INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1898 ACC RF03205 DESC mir-1898 microRNA precursor family STATES 187 NODES 40 CLEN 61 W 76 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 20 14:50:09 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0000786__mir-1898_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.496094 CKSUM 4003136827 NULL 0.000 0.000 0.000 0.000 GA 78.00 TC 78.00 NC 77.70 EFP7GF -5.3589 0.72542 ECMLC 0.60479 -5.50175 3.96562 1600000 368018 0.003261 ECMGC 0.39797 -16.12393 -1.11158 1600000 157311 0.002543 ECMLI 0.58879 -4.37141 5.03698 1600000 305493 0.003928 ECMGI 0.44045 -10.89255 1.85698 1600000 109858 0.003641 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 76 96 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 IL 1 1 2 1 6 1 6 78 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 7 78 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 61 A U - - MP 3 2 3 7 6 2 11 76 96 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 4 2 3 7 6 1 5 75 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 4 75 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 0 72 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 6 76 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 6 76 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 60 G C - - MP 9 8 6 13 6 2 11 74 94 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 10 8 6 13 6 1 4 73 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 4 73 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 0 70 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 6 74 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 6 74 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 59 G C - - MP 15 14 6 19 6 2 10 72 92 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 16 14 6 19 6 1 4 71 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 4 71 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 5 72 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 5 72 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 58 U A - - MP 21 20 6 25 6 2 10 70 90 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 22 20 6 25 6 1 4 69 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 3 69 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 5 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 5 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 57 C G - - MP 27 26 6 31 6 2 9 68 88 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 28 26 6 31 6 1 3 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 3 67 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 4 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 5 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 56 A U - - MP 33 32 6 37 6 2 9 66 86 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 34 32 6 37 6 1 3 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 3 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 4 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 4 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 55 A U - - MP 39 38 6 43 6 2 8 64 84 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 40 38 6 43 6 1 3 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 4 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 4 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 8 54 g u - - MP 45 44 6 49 6 2 7 62 82 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.401 -2.260 -3.548 1.256 -4.087 -4.822 0.263 -3.603 -3.274 1.647 -3.785 2.813 -0.099 -4.068 -1.677 -2.298 ML 46 44 6 49 6 1 2 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 3 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 53 G C - - MP 51 50 6 55 6 2 5 60 80 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 52 50 6 55 6 1 2 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 2 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 58 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 3 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 3 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 52 U A - - MP 57 56 6 61 4 2 4 58 78 -6.758 -6.965 -0.061 -5.380 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 58 56 6 61 4 1 1 59 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 58 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 57 77 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 2 60 80 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 2 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 63 62 6 65 3 1 3 56 75 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 64 62 6 65 3 0 0 55 74 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 2 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - C - - - ML 66 65 3 68 3 1 2 55 74 -8.192 -0.021 -6.510 -1.326 1.490 -2.132 -0.826 D 67 65 3 68 3 0 0 54 73 -5.620 -0.734 -1.403 IL 68 68 3 68 3 1 1 56 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 51 - U - - MR 69 68 3 71 3 1 2 54 73 -8.192 -0.021 -6.510 -1.170 -1.223 -1.885 1.514 D 70 68 3 71 3 0 0 52 72 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 55 74 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 50 - U - - MR 72 71 3 74 5 1 1 53 72 -6.942 -0.043 -6.757 -6.969 -7.861 -1.170 -1.223 -1.885 1.514 D 73 71 3 74 5 0 0 52 71 -5.352 -0.707 -2.978 -4.409 -2.404 IR 74 74 3 74 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 13 49 A U - - MP 75 74 3 79 6 2 2 52 71 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 76 74 3 79 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 3 79 6 1 1 50 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 3 79 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 14 48 C G - - MP 81 80 6 85 6 2 2 50 69 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 82 80 6 85 6 1 1 48 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 46 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 15 47 A U - - MP 87 86 6 91 6 2 2 48 67 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 88 86 6 91 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 46 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 16 46 G C - - MP 93 92 6 97 6 2 2 46 65 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 94 92 6 97 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 17 45 g u - - MP 99 98 6 103 4 2 2 44 63 -6.758 -6.965 -0.061 -5.380 -3.401 -2.260 -3.548 1.256 -4.087 -4.822 0.263 -3.603 -3.274 1.647 -3.785 2.813 -0.099 -4.068 -1.677 -2.298 ML 100 98 6 103 4 1 1 44 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 44 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 43 62 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 46 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - G - - - ML 105 104 6 107 3 1 1 41 60 -7.789 -0.023 -6.443 -1.207 -2.364 1.621 -1.749 D 106 104 6 107 3 0 0 40 59 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - G - - - ML 108 107 3 110 3 1 1 40 59 -8.192 -0.021 -6.510 -1.207 -2.364 1.621 -1.749 D 109 107 3 110 3 0 0 39 58 -5.620 -0.734 -1.403 IL 110 110 3 110 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 44 - A - - MR 111 110 3 113 3 1 1 39 58 -8.192 -0.021 -6.510 1.631 -2.022 -1.689 -1.532 D 112 110 3 113 3 0 0 38 56 -6.390 -1.568 -0.620 IR 113 113 3 113 3 1 1 40 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 43 - A - - MR 114 113 3 116 5 1 1 38 57 -6.942 -0.043 -6.757 -6.969 -7.861 1.631 -2.022 -1.689 -1.532 D 115 113 3 116 5 0 0 37 56 -5.352 -0.707 -2.978 -4.409 -2.404 IR 116 116 3 116 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 42 A U - - MP 117 116 3 121 6 2 2 37 56 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 118 116 3 121 6 1 1 36 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 3 121 6 1 1 36 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 3 121 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 41 U A - - MP 123 122 6 127 4 2 2 35 54 -6.691 -7.937 -0.091 -4.390 -3.842 -3.653 -3.717 0.025 -2.738 -4.312 1.581 -3.407 -3.726 0.339 -4.116 -1.562 3.131 -4.005 -0.423 -2.582 ML 124 122 6 127 4 1 1 34 53 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 34 53 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 32 51 -12.737 -14.007 -2.036 -0.404 IL 127 127 5 127 4 1 1 35 53 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 40 - U - - MR 129 128 6 131 5 1 1 33 52 -6.942 -0.043 -6.757 -6.969 -7.861 -1.170 -1.223 -1.885 1.514 D 130 128 6 131 5 0 0 32 51 -5.352 -0.707 -2.978 -4.409 -2.404 IR 131 131 3 131 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 39 C G - - MP 132 131 3 136 6 2 2 32 51 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.202 -4.074 -3.949 -0.342 -2.748 -4.405 3.427 -3.523 -3.988 -0.044 -4.284 -2.018 0.798 -4.293 -0.449 -2.841 ML 133 131 3 136 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 3 136 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 3 136 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 38 A U - - MP 138 137 6 142 6 2 2 30 49 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 139 137 6 142 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 24 37 A U - - MP 144 143 6 148 6 2 2 28 47 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 145 143 6 148 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 25 36 G C - - MP 150 149 6 154 6 2 2 26 45 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -4.404 -2.934 -4.478 0.420 -4.756 -4.557 -0.203 -4.692 -4.098 3.545 -4.461 -0.623 -0.598 -4.244 -2.223 -3.360 ML 151 149 6 154 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 26 35 A U - - MP 156 155 6 160 6 2 2 24 43 -9.038 -8.977 -0.022 -7.754 -8.034 -8.429 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 157 155 6 160 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 24 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 27 34 A U - - MP 162 161 6 166 4 2 2 22 41 -6.758 -6.965 -0.061 -5.380 -3.517 -2.623 -3.553 3.118 -3.758 -4.799 0.526 -3.611 -3.459 1.376 -3.992 -0.147 0.106 -4.031 -1.417 -2.406 ML 163 161 6 166 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 28 - A - - - ML 168 167 6 170 3 1 1 19 38 -7.789 -0.023 -6.443 1.631 -2.022 -1.689 -1.532 D 169 167 6 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - U - - - ML 171 170 3 173 3 1 1 18 36 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 172 170 3 173 3 0 0 17 36 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - A - - - ML 174 173 3 176 3 1 1 16 35 -7.789 -0.023 -6.443 1.631 -2.022 -1.689 -1.532 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - U - - - ML 177 176 3 179 3 1 1 15 33 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - U - - - ML 180 179 3 182 3 1 1 13 32 -7.789 -0.023 -6.443 -1.170 -1.223 -1.885 1.514 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - A - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 1.631 -2.022 -1.689 -1.532 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 39 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1898 ACC RF03205 DESC mir-1898 microRNA precursor family LENG 61 MAXL 148 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 20 14:50:09 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 2 EFFN 1.824219 CKSUM 4003136827 STATS LOCAL MSV -8.1609 0.72542 STATS LOCAL VITERBI -9.0985 0.72542 STATS LOCAL FORWARD -2.8878 0.72542 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36298 1.60804 1.41852 1.19816 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.46566 2.47307 1.61371 2.42130 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.42695 2.97336 0.21470 2.92286 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.42305 2.96933 0.21577 2.91705 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.69660 1.70126 2.40902 0.41520 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.93695 0.31441 2.67384 1.91211 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 0.46854 2.46559 1.61312 2.40952 6 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.46868 2.46521 1.61309 2.40893 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 1.80759 2.62574 0.38162 2.51562 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.41619 2.96224 0.21767 2.90685 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.68962 1.70117 2.40636 0.41630 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.36441 2.37103 2.87021 0.27982 11 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.52520 0.27955 3.09393 2.13273 12 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.46927 2.46369 1.61297 2.40654 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.93104 0.31527 2.67131 1.91117 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 0.46879 2.46494 1.61307 2.40850 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.41671 2.96277 0.21753 2.90762 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 1.80752 2.62562 0.38167 2.51545 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.42180 3.25800 0.20590 2.83261 18 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.42180 3.25800 0.20590 2.83261 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.46925 2.46373 1.61297 2.40661 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.69006 1.70118 2.40653 0.41623 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.90683 0.31886 2.66084 1.90728 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.47006 2.46166 1.61281 2.40336 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.46951 2.46308 1.61292 2.40559 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.41412 2.96010 0.21825 2.90378 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.46917 2.46396 1.61299 2.40696 26 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.46914 2.46403 1.61300 2.40709 27 A - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 0.20742 2.97349 2.72407 2.65085 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.36441 2.37103 2.87021 0.27982 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 0.20742 2.97349 2.72407 2.65085 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.36441 2.37103 2.87021 0.27982 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.36441 2.37103 2.87021 0.27982 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.20742 2.97349 2.72407 2.65085 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.63640 1.87709 2.27884 0.39609 34 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.63678 1.87712 2.27897 0.39603 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 3.11888 0.25557 2.79238 2.11989 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.63782 1.87720 2.27931 0.39585 37 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.63854 1.87725 2.27954 0.39572 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.18645 2.83900 0.27273 2.68965 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.36441 2.37103 2.87021 0.27982 40 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.47276 2.58743 1.53796 2.44542 41 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.64471 1.87769 2.28154 0.39467 42 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.20742 2.97349 2.72407 2.65085 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.20742 2.97349 2.72407 2.65085 44 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.73312 1.68714 2.43023 0.41261 45 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 3.12391 0.25497 2.79443 2.12087 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.64125 1.87744 2.28042 0.39526 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.18821 2.84114 0.27206 2.69242 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.64466 1.87768 2.28152 0.39468 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 2.36441 2.37103 2.87021 0.27982 50 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.36441 2.37103 2.87021 0.27982 51 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 0.47349 2.58509 1.53793 2.44228 52 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 3.12038 0.25539 2.79299 2.12018 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.73289 1.68714 2.43014 0.41265 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 2.63989 1.87734 2.27998 0.39549 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.64123 1.87744 2.28041 0.39526 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 2.18836 2.84133 0.27200 2.69265 57 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 58 0.47238 2.58864 1.53797 2.44705 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 59 3.14052 0.25302 2.80117 2.12405 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 60 3.15064 0.25184 2.80524 2.12598 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 61 2.66361 1.87902 2.28761 0.39148 61 U - - > 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //