INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1544 ACC RF03310 DESC mir-1544 microRNA precursor family STATES 181 NODES 46 CLEN 59 W 75 ALPH RNA RF no CONS yes MAP yes DATE Wed May 24 17:16:40 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates/RF03310/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 6 EFFN 2.194336 CKSUM 460076686 NULL 0.000 0.000 0.000 0.000 GA 46.00 TC 46.50 NC 39.50 EFP7GF -10.3425 0.71926 ECMLC 0.62359 -6.41099 2.93130 1600000 406714 0.002950 ECMGC 0.48437 -14.89129 -3.00578 1600000 126563 0.003160 ECMLI 0.61496 -5.20950 3.74098 1600000 294868 0.004070 ECMGI 0.52869 -10.50885 -0.28743 1600000 88910 0.004499 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 75 95 -7.053 -7.260 -0.049 -5.674 IL 1 1 2 1 4 1 17 79 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - G - - - ML 3 2 3 5 3 1 16 75 95 -8.062 -0.019 -6.716 -0.150 -1.874 1.273 -1.288 D 4 2 3 5 3 0 11 73 93 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 16 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 3 - C - - - ML 6 5 3 8 3 1 16 74 94 -8.062 -0.019 -6.716 -1.980 1.683 -2.810 -1.345 D 7 5 3 8 3 0 10 72 92 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 15 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 4 - A - - - ML 9 8 3 11 3 1 15 73 93 -8.062 -0.019 -6.716 1.056 -1.492 0.056 -0.930 D 10 8 3 11 3 0 10 71 91 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 14 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 5 - C - - - ML 12 11 3 14 3 1 14 72 91 -8.446 -0.018 -6.764 -1.980 1.683 -2.810 -1.345 D 13 11 3 14 3 0 9 70 90 -5.620 -0.734 -1.403 IL 14 14 3 14 3 1 13 73 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 60 - G - - MR 15 14 3 17 3 1 13 71 90 -8.446 -0.018 -6.764 -1.788 -3.039 1.767 -2.427 D 16 14 3 17 3 0 7 69 89 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 12 72 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 59 - G - - MR 18 17 3 20 3 1 13 70 89 -8.446 -0.018 -6.764 -0.150 -1.874 1.273 -1.288 D 19 17 3 20 3 0 6 68 88 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 58 - U - - MR 21 20 3 23 3 1 12 69 88 -8.446 -0.018 -6.764 -0.949 -0.331 -1.698 1.250 D 22 20 3 23 3 0 6 67 87 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 10 70 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 57 - C - - MR 24 23 3 26 3 1 11 68 87 -8.446 -0.018 -6.764 -1.980 1.683 -2.810 -1.345 D 25 23 3 26 3 0 5 66 86 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 10 69 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 56 - A - - MR 27 26 3 29 3 1 11 67 86 -8.446 -0.018 -6.764 1.758 -2.569 -2.181 -2.131 D 28 26 3 29 3 0 4 65 85 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 9 68 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 55 - U - - MR 30 29 3 32 5 1 11 66 85 -7.179 -0.037 -6.994 -7.206 -8.098 -1.668 -1.633 -2.410 1.667 D 31 29 3 32 5 0 3 64 84 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 7 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 6 54 C G - - MP 33 32 3 37 6 2 12 65 84 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -4.765 -4.690 -4.418 -0.903 -3.090 -4.802 3.612 -3.922 -4.475 -0.692 -4.712 -2.640 0.401 -4.820 -0.802 -3.308 ML 34 32 3 37 6 1 5 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 5 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 3 37 6 0 1 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 7 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 7 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 7 53 C G - - MP 39 38 6 43 6 2 11 63 82 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -4.765 -4.690 -4.418 -0.903 -3.090 -4.802 3.612 -3.922 -4.475 -0.692 -4.712 -2.640 0.401 -4.820 -0.802 -3.308 ML 40 38 6 43 6 1 5 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 5 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 1 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 7 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 8 52 A U - - MP 45 44 6 49 6 2 11 61 80 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -3.970 -2.957 -3.975 3.436 -4.404 -5.484 -0.092 -4.005 -3.860 0.885 -4.417 -0.405 -0.508 -4.641 -2.032 -2.799 ML 46 44 6 49 6 1 4 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 4 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 6 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 6 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 9 51 G C - - MP 51 50 6 55 6 2 10 59 78 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -4.936 -3.187 -5.056 0.069 -5.506 -4.769 -0.822 -5.311 -4.453 3.682 -4.776 -0.894 -1.202 -4.595 -2.870 -3.930 ML 52 50 6 55 6 1 4 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 4 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 5 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 6 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 10 50 G C - - MP 57 56 6 61 6 2 10 57 76 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -4.936 -3.187 -5.056 0.069 -5.506 -4.769 -0.822 -5.311 -4.453 3.682 -4.776 -0.894 -1.202 -4.595 -2.870 -3.930 ML 58 56 6 61 6 1 4 55 75 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 4 55 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 53 72 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 5 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 5 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 11 49 G C - - MP 63 62 6 67 6 2 9 55 74 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -4.936 -3.187 -5.056 0.069 -5.506 -4.769 -0.822 -5.311 -4.453 3.682 -4.776 -0.894 -1.202 -4.595 -2.870 -3.930 ML 64 62 6 67 6 1 3 53 73 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 3 53 73 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 51 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 5 54 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 5 54 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 12 48 A U - - MP 69 68 6 73 6 2 8 53 72 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -3.970 -2.957 -3.975 3.436 -4.404 -5.484 -0.092 -4.005 -3.860 0.885 -4.417 -0.405 -0.508 -4.641 -2.032 -2.799 ML 70 68 6 73 6 1 3 51 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 3 51 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 49 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 4 52 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 4 52 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 13 47 U A - - MP 75 74 6 79 6 2 6 51 70 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -4.423 -4.253 -4.235 -0.532 -3.128 -4.777 1.204 -3.840 -4.238 -0.310 -4.599 -2.145 3.428 -4.565 -0.799 -3.037 ML 76 74 6 79 6 1 2 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 2 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 3 50 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 3 50 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 14 46 A U - - MP 81 80 6 85 4 2 4 49 68 -7.053 -7.260 -0.049 -5.674 -3.970 -2.957 -3.975 3.436 -4.404 -5.484 -0.092 -4.005 -3.860 0.885 -4.417 -0.405 -0.508 -4.641 -2.032 -2.799 ML 82 80 6 85 4 1 2 49 69 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 4 1 1 49 68 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 84 80 6 85 4 0 0 48 67 -4.568 -4.250 -2.265 -0.520 IL 85 85 5 85 4 1 3 50 70 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 86 86 6 86 3 1 3 49 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 15 - u - - - ML 87 86 6 89 3 1 3 46 66 -8.446 -0.018 -6.764 -0.455 -0.938 -0.043 0.830 D 88 86 6 89 3 0 0 45 65 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 2 47 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 45 - C - - MR 90 89 3 92 5 1 3 45 65 -7.179 -0.037 -6.994 -7.206 -8.098 -1.980 1.683 -2.810 -1.345 D 91 89 3 92 5 0 0 44 64 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 16 44 A U - - MP 93 92 3 97 6 2 4 44 64 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -3.528 -2.552 -3.623 3.064 -4.246 -5.024 -0.001 -3.789 -3.493 1.383 -4.056 1.026 -0.253 -4.107 -1.893 -2.458 ML 94 92 3 97 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 44 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 17 43 A U - - MP 99 98 6 103 4 2 2 42 62 -7.053 -7.260 -0.049 -5.674 -3.970 -2.957 -3.975 3.436 -4.404 -5.484 -0.092 -4.005 -3.860 0.885 -4.417 -0.405 -0.508 -4.641 -2.032 -2.799 ML 100 98 6 103 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 44 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - U - - - ML 105 104 6 107 3 1 1 40 59 -8.446 -0.018 -6.764 -0.949 -0.331 -1.698 1.250 D 106 104 6 107 3 0 0 39 58 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 41 60 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 42 - U - - MR 108 107 3 110 5 1 1 39 58 -7.179 -0.037 -6.994 -7.206 -8.098 -1.668 -1.633 -2.410 1.667 D 109 107 3 110 5 0 0 38 57 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 39 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 41 A U - - MP 111 110 3 115 6 2 2 38 57 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -3.970 -2.957 -3.975 3.436 -4.404 -5.484 -0.092 -4.005 -3.860 0.885 -4.417 -0.405 -0.508 -4.641 -2.032 -2.799 ML 112 110 3 115 6 1 1 37 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 35 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 37 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 40 G C - - MP 117 116 6 121 4 2 2 36 55 -7.053 -7.260 -0.049 -5.674 -4.936 -3.187 -5.056 0.069 -5.506 -4.769 -0.822 -5.311 -4.453 3.682 -4.776 -0.894 -1.202 -4.595 -2.870 -3.930 ML 118 116 6 121 4 1 1 36 56 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 4 1 1 36 55 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 120 116 6 121 4 0 0 35 54 -4.568 -4.250 -2.265 -0.520 IL 121 121 5 121 4 1 1 38 57 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 122 122 6 122 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 21 - C - - - ML 123 122 6 125 3 1 1 33 53 -8.446 -0.018 -6.764 -1.980 1.683 -2.810 -1.345 D 124 122 6 125 3 0 0 32 51 -5.620 -0.734 -1.403 IL 125 125 3 125 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 39 - a - - MR 126 125 3 128 5 1 1 32 52 -7.179 -0.037 -6.994 -7.206 -8.098 0.608 0.334 -1.184 -0.367 D 127 125 3 128 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 128 128 3 128 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 38 G C - - MP 129 128 3 133 6 2 2 31 51 -9.148 -9.088 -0.021 -7.864 -8.144 -8.539 -4.021 -0.168 -4.051 0.662 -4.646 -4.409 -0.186 -4.467 -3.960 3.380 -4.329 -0.464 -0.463 -3.898 -2.129 -3.012 ML 130 128 3 133 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 3 133 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 3 133 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 37 G C - - MP 135 134 6 139 4 2 2 29 49 -7.053 -7.260 -0.049 -5.674 -4.936 -3.187 -5.056 0.069 -5.506 -4.769 -0.822 -5.311 -4.453 3.682 -4.776 -0.894 -1.202 -4.595 -2.870 -3.930 ML 136 134 6 139 4 1 1 30 49 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 30 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 29 48 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 31 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 24 - U - - - ML 141 140 6 143 3 1 1 27 46 -8.062 -0.019 -6.716 -1.668 -1.633 -2.410 1.667 D 142 140 6 143 3 0 0 26 45 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 25 - u - - - ML 144 143 3 146 3 1 1 26 45 -8.062 -0.019 -6.716 0.143 -0.900 -1.226 0.950 D 145 143 3 146 3 0 0 25 44 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 26 - c - - - ML 147 146 3 149 3 1 1 25 43 -8.062 -0.019 -6.716 0.221 0.380 -1.142 0.111 D 148 146 3 149 3 0 0 24 43 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 27 - A - - - ML 150 149 3 152 3 1 1 23 42 -8.062 -0.019 -6.716 1.758 -2.569 -2.181 -2.131 D 151 149 3 152 3 0 0 22 41 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 28 - C - - - ML 153 152 3 155 3 1 1 22 41 -8.062 -0.019 -6.716 -1.132 1.241 -1.962 -0.115 D 154 152 3 155 3 0 0 21 40 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 29 - U - - - ML 156 155 3 158 3 1 1 21 40 -8.062 -0.019 -6.716 -1.668 -1.633 -2.410 1.667 D 157 155 3 158 3 0 0 20 39 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 30 - U - - - ML 159 158 3 161 3 1 1 20 39 -8.062 -0.019 -6.716 -1.668 -1.633 -2.410 1.667 D 160 158 3 161 3 0 0 19 38 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 31 - c - - - ML 162 161 3 164 3 1 1 19 37 -8.062 -0.019 -6.716 -0.332 0.262 -0.180 0.168 D 163 161 3 164 3 0 0 18 37 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 32 - a - - - ML 165 164 3 167 3 1 1 17 36 -8.062 -0.019 -6.716 0.691 -1.490 0.581 -0.904 D 166 164 3 167 3 0 0 17 36 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 33 - A - - - ML 168 167 3 170 3 1 1 16 35 -8.062 -0.019 -6.716 1.758 -2.569 -2.181 -2.131 D 169 167 3 170 3 0 0 16 34 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 34 - A - - - ML 171 170 3 173 3 1 1 15 33 -8.062 -0.019 -6.716 1.758 -2.569 -2.181 -2.131 D 172 170 3 173 3 0 0 15 33 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 35 - G - - - ML 174 173 3 176 3 1 1 13 31 -8.062 -0.019 -6.716 -1.788 -3.039 1.767 -2.427 D 175 173 3 176 3 0 0 13 32 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 36 - a - - - ML 177 176 3 179 2 1 1 1 1 * 0.000 0.540 -0.045 -1.045 0.128 D 178 176 3 179 2 0 0 0 0 * 0.000 IL 179 179 3 179 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 45 ] - - - - - - E 180 179 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1544 ACC RF03310 DESC mir-1544 microRNA precursor family LENG 59 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed May 24 17:16:40 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 6 EFFN 2.856445 CKSUM 460076686 STATS LOCAL MSV -8.0861 0.71926 STATS LOCAL VITERBI -8.5499 0.71926 STATS LOCAL FORWARD -3.6194 0.71926 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.43733 1.33724 1.44370 1.33251 1.38629 1.38629 1.38629 1.38629 0.39207 1.18301 4.01825 0.11354 2.23186 0.00000 * 1 1.54286 2.86959 0.43778 2.47646 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 2 3.12936 0.15235 3.70322 2.61838 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 3 0.60640 2.57186 1.32173 2.19262 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 4 3.12936 0.15235 3.70322 2.61838 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 5 3.43791 0.18844 3.24112 2.29764 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 6 3.43993 0.18827 3.24214 2.29801 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 7 0.25719 3.06612 2.04296 2.98514 8 A - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 8 2.73696 3.47443 0.13779 3.41217 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 9 2.73638 3.47367 0.13790 3.41113 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 10 2.73581 3.47293 0.13800 3.41011 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 11 0.25750 3.06444 2.04259 2.98283 12 A - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 12 3.24108 2.11154 3.02213 0.23429 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 13 0.25763 3.06380 2.04245 2.98195 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 14 1.79238 2.12908 1.39444 0.76246 15 u - - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 15 0.50397 2.93109 1.28052 2.73894 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 16 0.25716 3.06628 2.04300 2.98536 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 17 2.20542 1.63930 2.73158 0.46114 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 18 0.25710 3.06657 2.04306 2.98577 19 A - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 19 2.73833 3.47622 0.13753 3.41462 20 G - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 20 3.12936 0.15235 3.70322 2.61838 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 21 1.84968 2.98974 0.30800 2.85602 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 22 2.73837 3.47626 0.13752 3.41468 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 23 2.83166 2.75845 3.35705 0.17096 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 24 1.29507 2.10473 2.33601 0.67820 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 25 1.23628 1.07132 2.26341 1.33565 26 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 26 0.12049 3.47323 3.17496 3.20148 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 27 2.36819 0.44866 2.96330 1.53147 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 28 2.83166 2.75845 3.35705 0.17096 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 29 2.83166 2.75845 3.35705 0.17096 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 30 1.68510 1.15879 1.48876 1.29079 31 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 31 0.87784 2.56785 0.93295 2.16955 32 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 32 0.12049 3.47323 3.17496 3.20148 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 33 0.12049 3.47323 3.17496 3.20148 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 34 2.93682 3.84490 0.11338 3.41845 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 35 0.98945 1.39417 2.18256 1.31890 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 36 3.61813 0.16320 3.32117 2.43454 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 37 3.09608 0.27359 2.81306 2.00912 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 38 0.93461 1.10253 2.31804 1.73294 39 a - - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 39 3.61808 0.16321 3.32114 2.43453 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 40 3.22317 2.36665 2.88132 0.21033 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 41 2.83166 2.75845 3.35705 0.17096 42 U - - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 42 3.21674 2.36571 2.87868 0.21094 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 43 2.96111 1.92340 2.73219 0.30510 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 44 3.12936 0.15235 3.70322 2.61838 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 45 3.20256 2.36361 2.87283 0.21230 46 U - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 46 0.26565 3.21022 1.94811 2.98768 47 A - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 47 3.20450 2.36389 2.87363 0.21211 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 48 3.60013 0.16448 3.31286 2.43117 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 49 3.60277 0.16429 3.31408 2.43167 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 50 3.60620 0.16405 3.31567 2.43231 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 51 3.21265 2.36510 2.87700 0.21133 52 U - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 52 2.58154 3.41465 0.16134 3.20758 53 G - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 53 2.58415 3.41850 0.16075 3.21206 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 54 2.83166 2.75845 3.35705 0.17096 55 U - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 55 0.12049 3.47323 3.17496 3.20148 56 A - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 56 3.12936 0.15235 3.70322 2.61838 57 C - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 57 2.20542 1.63930 2.73158 0.46114 58 U - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 58 1.54286 2.86959 0.43778 2.47646 59 G - - : 1.38629 1.38629 1.38629 1.38629 0.03663 4.01825 4.01825 1.46634 0.26236 1.09861 0.40547 59 2.93682 3.84490 0.11338 3.41845 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.37392 1.16486 * 0.11354 2.23186 0.00000 * //