INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1012 ACC RF03171 DESC mir-1012 microRNA precursor family STATES 181 NODES 38 CLEN 59 W 74 ALPH RNA RF no CONS yes MAP yes DATE Sat Aug 15 22:39:46 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0001046__mir-1012_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.691406 CKSUM 1792507424 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 88.40 NC 48.50 EFP7GF -5.1982 0.72730 ECMLC 0.61560 -5.82648 3.81538 1600000 453910 0.002644 ECMGC 0.41539 -15.73656 -0.30408 1600000 243282 0.001644 ECMLI 0.60580 -4.42807 4.92593 1600000 346889 0.003459 ECMGI 0.45060 -10.78788 2.41342 1600000 153271 0.002610 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 74 93 -6.772 -8.017 -0.086 -4.471 IL 1 1 2 1 4 1 2 75 95 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 3 76 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 59 - G - - MR 3 2 3 5 3 1 4 74 93 -8.268 -0.020 -6.585 -1.381 -2.568 1.673 -1.954 D 4 2 3 5 3 0 0 72 91 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 2 75 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 58 - A - - MR 6 5 3 8 5 1 4 73 92 -7.012 -0.041 -6.828 -7.040 -7.931 1.675 -2.184 -1.835 -1.708 D 7 5 3 8 5 0 0 72 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 1 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 57 g u - - MP 9 8 3 13 6 2 5 72 91 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.500 -2.315 -3.656 1.203 -4.277 -5.004 0.094 -3.696 -3.351 1.515 -3.866 2.949 -0.266 -4.235 -1.847 -2.383 ML 10 8 3 13 6 1 1 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 1 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 1 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 56 U A - - MP 15 14 6 19 6 2 5 70 89 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 16 14 6 19 6 1 1 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 1 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 66 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 1 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 55 G C - - MP 21 20 6 25 6 2 4 68 87 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 22 20 6 25 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 1 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 1 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 54 G C - - MP 27 26 6 31 6 2 4 66 85 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 28 26 6 31 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 65 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 53 G C - - MP 33 32 6 37 4 2 2 64 83 -6.847 -7.054 -0.057 -5.468 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 34 32 6 37 4 1 1 64 84 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 4 1 1 64 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 36 32 6 37 4 0 0 63 82 -4.568 -4.250 -2.265 -0.520 IL 37 37 5 37 4 1 1 66 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 38 38 6 38 3 1 1 65 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - U - - - ML 39 38 6 41 3 1 1 61 80 -8.268 -0.020 -6.585 -1.315 -1.342 -2.039 1.566 D 40 38 6 41 3 0 0 60 79 -5.620 -0.734 -1.403 IL 41 41 3 41 3 1 1 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 52 - C - - MR 42 41 3 44 5 1 1 60 79 -7.012 -0.041 -6.828 -7.040 -7.931 -1.517 1.558 -2.332 -0.976 D 43 41 3 44 5 0 0 59 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 44 44 3 44 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 7 51 A U - - MP 45 44 3 49 6 2 2 59 78 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 46 44 3 49 6 1 1 58 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 3 49 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 3 49 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 59 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 50 g u - - MP 51 50 6 55 6 2 2 57 76 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.500 -2.315 -3.656 1.203 -4.277 -5.004 0.094 -3.696 -3.351 1.515 -3.866 2.949 -0.266 -4.235 -1.847 -2.383 ML 52 50 6 55 6 1 1 56 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 57 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 49 A U - - MP 57 56 6 61 6 2 2 55 74 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 58 56 6 61 6 1 1 54 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 54 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 52 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 55 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 48 A U - - MP 63 62 6 67 4 2 2 53 72 -6.772 -8.017 -0.086 -4.471 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 64 62 6 67 4 1 1 53 72 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 4 1 1 52 71 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 66 62 6 67 4 0 0 50 69 -12.737 -14.007 -2.036 -0.404 IL 67 67 5 67 4 1 1 53 72 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 68 68 6 68 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 47 - A - - MR 69 68 6 71 5 1 1 51 70 -7.012 -0.041 -6.828 -7.040 -7.931 1.675 -2.184 -1.835 -1.708 D 70 68 6 71 5 0 0 50 69 -5.352 -0.707 -2.978 -4.409 -2.404 IR 71 71 3 71 5 1 1 52 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 46 C G - - MP 72 71 3 76 6 2 2 50 69 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.363 -4.252 -4.084 -0.502 -2.844 -4.520 3.489 -3.635 -4.127 -0.233 -4.408 -2.197 0.688 -4.444 -0.547 -2.974 ML 73 71 3 76 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 3 76 6 1 1 49 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 3 76 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 45 U A - - MP 78 77 6 82 6 2 2 48 67 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 79 77 6 82 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 44 U A - - MP 84 83 6 88 6 2 2 46 65 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 85 83 6 88 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 46 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 43 U A - - MP 90 89 6 94 6 2 2 44 63 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 91 89 6 94 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 44 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 42 G C - - MP 96 95 6 100 6 2 2 42 61 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -4.563 -3.009 -4.647 0.318 -4.980 -4.623 -0.389 -4.876 -4.208 3.592 -4.559 -0.702 -0.779 -4.350 -2.417 -3.527 ML 97 95 6 100 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 6 100 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 42 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 41 A U - - MP 102 101 6 106 6 2 2 40 59 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 103 101 6 106 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 39 58 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 40 u g - - MP 108 107 6 112 6 2 2 38 57 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.902 -3.815 -3.648 -0.169 -2.466 -4.104 1.816 -3.220 -3.686 0.057 -3.998 -1.822 0.994 -4.005 2.876 -2.567 ML 109 107 6 112 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 39 U A - - MP 114 113 6 118 6 2 2 36 55 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 115 113 6 118 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 38 A U - - MP 120 119 6 124 6 2 2 34 53 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 121 119 6 124 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 37 A U - - MP 126 125 6 130 6 2 2 32 51 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 127 125 6 130 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 36 U A - - MP 132 131 6 136 6 2 2 30 49 -9.070 -9.009 -0.022 -7.786 -8.065 -8.460 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 133 131 6 136 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 35 A U - - MP 138 137 6 142 6 2 2 28 47 -9.070 -9.009 -0.165 -3.354 -8.065 -8.460 -3.641 -2.712 -3.670 3.224 -3.934 -4.983 0.356 -3.721 -3.568 1.241 -4.108 -0.214 -0.062 -4.196 -1.585 -2.513 ML 139 137 6 142 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 34 u a - - MP 144 143 6 148 6 2 2 26 45 -8.929 -8.868 -0.024 -7.644 -7.924 -8.319 -3.390 -3.149 -3.305 0.484 -2.444 -3.932 1.858 -3.071 -3.322 0.929 -3.728 -1.060 2.707 -3.559 -0.140 -2.210 ML 145 143 6 148 6 1 1 25 44 -7.393 -7.739 -0.455 -2.148 -7.589 -5.118 -0.650 -0.812 -1.321 1.259 MR 146 143 6 148 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 33 U A - - MP 150 149 6 154 4 2 2 24 43 -6.847 -7.054 -0.057 -5.468 -3.999 -3.817 -3.858 -0.126 -2.842 -4.439 1.482 -3.524 -3.864 0.158 -4.247 -1.722 3.228 -4.157 -0.523 -2.707 ML 151 149 6 154 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 153 149 6 154 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 154 154 5 154 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 155 155 6 155 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - G - - - ML 156 155 6 158 3 1 1 21 40 -7.871 -0.022 -6.525 -1.381 -2.568 1.673 -1.954 D 157 155 6 158 3 0 0 20 39 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - C - - - ML 159 158 3 161 3 1 1 20 39 -7.871 -0.022 -6.525 -1.517 1.558 -2.332 -0.976 D 160 158 3 161 3 0 0 19 38 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - U - - - ML 162 161 3 164 3 1 1 19 38 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 163 161 3 164 3 0 0 18 37 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - U - - - ML 165 164 3 167 3 1 1 18 36 -7.871 -0.022 -6.525 -1.315 -1.342 -2.039 1.566 D 166 164 3 167 3 0 0 17 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - G - - - ML 168 167 3 170 3 1 1 16 35 -7.871 -0.022 -6.525 -1.381 -2.568 1.673 -1.954 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - A - - - ML 171 170 3 173 3 1 1 15 33 -7.871 -0.022 -6.525 1.675 -2.184 -1.835 -1.708 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - a - - - ML 174 173 3 176 3 1 1 13 32 -7.871 -0.022 -6.525 0.695 -1.315 0.458 -0.724 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - A - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 1.675 -2.184 -1.835 -1.708 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1012 ACC RF03171 DESC mir-1012 microRNA precursor family LENG 59 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sat Aug 15 22:39:46 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 2 EFFN 1.925781 CKSUM 1792507424 STATS LOCAL MSV -8.2458 0.72730 STATS LOCAL VITERBI -9.0752 0.72730 STATS LOCAL FORWARD -2.8137 0.72730 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30641 1.66487 1.40155 1.22494 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 1.82671 2.67760 0.36644 2.56223 1 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.74067 1.73945 2.46663 0.39306 2 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.44961 3.01929 0.20687 2.96206 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.45010 3.01981 0.20674 2.96280 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.45014 3.01986 0.20673 2.96287 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.41442 2.41220 2.92287 0.26503 6 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.44020 2.52417 1.65578 2.46483 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 1.82902 2.68172 0.36487 2.56791 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 0.43977 2.52537 1.65590 2.46668 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.43978 2.52535 1.65590 2.46664 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.95797 0.30198 2.72051 1.94573 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.73435 1.73931 2.46413 0.39402 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.73893 1.73942 2.46594 0.39333 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.74096 1.73946 2.46675 0.39302 14 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.44887 3.01850 0.20707 2.96093 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.44016 2.52427 1.65579 2.46498 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.74433 1.47787 2.50931 0.46799 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.74200 1.73949 2.46716 0.39286 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.44018 2.52421 1.65578 2.46489 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.44020 2.52417 1.65578 2.46483 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.74167 1.73948 2.46703 0.39291 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.44022 2.52410 1.65577 2.46472 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.23924 1.47046 1.94758 0.65196 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.67035 1.73781 2.43825 0.40414 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.47995 3.32542 0.19202 2.90035 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.59099 0.26106 3.16196 2.18503 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.41442 2.41220 2.92287 0.26503 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.41442 2.41220 2.92287 0.26503 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.47995 3.32542 0.19202 2.90035 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.19520 3.02828 2.77335 2.71093 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.89077 2.35216 1.04567 1.94462 31 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.19520 3.02828 2.77335 2.71093 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.44695 2.64526 1.57626 2.49264 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.33367 3.73767 1.34744 1.46634 0.26236 1.09861 0.40547 34 0.78530 2.06518 1.25723 2.01905 34 a - - > 1.38629 1.38629 1.38629 1.38629 0.06436 3.46836 3.46836 1.46634 0.26236 0.16824 1.86532 35 2.69237 1.92573 2.33811 0.37106 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.44655 2.64662 1.57631 2.49443 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.69262 1.92575 2.33820 0.37102 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.69279 1.92576 2.33825 0.37099 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.44649 2.64686 1.57632 2.49474 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 1.99131 2.68295 0.33903 2.49298 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.69358 1.92583 2.33852 0.37087 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 3.17229 0.24315 2.85066 2.15305 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.44629 2.64752 1.57634 2.49561 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.44621 2.64780 1.57635 2.49598 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.44611 2.64816 1.57636 2.49645 45 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 2.22591 2.90012 0.25793 2.74314 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 0.19520 3.02828 2.77335 2.71093 47 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.69766 1.92617 2.33989 0.37020 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.69901 1.92628 2.34035 0.36999 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.78914 1.73222 2.48714 0.38789 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.70291 1.92660 2.34165 0.36936 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.59099 0.26106 3.16196 2.18503 52 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 3.17519 0.24282 2.85186 2.15362 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 3.17672 0.24265 2.85250 2.15391 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 3.17864 0.24243 2.85329 2.15428 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 0.44571 2.64952 1.57641 2.49824 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.78909 1.73222 2.48712 0.38789 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.19520 3.02828 2.77335 2.71093 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 2.47995 3.32542 0.19202 2.90035 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //