INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1822 ACC RF03368 DESC mir-1822 microRNA precursor family STATES 187 NODES 42 CLEN 61 W 83 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 20 12:25:42 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0001009__mir-1822_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 2.368164 CKSUM 328031250 NULL 0.000 0.000 0.000 0.000 GA 73.00 TC 73.00 NC 56.80 EFP7GF -9.7506 0.71931 ECMLC 0.67608 -4.91078 3.72325 1600000 411430 0.002917 ECMGC 0.43650 -16.07038 -2.82442 1600000 129741 0.003083 ECMLI 0.65135 -3.90919 4.67094 1600000 320847 0.003740 ECMGI 0.48040 -10.91662 0.26103 1600000 85925 0.004655 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 112 -7.021 -8.266 -0.072 -4.720 IL 1 1 2 1 4 1 10 85 113 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 85 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 64 - U - - MR 3 2 3 5 3 1 13 83 112 -8.503 -0.017 -6.821 -1.783 -1.728 -2.530 1.694 D 4 2 3 5 3 0 6 82 110 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 11 84 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 63 - C - - MR 6 5 3 8 5 1 13 82 111 -7.232 -0.035 -7.048 -7.260 -8.151 -2.129 1.714 -2.960 -1.465 D 7 5 3 8 5 0 5 81 109 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 9 83 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 62 A U - - MP 9 8 3 13 6 2 14 81 110 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -4.084 -3.044 -4.078 3.492 -4.567 -5.661 -0.247 -4.100 -3.961 0.762 -4.523 -0.475 -0.663 -4.797 -2.186 -2.897 ML 10 8 3 13 6 1 7 80 108 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 6 79 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 2 77 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 8 81 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 9 81 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 61 G C - - MP 15 14 6 19 6 2 13 79 108 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -5.054 -3.244 -5.189 -0.012 -5.671 -4.813 -0.958 -5.449 -4.526 3.705 -4.841 -0.957 -1.335 -4.671 -3.013 -4.061 ML 16 14 6 19 6 1 6 78 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 6 77 106 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 2 75 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 8 79 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 8 79 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 60 u a - - MP 21 20 6 25 6 2 13 77 106 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -3.306 -3.361 -3.294 0.149 0.645 -3.949 1.708 -3.128 -3.321 0.270 -3.767 -1.555 2.751 -3.520 -0.253 -2.287 ML 22 20 6 25 6 1 6 76 104 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 6 75 104 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 1 73 101 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 7 77 105 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 8 77 105 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 59 c g - - MP 27 26 6 31 6 2 12 75 104 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -3.624 -3.624 -3.536 0.036 -2.545 -4.128 2.289 -3.242 -3.555 0.223 -3.960 -1.697 1.837 -3.788 2.019 -2.460 ML 28 26 6 31 6 1 5 74 102 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 5 73 102 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 1 71 99 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 7 75 103 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 7 75 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 58 U A - - MP 33 32 6 37 6 2 11 73 102 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -4.573 -4.405 -4.367 -0.675 -3.231 -4.896 1.103 -3.952 -4.369 -0.471 -4.723 -2.292 3.483 -4.708 -0.898 -3.151 ML 34 32 6 37 6 1 5 72 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 5 72 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 1 69 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 6 73 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 7 73 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 57 a u - - MP 39 38 6 43 6 2 10 71 100 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -2.699 -2.612 -2.799 2.409 0.236 -3.615 1.455 -2.918 -2.844 1.036 -3.360 -0.753 1.035 -2.979 -0.383 -1.885 ML 40 38 6 43 6 1 4 70 98 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 4 70 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 1 67 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 71 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 6 71 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 56 U A - - MP 45 44 6 49 6 2 9 69 98 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -4.573 -4.405 -4.367 -0.675 -3.231 -4.896 1.103 -3.952 -4.369 -0.471 -4.723 -2.292 3.483 -4.708 -0.898 -3.151 ML 46 44 6 49 6 1 4 68 96 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 4 68 96 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 65 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 5 69 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 6 69 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 55 C G - - MP 51 50 6 55 6 2 7 67 96 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -4.898 -4.834 -4.528 -1.037 -3.173 -4.893 3.646 -4.018 -4.591 -0.841 -4.812 -2.787 0.303 -4.943 -0.890 -3.419 ML 52 50 6 55 6 1 3 66 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 3 66 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 63 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 4 67 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 5 67 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 54 C G - - MP 57 56 6 61 4 2 5 65 94 -7.021 -8.266 -0.072 -4.720 -3.995 -3.936 -3.807 -0.138 -2.631 -4.322 3.089 -3.379 -3.819 0.087 -4.175 -1.891 1.843 -4.102 -0.294 -2.664 ML 58 56 6 61 4 1 2 65 93 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 2 64 93 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 62 91 -12.737 -14.007 -2.036 -0.404 IL 61 61 5 61 4 1 3 65 93 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 4 65 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 53 - g - - MR 63 62 6 65 5 1 5 63 92 -7.232 -0.035 -7.048 -7.260 -8.151 -0.450 0.005 0.638 -0.499 D 64 62 6 65 5 0 0 62 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 65 65 3 65 5 1 3 64 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 52 a u - - MP 66 65 3 70 6 2 6 62 91 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -2.950 -2.461 -3.042 2.045 -2.965 -3.895 1.708 -3.219 -3.074 1.661 -3.571 0.797 0.852 -3.184 -0.721 -2.032 ML 67 65 3 70 6 1 1 61 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 61 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 58 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 2 62 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 2 62 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 51 G C - - MP 72 71 6 76 6 2 5 60 89 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -5.054 -3.244 -5.189 -0.012 -5.671 -4.813 -0.958 -5.449 -4.526 3.705 -4.841 -0.957 -1.335 -4.671 -3.013 -4.061 ML 73 71 6 76 6 1 1 59 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 59 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 57 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 2 60 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 2 60 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 50 G C - - MP 78 77 6 82 4 2 3 58 87 -7.117 -7.324 -0.047 -5.738 -5.054 -3.244 -5.189 -0.012 -5.671 -4.813 -0.958 -5.449 -4.526 3.705 -4.841 -0.957 -1.335 -4.671 -3.013 -4.061 ML 79 77 6 82 4 1 1 58 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 80 77 6 82 4 1 1 57 86 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 81 77 6 82 4 0 0 56 85 -4.568 -4.250 -2.265 -0.520 IL 82 82 5 82 4 1 1 59 87 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 1 58 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 13 - A - - - ML 84 83 6 86 3 1 2 56 85 -8.122 -0.018 -6.776 1.780 -2.692 -2.292 -2.267 D 85 83 6 86 3 0 0 55 83 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 57 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - A - - - ML 87 86 3 89 3 1 1 55 84 -8.503 -0.017 -6.821 1.780 -2.692 -2.292 -2.267 D 88 86 3 89 3 0 0 54 82 -5.620 -0.734 -1.403 IL 89 89 3 89 3 1 1 56 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 49 - C - - MR 90 89 3 92 3 1 1 54 83 -8.503 -0.017 -6.821 -2.129 1.714 -2.960 -1.465 D 91 89 3 92 3 0 0 53 81 -6.390 -1.568 -0.620 IR 92 92 3 92 3 1 1 55 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 48 - G - - MR 93 92 3 95 5 1 1 53 82 -7.232 -0.035 -7.048 -7.260 -8.151 -1.915 -3.184 1.789 -2.572 D 94 92 3 95 5 0 0 52 80 -5.352 -0.707 -2.978 -4.409 -2.404 IR 95 95 3 95 5 1 1 54 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 15 47 a u - - MP 96 95 3 100 6 2 2 52 81 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -3.141 -2.754 -3.222 2.984 -3.226 -4.236 0.683 0.282 -3.246 0.916 -3.785 -0.602 0.334 -3.520 -1.120 -2.268 ML 97 95 3 100 6 1 1 51 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 98 95 3 100 6 1 1 51 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 99 95 3 100 6 0 0 48 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 100 100 5 100 6 1 1 52 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 101 101 6 101 5 1 1 52 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 16 46 G C - - MP 102 101 6 106 6 2 2 50 79 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -5.054 -3.244 -5.189 -0.012 -5.671 -4.813 -0.958 -5.449 -4.526 3.705 -4.841 -0.957 -1.335 -4.671 -3.013 -4.061 ML 103 101 6 106 6 1 1 49 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 6 106 6 1 1 49 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 6 106 6 0 0 47 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 50 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 50 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 17 45 C G - - MP 108 107 6 112 4 2 2 48 77 -7.117 -7.324 -0.047 -5.738 -4.898 -4.834 -4.528 -1.037 -3.173 -4.893 3.646 -4.018 -4.591 -0.841 -4.812 -2.787 0.303 -4.943 -0.890 -3.419 ML 109 107 6 112 4 1 1 48 76 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 4 1 1 47 76 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 111 107 6 112 4 0 0 46 74 -4.568 -4.250 -2.265 -0.520 IL 112 112 5 112 4 1 1 49 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 113 113 6 113 3 1 1 48 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 18 - U - - - ML 114 113 6 116 3 1 1 46 75 -8.122 -0.018 -6.776 -1.783 -1.728 -2.530 1.694 D 115 113 6 116 3 0 0 45 73 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 47 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 19 - A - - - ML 117 116 3 119 5 1 1 45 74 -7.232 -0.035 -7.048 -7.260 -8.151 1.780 -2.692 -2.292 -2.267 D 118 116 3 119 5 0 0 44 72 -4.959 -0.803 -4.221 -2.596 -2.508 IL 119 119 3 119 5 1 1 46 74 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 20 44 U A - - MP 120 119 3 124 6 2 2 44 73 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -4.573 -4.405 -4.367 -0.675 -3.231 -4.896 1.103 -3.952 -4.369 -0.471 -4.723 -2.292 3.483 -4.708 -0.898 -3.151 ML 121 119 3 124 6 1 1 43 71 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 3 124 6 1 1 42 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 3 124 6 0 0 40 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 44 72 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 44 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 21 43 C G - - MP 126 125 6 130 6 2 2 42 71 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -4.898 -4.834 -4.528 -1.037 -3.173 -4.893 3.646 -4.018 -4.591 -0.841 -4.812 -2.787 0.303 -4.943 -0.890 -3.419 ML 127 125 6 130 6 1 1 41 69 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 41 69 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 38 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 42 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 42 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 22 42 G C - - MP 132 131 6 136 6 2 2 40 69 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -5.054 -3.244 -5.189 -0.012 -5.671 -4.813 -0.958 -5.449 -4.526 3.705 -4.841 -0.957 -1.335 -4.671 -3.013 -4.061 ML 133 131 6 136 6 1 1 39 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 39 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 36 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 40 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 40 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 23 41 G C - - MP 138 137 6 142 4 2 2 38 67 -7.021 -8.266 -0.072 -4.720 -5.054 -3.244 -5.189 -0.012 -5.671 -4.813 -0.958 -5.449 -4.526 3.705 -4.841 -0.957 -1.335 -4.671 -3.013 -4.061 ML 139 137 6 142 4 1 1 37 66 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 37 66 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 35 64 -12.737 -14.007 -2.036 -0.404 IL 142 142 5 142 4 1 1 38 66 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 38 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 40 - A - - MR 144 143 6 146 5 1 1 36 65 -7.232 -0.035 -7.048 -7.260 -8.151 1.154 -1.199 -1.264 -0.117 D 145 143 6 146 5 0 0 35 63 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 37 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 39 c g - - MP 147 146 3 151 6 2 2 35 64 -9.174 -9.114 -0.020 -7.890 -8.170 -8.565 -2.513 -2.566 -2.643 1.500 -0.343 -3.460 2.047 -2.732 -2.669 0.948 -3.207 -0.825 1.756 -2.796 -0.120 -1.715 ML 148 146 3 151 6 1 1 34 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 34 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 32 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 35 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 35 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 38 c g - - MP 153 152 6 157 4 2 2 33 62 -7.117 -7.324 -0.047 -5.738 -3.045 -3.072 -3.091 0.414 -2.409 -3.807 2.572 0.335 -3.108 0.558 -3.588 -1.253 1.823 -3.285 -0.191 -2.095 ML 154 152 6 157 4 1 1 33 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 4 1 1 32 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 156 152 6 157 4 0 0 31 59 -4.568 -4.250 -2.265 -0.520 IL 157 157 5 157 4 1 1 34 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 33 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - u - - - ML 159 158 6 161 3 1 1 31 60 -8.122 -0.018 -6.776 0.154 -0.929 0.213 0.266 D 160 158 6 161 3 0 0 29 58 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 32 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 27 - a - - - ML 162 161 3 164 3 1 1 30 59 -8.122 -0.018 -6.776 0.516 -0.384 0.037 -0.362 D 163 161 3 164 3 0 0 28 57 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 31 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 28 - A - - - ML 165 164 3 167 3 1 1 29 58 -8.122 -0.018 -6.776 1.343 -1.698 -0.485 -1.183 D 166 164 3 167 3 0 0 27 56 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 30 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 29 - c - - - ML 168 167 3 170 3 1 1 28 57 -8.122 -0.018 -6.776 -0.863 0.715 -1.669 0.579 D 169 167 3 170 3 0 0 26 55 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 29 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 30 - u - - - ML 171 170 3 173 3 1 1 27 56 -8.122 -0.018 -6.776 0.329 -0.842 -0.443 0.536 D 172 170 3 173 3 0 0 25 54 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 28 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 31 - U - - - ML 174 173 3 176 3 1 1 26 55 -8.122 -0.018 -6.776 -1.035 -0.401 -1.785 1.301 D 175 173 3 176 3 0 0 24 53 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 27 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 32 - U - - - ML 177 176 3 179 3 1 1 25 54 -8.122 -0.018 -6.776 -0.106 -0.987 -1.384 1.127 D 178 176 3 179 3 0 0 23 51 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 26 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 33 - U - - - ML 180 179 3 182 3 1 1 24 53 -2.832 -0.234 -6.776 -0.106 -0.987 -1.384 1.127 D 181 179 3 182 3 0 0 20 48 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 26 55 -0.938 -1.150 -5.187 0.000 0.000 0.000 0.000 [ MATL 40 ] 37 - a - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 0.816 -0.414 -0.430 -0.422 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1822 ACC RF03368 DESC mir-1822 microRNA precursor family LENG 61 MAXL 141 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 20 12:25:42 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 5 EFFN 3.764648 CKSUM 328031250 STATS LOCAL MSV -8.0071 0.71931 STATS LOCAL VITERBI -8.6113 0.71931 STATS LOCAL FORWARD -3.4110 0.71931 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.42981 1.34515 1.36237 1.41022 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 0.00000 * 1 0.16951 3.51535 2.37387 3.40930 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 2 2.96709 3.80699 0.10231 3.74714 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 3 2.87465 1.16631 2.70175 0.57100 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 4 2.85213 1.15514 2.64747 0.58620 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 5 3.69033 2.47162 3.51539 0.14983 5 U - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 6 0.76648 1.35613 2.02596 1.92531 6 a - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 7 3.68763 2.47134 3.51394 0.14999 7 U - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 8 3.80323 0.13055 3.64998 2.60233 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 9 2.96668 0.50237 2.74409 1.27610 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 10 1.11350 1.49194 1.19338 1.94169 10 a - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 11 2.95922 3.79564 0.10345 3.73180 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 12 2.96234 3.80013 0.10300 3.73787 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 13 0.08365 3.81884 3.49090 3.58194 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 14 0.08365 3.81884 3.49090 3.58194 14 A - - - 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 15 0.50189 1.66041 2.05066 2.57830 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 16 2.97026 3.81158 0.10186 3.75335 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 17 3.81527 0.12986 3.65660 2.60464 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 18 3.16620 3.03946 3.70055 0.12187 18 U - - - 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 19 0.08365 3.81884 3.49090 3.58194 19 A - - - 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 20 3.70875 2.47356 3.52517 0.14878 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 21 3.82072 0.12955 3.65958 2.60568 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 22 2.96931 3.81020 0.10199 3.75148 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 23 2.96784 3.80808 0.10220 3.74861 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 24 1.50475 1.09601 1.89535 1.22602 24 c - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 25 2.53982 0.62336 2.34798 1.23989 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 26 1.30021 2.15677 1.17257 1.19648 26 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 27 1.00419 1.63915 1.31082 1.77245 27 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 28 0.36686 2.89359 1.73977 2.57494 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 29 2.25986 0.77999 2.85317 0.96873 29 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 30 1.14206 2.08967 1.70168 0.98154 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 31 2.43235 1.71850 2.96259 0.38397 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 32 1.51984 2.29295 2.58734 0.50242 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 33 1.51984 2.29295 2.58734 0.50242 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.21253 1.73866 4.15341 1.12303 0.39347 1.09861 0.40547 34 0.75542 1.66655 1.70840 1.83174 37 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 35 1.38736 2.52082 0.76007 1.59830 38 g - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 36 1.20820 2.06769 1.12319 1.38811 39 g - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 37 0.49557 2.42362 2.48610 1.51895 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 38 3.91116 0.12345 3.65517 2.65558 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 39 3.91164 0.12342 3.65540 2.65567 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 40 2.88337 3.81596 0.11192 3.57824 43 G - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 41 0.17044 3.70592 2.30601 3.42753 44 A - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 42 2.88900 3.82506 0.11103 3.58837 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 43 3.93775 0.12209 3.66822 2.66044 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 44 2.81472 2.34044 2.46569 0.27596 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 45 3.27051 4.21436 0.07867 3.77710 48 G - - - 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 46 3.53701 0.10283 4.09014 2.95871 49 C - - - 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 47 3.91472 0.12326 3.65692 2.65623 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 48 3.92127 0.12293 3.66015 2.65744 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 49 2.17504 1.71175 1.38111 0.78846 52 u - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 50 1.92213 1.32648 0.80007 1.97331 53 g - - - 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 51 1.41281 2.90975 0.45173 2.72528 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 52 2.88191 3.81360 0.11215 3.57562 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 53 0.17030 3.70742 2.30627 3.42913 56 A - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 54 1.50187 2.22535 1.72689 0.71045 57 u - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 55 0.17005 3.71012 2.30675 3.43200 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 56 1.41095 2.81339 0.47255 2.62171 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 57 0.41316 2.86795 1.55543 2.65176 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 58 3.93301 0.12233 3.66590 2.65958 61 C - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 59 3.65006 2.73838 3.33334 0.13506 62 U - - > 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 60 3.53701 0.10283 4.09014 2.95871 63 C - - : 1.38629 1.38629 1.38629 1.38629 0.03193 4.15341 4.15341 1.46634 0.26236 1.09861 0.40547 61 3.16620 3.03946 3.70055 0.12187 64 U - - : 1.38629 1.38629 1.38629 1.38629 0.01609 4.13757 * 1.46634 0.26236 0.00000 * //