128 -0.591 -4.783 -5.559 -5.220 0.000 0.000 0.000 0.000 IR 182 182 6 182 5 1 1 257 518 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 31 157 G C - - MP 183 182 6 187 6 2 2 257 517 -5.992 -9.597 -0.039 -8.373 -7.882 -8.674 -3.656 -2.518 -3.585 1.292 -3.112 -4.251 0.830 -4.107 -3.892 3.042 -3.323 0.121 0.134 -3.453 -1.490 -2.514 ML 184 182 6 187 6 1 1 253 513 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 185 182 6 187 6 1 1 251 512 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 186 182 6 187 6 0 0 242 503 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 187 187 5 187 6 1 1 255 516 -2.271 -2.632 -0.854 -4.890 -5.666 -5.326 0.000 0.000 0.000 0.000 IR 188 188 6 188 5 1 1 255 516 -2.470 -0.472 -5.982 -4.149 -5.255 0.000 0.000 0.000 0.000 [ MATP 44 ] 34 155 g c - - MP 189 188 6 193 6 2 2 255 516 -9.654 -9.593 -0.018 -8.370 -7.660 -9.045 -1.791 -1.855 -1.992 1.116 -1.779 -2.756 1.612 -2.397 -1.833 1.877 -2.603 0.133 1.245 -2.241 0.190 -1.357 ML 190 188 6 193 6 1 1 250 511 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 191 188 6 193 6 1 1 248 508 -7.030 -5.759 -1.668 -5.737 -0.797 -3.951 0.384 -0.508 0.042 -0.056 D 192 188 6 193 6 0 0 238 499 -9.069 -7.767 -3.348 -4.246 -4.264 -0.339 IL 193 193 5 193 6 1 1 253 514 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 194 194 6 194 5 1 1 253 514 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 35 154 g c - - MP 195 194 6 199 6 2 2 253 514 -5.321 -9.591 -0.054 -7.732 -8.647 -8.421 -1.624 -1.565 -1.429 1.141 -0.870 -2.684 1.651 -2.287 -1.798 1.681 -2.358 -0.510 1.420 -2.048 -0.033 -1.226 ML 196 194 6 199 6 1 1 246 507 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 197 194 6 199 6 1 1 243 503 -5.116 -5.816 -1.724 -3.990 -0.928 -4.007 0.305 -0.246 -0.190 0.062 D 198 194 6 199 6 0 0 233 493 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 199 199 5 199 6 1 1 251 512 -2.305 -2.103 -1.081 -4.242 -5.854 -5.514 0.000 0.000 0.000 0.000 IR 200 200 6 200 5 1 1 251 512 -2.580 -0.467 -4.932 -4.259 -5.365 0.000 0.000 0.000 0.000 [ MATP 46 ] 38 152 c g - - MP 201 200 6 205 4 2 2 251 512 -8.070 -1.699 -0.559 -6.691 -2.502 -2.813 -2.992 0.765 -2.369 -3.539 2.424 -3.113 -3.028 1.862 -3.345 -0.481 1.169 -3.122 -0.123 -2.045 ML 202 200 6 205 4 1 1 240 500 -3.940 -3.015 -0.572 -2.852 0.270 -0.118 -0.314 0.096 MR 203 200 6 205 4 1 1 232 492 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 204 200 6 205 4 0 0 228 488 -4.602 -4.283 -2.299 -0.506 IL 205 205 5 205 4 1 1 249 510 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 206 206 6 206 3 1 1 265 526 -0.102 -3.919 -8.771 0.000 0.000 0.000 0.000 [ MATL 47 ] 39 - c - - - ML 207 206 6 209 3 1 1 209 442 -9.048 -0.061 -4.655 -0.395 0.550 -0.943 0.327 D 208 206 6 209 3 0 0 205 437 -6.296 -1.809 -0.511 IL 209 209 3 209 3 1 1 210 442 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 40 - c - - - ML 210 209 3 212 3 1 1 209 441 -8.997 -0.032 -5.652 -0.052 0.213 0.105 -0.321 D 211 209 3 212 3 0 0 203 435 -7.000 -0.956 -1.069 IL 212 212 3 212 3 1 1 209 441 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 41 - c - - - ML 213 212 3 215 3 1 1 208 440 -9.021 -0.596 -1.572 -0.416 0.787 -1.486 0.225 D 214 212 3 215 3 0 0 193 425 -6.712 -2.225 -0.365 IL 215 215 3 215 3 1 1 212 445 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 42 - a - - - ML 216 215 3 218 3 1 1 212 444 -0.928 -1.098 -7.094 0.337 -0.182 -0.587 0.250 D 217 215 3 218 3 0 0 139 371 -9.143 -0.759 -1.295 IL 218 218 3 218 3 1 1 219 451 -0.114 -3.760 -8.674 0.000 0.000 0.000 0.000 [ MATL 51 ] 91 - a - - - ML 219 218 3 221 3 1 1 29 48 -8.851 -0.011 -7.506 0.713 -0.531 -0.402 -0.133 D 220 218 3 221 3 0 0 28 47 -8.016 -0.312 -2.391 IL 221 221 3 221 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 92 - a - - - ML 222 221 3 224 3 1 1 28 47 -9.054 -0.010 -7.708 0.645 -0.151 -0.548 -0.231 D 223 221 3 224 3 0 0 27 46 -6.186 -1.699 -0.560 IL 224 224 3 224 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 93 - c - - - ML 225 224 3 227 3 1 1 27 46 -9.054 -0.010 -7.708 -0.007 0.236 -0.500 0.164 D 226 224 3 227 3 0 0 26 45 -6.186 -1.699 -0.560 IL 227 227 3 227 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 94 - a - - - ML 228 227 3 230 3 1 1 26 44 -9.054 -0.010 -7.708 0.600 -0.246 -0.723 0.049 D 229 227 3 230 3 0 0 25 44 -6.186 -1.662 -0.577 IL 230 230 3 230 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 95 - C - - - ML 231 230 3 233 3 1 1 25 43 -9.055 -0.010 -7.709 -2.288 1.675 -2.813 -1.125 D 232 230 3 233 3 0 0 24 43 -6.174 -1.687 -0.566 IL 233 233 3 233 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 96 - G - - - ML 234 233 3 236 3 1 1 24 42 -9.055 -0.010 -7.709 -2.707 -3.821 1.872 -3.096 D 235 233 3 236 3 0 0 23 42 -6.174 -1.687 -0.566 IL 236 236 3 236 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 97 - G - - - ML 237 236 3 239 3 1 1 22 41 -9.055 -0.010 -7.709 -3.360 -4.717 1.923 -3.768 D 238 236 3 239 3 0 0 22 41 -6.174 -1.687 -0.566 IL 239 239 3 239 3 1 1 26 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 98 - U - - - ML 240 239 3 242 3 1 1 21 40 -9.055 -0.010 -7.709 -1.083 -0.619 -0.752 1.191 D 241 239 3 242 3 0 0 21 40 -6.174 -1.687 -0.566 IL 242 242 3 242 3 1 1 25 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 99 - C - - - ML 243 242 3 245 3 1 1 20 39 -9.055 -0.010 -7.709 -3.691 1.882 -4.404 -2.409 D 244 242 3 245 3 0 0 20 38 -6.174 -1.687 -0.566 IL 245 245 3 245 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 100 - G - - - ML 246 245 3 248 3 1 1 19 38 -9.055 -0.010 -7.709 -0.050 -2.631 1.411 -2.227 D 247 245 3 248 3 0 0 19 37 -6.174 -1.687 -0.566 IL 248 248 3 248 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 101 - C - - - ML 249 248 3 251 3 1 1 18 36 -9.055 -0.010 -7.709 -3.070 1.842 -3.620 -2.224 D 250 248 3 251 3 0 0 18 36 -6.174 -1.687 -0.566 IL 251 251 3 251 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 102 - C - - - ML 252 251 3 254 3 1 1 17 35 -9.055 -0.010 -7.709 -2.568 1.751 -3.413 -1.427 D 253 251 3 254 3 0 0 17 35 -6.174 -1.687 -0.566 IL 254 254 3 254 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 103 - u - - - ML 255 254 3 257 3 1 1 15 34 -9.055 -0.010 -7.709 0.121 -0.289 -0.233 0.315 D 256 254 3 257 3 0 0 15 34 -6.174 -1.687 -0.566 IL 257 257 3 257 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 104 - g - - - ML 258 257 3 260 3 1 1 14 32 -9.055 -0.312 -2.376 0.222 -0.635 0.455 -0.290 D 259 257 3 260 3 0 0 14 33 -6.174 -1.687 -0.566 IL 260 260 3 260 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 105 - a - - - ML 261 260 3 263 3 1 1 12 31 -8.755 -0.246 -2.695 0.216 -0.512 0.155 0.035 D 262 260 3 263 3 0 0 12 30 -8.406 -3.919 -0.103 IL 263 263 3 263 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 106 - c - - - ML 264 263 3 266 2 1 1 1 1 * 0.000 -0.015 0.210 -0.188 -0.035 D 265 263 3 266 2 0 0 0 0 * 0.000 IL 266 266 3 266 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 67 ] - - - - - - E 267 266 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME c-di-GMP-II-GAG ACC RF03169 DESC c-di-GMP-II-GAG riboswitch LENG 88 MAXL 409 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 1 10:39:29 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 472 EFFN 28.250427 CKSUM 2893079519 STATS LOCAL MSV -8.8219 0.71852 STATS LOCAL VITERBI -9.6489 0.71852 STATS LOCAL FORWARD -3.7694 0.71852 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55402 1.24268 1.10750 1.77425 1.38629 1.38629 1.38629 1.38629 0.01440 5.35479 4.64889 1.46634 0.26236 0.00000 * 1 1.55569 1.27852 1.29777 1.43815 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.00954 5.34993 5.34993 1.46634 0.26236 0.84081 0.56451 2 1.59429 1.22311 1.21047 1.58682 2 g - - < 1.38629 1.38629 1.38629 1.38629 0.00945 5.35925 5.35925 1.46634 0.26236 0.93665 0.49748 3 1.50555 1.33671 1.11648 1.67151 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.00933 5.37239 5.37239 1.46634 0.26236 1.09861 0.40547 4 1.56903 1.09620 1.50629 1.44441 4 c - - < 1.38629 1.38629 1.38629 1.38629 0.01135 5.37329 5.01386 1.46634 0.26236 1.09861 0.40547 5 1.38145 1.30811 1.30098 1.57894 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.00985 5.37905 5.26109 1.46634 0.26236 0.87386 0.54015 6 1.22417 1.51264 1.21985 1.65865 6 g - - < 1.38629 1.38629 1.38629 1.38629 0.01292 5.38046 4.79997 1.46634 0.26236 1.13950 0.38563 7 1.35956 1.42711 1.18383 1.62394 7 g - - < 1.38629 1.38629 1.38629 1.38629 0.01247 5.37733 4.85709 1.46634 0.26236 0.82388 0.57755 8 1.40512 1.07436 1.44846 1.72477 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.00928 5.37797 5.37797 1.46634 0.26236 0.72506 0.66222 9 1.96283 1.59992 0.75395 1.67600 9 g - - < 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 10 1.93203 2.25945 0.38813 2.62538 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01379 5.38386 4.69896 1.46634 0.26236 1.09861 0.40547 11 2.13721 3.21834 0.23237 3.00896 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.02513 4.46562 4.31836 0.67054 0.71627 0.86418 0.54714 12 0.24401 3.20103 1.91939 3.53681 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.01052 5.37374 5.14507 1.46634 0.26236 0.48622 0.95438 13 1.65131 1.32438 1.00799 1.73003 14 g - - < 1.38629 1.38629 1.38629 1.38629 0.00923 5.38268 5.38268 1.46634 0.26236 0.95211 0.48764 14 2.19386 3.06068 0.22277 3.18552 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 15 5.33555 0.09981 5.27553 2.46442 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.04688 3.34702 4.54602 0.24313 1.53325 1.09861 0.40547 16 1.17585 2.26859 1.12089 1.33943 18 g - - - 1.38629 1.38629 1.38629 1.38629 0.01582 5.37783 4.50267 1.46634 0.26236 0.97925 0.47095 17 1.03337 1.57737 1.84645 1.27339 19 a - - - 1.38629 1.38629 1.38629 1.38629 0.00931 5.37422 5.37422 1.46634 0.26236 0.86001 0.55019 18 1.40531 1.52149 2.16880 0.86273 20 u - - - 1.38629 1.38629 1.38629 1.38629 0.01069 5.37955 5.11218 1.46634 0.26236 1.37039 0.29304 19 4.01002 3.28334 0.07248 4.24893 21 G - - - 1.38629 1.38629 1.38629 1.38629 0.00928 5.37814 5.37814 1.46634 0.26236 0.78429 0.60962 20 0.06157 3.61510 3.81154 4.53927 22 A - - - 1.38629 1.38629 1.38629 1.38629 0.01193 5.38246 4.92495 1.46634 0.26236 1.19590 0.36015 21 1.54531 1.24043 3.06047 0.79711 23 u - - - 1.38629 1.38629 1.38629 1.38629 0.03618 3.59905 4.80543 0.30851 1.32631 0.72274 0.66440 22 1.87639 0.71008 1.47835 2.06169 25 c - - < 1.38629 1.38629 1.38629 1.38629 0.01984 4.54339 4.70975 0.71664 0.67019 0.75431 0.63551 23 3.04766 0.28735 2.82163 1.94650 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.00926 5.37947 5.37947 1.46634 0.26236 0.70451 0.68191 24 2.29821 1.58946 0.79296 1.41460 28 g - - < 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 25 2.22515 0.55385 1.93238 1.75786 29 C - - < 1.38629 1.38629 1.38629 1.38629 0.03977 3.36958 5.38386 0.24832 1.51461 1.09861 0.40547 26 1.96638 2.20419 0.36308 2.91567 31 G - - < 1.38629 1.38629 1.38629 1.38629 0.04290 3.41483 4.69785 0.56193 0.84422 1.09861 0.40547 27 1.91558 1.49336 0.89438 1.51746 34 g - - < 1.38629 1.38629 1.38629 1.38629 0.01143 5.37933 4.99804 1.46634 0.26236 1.16902 0.37204 28 1.75437 1.31436 1.09905 1.49099 35 g - - < 1.38629 1.38629 1.38629 1.38629 0.06237 2.92153 5.01885 0.39336 1.12327 0.64411 0.74472 29 2.50835 0.78732 1.13860 1.94304 38 c - - < 1.38629 1.38629 1.38629 1.38629 0.01254 5.38188 4.84503 1.46634 0.26236 1.23329 0.34437 30 1.97801 0.81601 2.18532 1.18084 39 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05134 5.37860 3.09157 1.46634 0.26236 1.42145 0.27623 31 1.59040 1.02746 1.16762 2.06252 40 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02755 5.33693 3.80033 1.46634 0.26236 0.38946 1.13142 32 1.91640 0.64184 2.93165 1.29743 41 C - - _ 1.38629 1.38629 1.38629 1.38629 0.50820 5.35670 0.93215 1.46634 0.26236 2.17913 0.12007 33 1.11046 1.45438 1.88369 1.25519 42 a - - _ 1.38629 1.38629 1.38629 1.38629 1.15990 0.38748 4.86406 2.85238 0.05944 0.47491 0.97271 34 0.76157 1.80778 1.66909 1.71131 91 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01085 5.22220 5.22220 1.46634 0.26236 0.06106 2.82621 35 0.83295 1.38753 1.81984 1.87411 92 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00923 5.38339 5.38339 1.46634 0.26236 1.13276 0.38882 36 1.51300 1.05654 1.73312 1.36507 93 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00923 5.38339 5.38339 1.46634 0.26236 1.13276 0.38882 37 0.86489 1.51173 2.03443 1.48009 94 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00923 5.38339 5.38339 1.46634 0.26236 1.03363 0.43961 38 4.08743 0.12285 3.78322 2.57607 95 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 39 4.30818 4.84298 0.03951 4.05130 96 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 40 5.22914 6.35899 0.01635 4.69625 97 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 41 3.47388 1.95636 1.88643 0.39153 98 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 42 5.40356 0.03255 5.68595 3.72409 99 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 43 1.41135 4.21616 0.31814 4.27365 100 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 44 4.61917 0.04367 4.54999 3.80293 101 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 45 4.18260 0.08786 4.71888 2.81456 102 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 46 1.37755 1.57022 1.47425 1.16843 103 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 47 1.24190 1.88608 0.89780 1.88363 104 g - - _ 1.38629 1.38629 1.38629 1.38629 0.25963 5.38386 1.49579 1.46634 0.26236 1.09861 0.40547 48 1.26388 1.79393 1.12259 1.48853 105 g - - _ 1.38629 1.38629 1.38629 1.38629 0.21366 5.13607 1.67935 1.46634 0.26236 3.92822 0.01987 49 1.57400 1.01211 1.41484 1.68003 106 c - - _ 1.38629 1.38629 1.38629 1.38629 0.83717 0.59478 4.17454 2.99835 0.05116 0.03788 3.29223 50 2.24207 1.25909 0.70296 2.16515 152 g - - > 1.38629 1.38629 1.38629 1.38629 0.03868 3.40199 5.37384 0.25837 1.47978 0.48868 0.95045 51 1.44033 1.15625 1.25863 1.80519 154 c - - > 1.38629 1.38629 1.38629 1.38629 0.01033 5.38386 5.17015 1.46634 0.26236 1.09861 0.40547 52 1.77941 1.11703 1.24374 1.53383 155 c - - > 1.38629 1.38629 1.38629 1.38629 0.01922 4.23785 5.38277 0.54774 0.86335 0.96132 0.48189 53 3.06102 0.45696 2.12300 1.60802 157 C - - > 1.38629 1.38629 1.38629 1.38629 0.01547 5.38386 4.53168 1.46634 0.26236 1.09861 0.40547 54 1.97800 2.06127 0.46152 2.26299 158 G - - > 1.38629 1.38629 1.38629 1.38629 0.03540 3.50108 5.37767 0.51408 0.91144 0.61679 0.77582 55 1.53392 0.84536 1.48499 2.05256 161 c - - > 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 56 2.11383 2.92733 0.26324 2.86250 162 G - - > 1.38629 1.38629 1.38629 1.38629 0.01282 5.38386 4.80951 1.46634 0.26236 1.09861 0.40547 57 2.08961 1.39663 0.71733 1.96055 163 g - - > 1.38629 1.38629 1.38629 1.38629 0.02141 4.29028 4.89590 0.57487 0.82731 0.75431 0.63551 58 2.85382 1.45905 0.50540 2.23817 165 G - - - 1.38629 1.38629 1.38629 1.38629 0.01615 5.38100 4.47229 1.46634 0.26236 0.80296 0.59421 59 3.54284 4.57006 0.07467 3.42141 166 G - - - 1.38629 1.38629 1.38629 1.38629 0.01394 5.37704 4.68571 1.46634 0.26236 1.49987 0.25252 60 0.05975 4.87096 3.36000 4.16049 167 A - - - 1.38629 1.38629 1.38629 1.38629 0.02317 4.00316 5.37243 0.75919 0.63120 0.45434 1.00750 61 4.14914 5.41409 0.02656 5.11968 170 G - - > 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 62 3.63123 0.24209 2.97807 1.98312 171 C - - > 1.38629 1.38629 1.38629 1.38629 0.01136 5.38386 5.00495 1.46634 0.26236 1.09861 0.40547 63 1.89187 0.96110 1.13684 1.92480 172 c - - > 1.38629 1.38629 1.38629 1.38629 0.02043 4.15911 5.38175 0.51134 0.91552 0.86256 0.54832 64 0.02052 5.17525 4.76783 5.09044 174 A - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 65 1.60664 1.77918 0.52592 3.22766 175 G - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 66 3.49672 3.30294 4.07973 0.08772 176 U - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 67 2.98097 4.49083 0.07729 4.38828 177 G - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 68 3.73391 5.25015 0.03682 4.96177 178 G - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 69 4.55370 0.30472 5.25936 1.39859 179 C - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 70 4.47219 6.41351 0.01632 5.76802 180 G - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 71 0.21385 1.90311 3.66445 4.02809 181 A - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 72 5.30460 6.49901 0.00947 5.82594 182 G - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 73 0.00760 6.26883 5.80713 5.92535 183 A - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 74 5.55697 0.01786 5.83672 4.51703 184 C - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 75 5.12622 0.02325 4.75848 4.77152 185 C - - - 1.38629 1.38629 1.38629 1.38629 0.00922 5.38386 5.38386 1.46634 0.26236 1.09861 0.40547 76 5.30460 6.49901 0.00947 5.82594 186 G - - - 1.38629 1.38629 1.38629 1.38629 0.00985 5.38386 5.25732 1.46634 0.26236 1.09861 0.40547 77 0.74243 2.75708 0.85513 3.34272 187 a - - - 1.38629 1.38629 1.38629 1.38629 0.01751 4.49070 5.09186 0.68297 0.70342 1.01605 0.44945 78 2.96645 0.26254 3.02516 2.03355 189 C - - > 1.38629 1.38629 1.38629 1.38629 0.00924 5.38231 5.38231 1.46634 0.26236 0.91407 0.51231 79 2.99754 0.43206 2.23642 1.63947 190 C - - > 1.38629 1.38629 1.38629 1.38629 0.01246 5.38386 4.85500 1.46634 0.26236 1.09861 0.40547 80 1.74856 0.80295 1.59130 1.74691 191 c - - > 1.38629 1.38629 1.38629 1.38629 0.01129 5.37880 5.01825 1.46634 0.26236 0.77866 0.61437 81 1.85973 1.59051 0.87715 1.49389 192 g - - > 1.38629 1.38629 1.38629 1.38629 0.03871 5.37953 3.40040 1.46634 0.26236 1.23376 0.34418 82 1.71802 1.25173 1.25719 1.38582 193 c - - > 1.38629 1.38629 1.38629 1.38629 0.08572 3.35465 3.05282 0.25279 1.49892 1.08324 0.41324 83 1.50179 1.27979 1.17031 1.66652 195 g - - > 1.38629 1.38629 1.38629 1.38629 0.03591 3.51511 5.19755 0.30235 1.34353 0.13055 2.10058 84 1.62337 1.12680 1.19430 1.73851 197 c - - > 1.38629 1.38629 1.38629 1.38629 0.00937 5.36834 5.36834 1.46634 0.26236 1.02016 0.44713 85 1.43723 1.49964 1.03602 1.69099 198 g - - > 1.38629 1.38629 1.38629 1.38629 0.01495 5.36230 4.59009 1.46634 0.26236 1.09861 0.40547 86 1.55927 1.43106 1.19895 1.38973 199 g - - > 1.38629 1.38629 1.38629 1.38629 0.01665 5.33623 4.44857 1.46634 0.26236 1.42661 0.27460 87 1.58314 1.51492 1.01875 1.54272 200 g - - > 1.38629 1.38629 1.38629 1.38629 0.03822 5.30998 3.42464 1.46634 0.26236 1.72169 0.19694 88 1.29021 1.51072 1.20504 1.58788 201 g - - > 1.38629 1.38629 1.38629 1.38629 0.00512 5.27688 * 1.46634 0.26236 0.00000 * //