INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-2217 ACC RF03369 DESC mir-2217 microRNA precursor family STATES 190 NODES 43 CLEN 62 W 77 ALPH RNA RF no CONS yes MAP yes DATE Wed May 24 17:16:38 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/RELEASES/15.0/microrna/updates/RF03369/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.761719 CKSUM 1260982450 NULL 0.000 0.000 0.000 0.000 GA 60.00 TC 69.50 NC 40.50 EFP7GF -9.6238 0.71931 ECMLC 0.65100 -5.48660 3.28048 1600000 361293 0.003321 ECMGC 0.45614 -15.91336 -2.92862 1600000 149397 0.002677 ECMLI 0.62794 -4.35675 4.24898 1600000 266722 0.004499 ECMGI 0.47873 -11.82283 -0.11969 1600000 108458 0.003688 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 77 97 -6.878 -7.085 -0.056 -5.499 IL 1 1 2 1 4 1 8 81 101 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 81 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 8 77 97 -7.899 -0.022 -6.553 -1.584 1.579 -2.402 -1.030 D 4 2 3 5 3 0 3 76 96 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 7 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 7 76 96 -8.294 -0.019 -6.612 1.689 -2.240 -1.885 -1.770 D 7 5 3 8 3 0 2 75 95 -5.620 -0.734 -1.403 IL 8 8 3 8 3 1 6 77 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 62 - c - - MR 9 8 3 11 3 1 6 75 95 -8.294 -0.019 -6.612 -0.765 0.895 -1.562 0.280 D 10 8 3 11 3 0 1 74 93 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 5 76 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 61 - G - - MR 12 11 3 14 3 1 6 74 94 -8.294 -0.019 -6.612 -1.441 -2.639 1.689 -2.025 D 13 11 3 14 3 0 0 73 92 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 4 75 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 60 - G - - MR 15 14 3 17 3 1 5 73 93 -8.294 -0.019 -6.612 -1.441 -2.639 1.689 -2.025 D 16 14 3 17 3 0 0 72 91 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 4 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 59 - C - - MR 18 17 3 20 5 1 5 72 92 -7.037 -0.041 -6.852 -7.064 -7.956 -1.584 1.579 -2.402 -1.030 D 19 17 3 20 5 0 0 71 91 -5.352 -0.707 -2.978 -4.409 -2.404 IR 20 20 3 20 5 1 2 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 58 g u - - MP 21 20 3 25 6 2 6 71 91 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.535 -2.336 -3.695 1.182 -4.344 -5.070 0.034 -3.729 -3.379 1.468 -3.896 2.992 -0.326 -4.294 -1.907 -2.413 ML 22 20 3 25 6 1 1 70 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 3 25 6 1 1 70 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 3 25 6 0 0 67 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 2 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 2 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 57 A U - - MP 27 26 6 31 6 2 6 69 89 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.686 -2.745 -3.712 3.259 -3.999 -5.052 0.294 -3.761 -3.609 1.192 -4.151 -0.239 -0.123 -4.257 -1.647 -2.553 ML 28 26 6 31 6 1 1 68 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 1 68 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 65 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 2 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 2 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 5 56 g u - - MP 33 32 6 37 6 2 6 67 87 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.535 -2.336 -3.695 1.182 -4.344 -5.070 0.034 -3.729 -3.379 1.468 -3.896 2.992 -0.326 -4.294 -1.907 -2.413 ML 34 32 6 37 6 1 1 66 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 1 66 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 63 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 2 67 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 2 67 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 6 55 u g - - MP 39 38 6 43 6 2 5 65 85 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.740 -3.736 -3.550 -0.093 -2.425 -4.039 2.344 -3.173 -3.591 0.137 -3.934 -1.831 1.100 -3.850 2.452 -2.480 ML 40 38 6 43 6 1 1 64 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 1 64 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 1 65 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 2 65 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 54 g u - - MP 45 44 6 49 6 2 5 63 83 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.535 -2.336 -3.695 1.182 -4.344 -5.070 0.034 -3.729 -3.379 1.468 -3.896 2.992 -0.326 -4.294 -1.907 -2.413 ML 46 44 6 49 6 1 1 62 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 1 62 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 59 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 1 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 1 63 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 53 g c - - MP 51 50 6 55 6 2 5 61 81 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.500 -2.379 -3.603 1.131 -4.197 -4.587 0.194 -3.805 -3.449 2.540 -3.925 2.225 -0.094 -3.867 -1.747 -2.433 ML 52 50 6 55 6 1 1 60 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 60 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 1 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 1 61 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 52 G C - - MP 57 56 6 61 6 2 4 59 79 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.618 -3.035 -4.706 0.282 -5.058 -4.645 -0.453 -4.940 -4.246 3.607 -4.592 -0.730 -0.842 -4.386 -2.484 -3.585 ML 58 56 6 61 6 1 1 58 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 1 58 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 0 56 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 1 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 59 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 51 C G - - MP 63 62 6 67 6 2 4 57 77 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.421 -4.315 -4.132 -0.559 -2.879 -4.560 3.509 -3.676 -4.177 -0.299 -4.452 -2.260 0.648 -4.498 -0.582 -3.021 ML 64 62 6 67 6 1 1 57 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 1 56 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 55 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 57 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 57 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 50 A U - - MP 69 68 6 73 4 2 2 55 75 -6.878 -7.085 -0.056 -5.499 -3.686 -2.745 -3.712 3.259 -3.999 -5.052 0.294 -3.761 -3.609 1.192 -4.151 -0.239 -0.123 -4.257 -1.647 -2.553 ML 70 68 6 73 4 1 1 56 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 1 55 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 0 54 74 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 1 57 77 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 1 56 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - G - - - ML 75 74 6 77 3 1 1 53 72 -7.899 -0.022 -6.553 -1.441 -2.639 1.689 -2.025 D 76 74 6 77 3 0 0 52 71 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - U - - - ML 78 77 3 80 3 1 1 52 71 -7.899 -0.022 -6.553 -1.366 -1.384 -2.093 1.582 D 79 77 3 80 3 0 0 50 70 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 14 - C - - - ML 81 80 3 83 3 1 1 51 70 -8.294 -0.019 -6.612 -1.584 1.579 -2.402 -1.030 D 82 80 3 83 3 0 0 49 69 -5.620 -0.734 -1.403 IL 83 83 3 83 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 49 - G - - MR 84 83 3 86 3 1 1 50 69 -8.294 -0.019 -6.612 -1.441 -2.639 1.689 -2.025 D 85 83 3 86 3 0 0 48 67 -6.390 -1.568 -0.620 IR 86 86 3 86 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 48 - U - - MR 87 86 3 89 3 1 1 49 68 -8.294 -0.019 -6.612 -1.366 -1.384 -2.093 1.582 D 88 86 3 89 3 0 0 47 66 -6.390 -1.568 -0.620 IR 89 89 3 89 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 47 - U - - MR 90 89 3 92 5 1 1 48 67 -7.037 -0.041 -6.852 -7.064 -7.956 -1.366 -1.384 -2.093 1.582 D 91 89 3 92 5 0 0 46 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 92 92 3 92 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 46 G C - - MP 93 92 3 97 6 2 2 47 66 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.618 -3.035 -4.706 0.282 -5.058 -4.645 -0.453 -4.940 -4.246 3.607 -4.592 -0.730 -0.842 -4.386 -2.484 -3.585 ML 94 92 3 97 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 3 97 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 3 97 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 16 45 G C - - MP 99 98 6 103 4 2 2 45 64 -6.878 -7.085 -0.056 -5.499 -4.618 -3.035 -4.706 0.282 -5.058 -4.645 -0.453 -4.940 -4.246 3.607 -4.592 -0.730 -0.842 -4.386 -2.484 -3.585 ML 100 98 6 103 4 1 1 45 65 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 45 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 44 63 -4.568 -4.250 -2.265 -0.520 IL 103 103 5 103 4 1 1 47 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 46 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - U - - - ML 105 104 6 107 5 1 1 42 61 -7.037 -0.041 -6.852 -7.064 -7.956 -1.366 -1.384 -2.093 1.582 D 106 104 6 107 5 0 0 41 60 -4.959 -0.803 -4.221 -2.596 -2.508 IL 107 107 3 107 5 1 1 42 61 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 44 G C - - MP 108 107 3 112 6 2 2 41 60 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.618 -3.035 -4.706 0.282 -5.058 -4.645 -0.453 -4.940 -4.246 3.607 -4.592 -0.730 -0.842 -4.386 -2.484 -3.585 ML 109 107 3 112 6 1 1 40 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 41 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 43 U A - - MP 114 113 6 118 6 2 2 39 58 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.056 -3.877 -3.909 -0.182 -2.880 -4.486 1.445 -3.567 -3.915 0.093 -4.295 -1.780 3.260 -4.213 -0.560 -2.753 ML 115 113 6 118 6 1 1 38 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 42 C G - - MP 120 119 6 124 6 2 2 37 56 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.421 -4.315 -4.132 -0.559 -2.879 -4.560 3.509 -3.676 -4.177 -0.299 -4.452 -2.260 0.648 -4.498 -0.582 -3.021 ML 121 119 6 124 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 41 a u - - MP 126 125 6 130 6 2 2 35 54 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.362 -2.437 -3.421 2.490 -3.769 -4.431 0.562 -3.633 -3.382 2.417 -3.881 -0.034 0.244 -3.662 -1.380 -2.307 ML 127 125 6 130 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 22 40 A U - - MP 132 131 6 136 6 2 2 33 52 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.686 -2.745 -3.712 3.259 -3.999 -5.052 0.294 -3.761 -3.609 1.192 -4.151 -0.239 -0.123 -4.257 -1.647 -2.553 ML 133 131 6 136 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 39 u g - - MP 138 137 6 142 6 2 2 31 50 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -2.796 -2.791 -2.850 0.572 -2.296 -3.573 1.747 -2.844 -2.889 0.780 -3.368 -1.009 1.208 -3.046 2.041 0.392 ML 139 137 6 142 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 141 137 6 142 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 142 142 5 142 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 143 143 6 143 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 38 C G - - MP 144 143 6 148 6 2 2 29 48 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.421 -4.315 -4.132 -0.559 -2.879 -4.560 3.509 -3.676 -4.177 -0.299 -4.452 -2.260 0.648 -4.498 -0.582 -3.021 ML 145 143 6 148 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 6 148 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 6 148 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 37 U A - - MP 150 149 6 154 6 2 2 27 46 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -4.056 -3.877 -3.909 -0.182 -2.880 -4.486 1.445 -3.567 -3.915 0.093 -4.295 -1.780 3.260 -4.213 -0.560 -2.753 ML 151 149 6 154 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 26 36 G C - - MP 156 155 6 160 6 2 2 25 44 -9.081 -9.020 -0.021 -7.797 -8.077 -8.472 -3.639 0.093 -3.689 0.857 -4.145 -4.210 0.159 -4.062 -3.651 3.212 -4.055 -0.302 -0.118 -3.632 -1.743 -2.668 ML 157 155 6 160 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 159 155 6 160 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 160 160 5 160 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 161 161 6 161 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 27 35 C G - - MP 162 161 6 166 4 2 2 23 42 -6.878 -7.085 -0.056 -5.499 -4.421 -4.315 -4.132 -0.559 -2.879 -4.560 3.509 -3.676 -4.177 -0.299 -4.452 -2.260 0.648 -4.498 -0.582 -3.021 ML 163 161 6 166 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 164 161 6 166 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 165 161 6 166 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 166 166 5 166 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 167 167 6 167 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - A - - - ML 168 167 6 170 3 1 1 20 39 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.770 D 169 167 6 170 3 0 0 19 38 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - a - - - ML 171 170 3 173 3 1 1 19 37 -7.899 -0.022 -6.553 0.980 -0.988 -1.067 0.066 D 172 170 3 173 3 0 0 18 37 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 30 - C - - - ML 174 173 3 176 3 1 1 18 36 -7.899 -0.022 -6.553 -1.584 1.579 -2.402 -1.030 D 175 173 3 176 3 0 0 17 36 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 31 - A - - - ML 177 176 3 179 3 1 1 16 35 -7.899 -0.022 -6.553 1.689 -2.240 -1.885 -1.770 D 178 176 3 179 3 0 0 16 34 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - a - - - ML 180 179 3 182 3 1 1 15 33 -7.899 -0.022 -6.553 0.980 -0.988 -1.067 0.066 D 181 179 3 182 3 0 0 15 33 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - U - - - ML 183 182 3 185 3 1 1 13 32 -7.899 -0.022 -6.553 -0.018 -0.833 -1.198 1.011 D 184 182 3 185 3 0 0 13 32 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - A - - - ML 186 185 3 188 2 1 1 1 1 * 0.000 1.008 -0.332 -1.085 -0.467 D 187 185 3 188 2 0 0 0 0 * 0.000 IL 188 188 3 188 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 189 188 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-2217 ACC RF03369 DESC mir-2217 microRNA precursor family LENG 62 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed May 24 17:16:38 2023 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED NSEQ 4 EFFN 2.519531 CKSUM 1260982450 STATS LOCAL MSV -8.2882 0.71931 STATS LOCAL VITERBI -8.8111 0.71931 STATS LOCAL FORWARD -3.6727 0.71931 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.61709 1.38592 1.22128 1.36032 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 0.00000 * 1 2.94874 0.18189 3.52501 2.47161 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 2 0.14143 3.32371 3.03958 3.03633 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 3 1.95791 2.98457 0.28723 2.84829 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 4 0.30866 2.87623 1.90623 2.80371 4 A - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 5 1.95835 2.98551 0.28699 2.84951 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 6 2.89820 1.10468 2.69223 0.60545 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 7 1.95804 2.98483 0.28716 2.84864 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 8 1.94922 2.80250 0.32037 2.64395 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 9 2.63823 3.32384 0.15762 3.26173 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 10 3.27866 0.22064 3.06565 2.17425 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 11 0.30906 2.87454 1.90590 2.80131 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 12 2.78667 3.67611 0.13430 3.25130 12 G - - - 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 13 2.68940 2.63991 3.20990 0.19802 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 14 2.94874 0.18189 3.52501 2.47161 14 C - - - 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 15 2.63864 3.32433 0.15753 3.26242 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 16 2.63984 3.32581 0.15728 3.26446 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 17 2.68940 2.63991 3.20990 0.19802 17 U - - - 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 18 2.64156 3.32792 0.15692 3.26739 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 19 3.06775 1.97494 2.82725 0.28034 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 20 3.28344 0.22016 3.06799 2.17510 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 21 0.85163 2.49628 0.92257 2.37091 21 a - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 22 0.30885 2.87542 1.90607 2.80257 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 23 2.38571 1.57048 2.18329 0.53211 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 24 3.27872 0.22063 3.06569 2.17426 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 25 3.06223 1.97458 2.82474 0.28094 25 U - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 26 1.66485 2.80446 0.38443 2.66787 26 G - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 27 3.27682 0.22083 3.06476 2.17392 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 28 0.14143 3.32371 3.03958 3.03633 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 29 0.64545 2.18044 2.24693 1.35923 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 30 2.94874 0.18189 3.52501 2.47161 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 31 0.14143 3.32371 3.03958 3.03633 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 32 0.64545 2.18044 2.24693 1.35923 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 33 1.43824 2.08785 2.35776 0.60868 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 34 0.61434 1.60982 2.28242 1.85125 34 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 35 2.45078 3.23150 0.19074 3.03804 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 36 2.89593 0.32856 2.61939 1.88423 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 37 0.31866 3.00996 1.81140 2.81084 37 A - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 38 2.45144 3.23242 0.19056 3.03914 38 G - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 39 1.92629 2.35646 0.60318 1.54888 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 40 3.02612 2.20972 2.68572 0.25671 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 41 2.59901 1.05241 2.30584 0.74048 41 u - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 42 2.45146 3.23245 0.19056 3.03917 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 43 0.31883 3.00904 1.81129 2.80976 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 44 3.44463 0.18823 3.15363 2.33347 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 45 3.47480 0.18572 3.16720 2.33920 45 C - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 46 3.48177 0.18515 3.17030 2.34050 46 C - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 47 2.68940 2.63991 3.20990 0.19802 47 U - - - 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 48 2.68940 2.63991 3.20990 0.19802 48 U - - - 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 49 2.78667 3.67611 0.13430 3.25130 49 G - - - 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 50 3.02507 2.20959 2.68530 0.25683 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 51 2.45167 3.23274 0.19050 3.03952 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 52 3.45919 0.18701 3.16021 2.33625 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 53 2.86307 1.00149 2.60669 0.68956 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 54 3.05771 1.97838 2.78203 0.28396 54 U - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 55 2.05207 2.84974 0.29610 2.65987 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 56 3.06191 1.97865 2.78384 0.28350 56 U - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 57 3.03627 2.21106 2.68968 0.25554 57 U - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 58 3.06949 1.97915 2.78711 0.28267 58 U - - > 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 59 2.94874 0.18189 3.52501 2.47161 59 C - - : 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 60 2.78667 3.67611 0.13430 3.25130 60 G - - : 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 61 2.78667 3.67611 0.13430 3.25130 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.04036 3.92306 3.92306 1.46634 0.26236 1.09861 0.40547 62 2.10740 0.66376 2.68484 1.21976 62 C - - : 1.38629 1.38629 1.38629 1.38629 0.02039 3.90308 * 1.46634 0.26236 0.00000 * //