INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1994 ACC RF03386 DESC mir-1994 microRNA precursor family STATES 202 NODES 48 CLEN 66 W 131 ALPH RNA RF no CONS yes MAP yes DATE Fri Aug 21 02:15:50 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0000743__mir-1994_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 3.332031 CKSUM 1145608016 NULL 0.000 0.000 0.000 0.000 GA 47.00 TC 47.20 NC 39.00 EFP7GF -8.5591 0.72336 ECMLC 0.60891 -5.84195 2.93454 1600000 251238 0.004776 ECMGC 0.44844 -15.43880 -3.13283 1600000 99709 0.004012 ECMLI 0.59666 -4.81000 3.85767 1600000 211446 0.005675 ECMGI 0.47845 -11.08589 -0.29304 1600000 69937 0.005719 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 131 213 -7.432 -7.639 -0.257 -2.715 IL 1 1 2 1 4 1 20 133 215 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 19 133 214 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - u - - - ML 3 2 3 5 3 1 19 131 213 -8.592 -0.016 -6.910 -0.350 -0.094 0.134 0.241 D 4 2 3 5 3 0 14 129 210 -6.622 -1.736 -0.536 IL 5 5 3 5 3 1 19 132 213 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 79 - a - - MR 6 5 3 8 3 1 18 130 212 -8.592 -0.016 -6.910 0.442 -0.116 -1.101 0.325 D 7 5 3 8 3 0 13 128 209 -7.646 -2.824 -0.228 IR 8 8 3 8 3 1 18 131 212 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 78 - G - - MR 9 8 3 11 5 1 17 129 211 -7.317 -0.033 -7.132 -7.344 -8.236 -2.111 -3.406 1.820 -2.792 D 10 8 3 11 5 0 13 127 209 -6.182 -1.537 -0.975 -5.239 -3.234 IR 11 11 3 11 5 1 16 129 211 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 77 C G - - MP 12 11 3 16 6 2 17 128 210 -9.217 -9.156 -0.020 -7.933 -8.212 -8.607 -4.040 -3.983 -3.862 -0.170 -2.690 -4.389 3.012 -3.434 -3.868 0.041 -4.232 -1.928 2.052 -4.153 -0.347 -2.712 ML 13 11 3 16 6 1 14 127 208 -7.231 -7.577 -0.519 -1.986 -7.427 -4.956 -0.502 0.996 -1.247 -0.187 MR 14 11 3 16 6 1 11 126 208 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 8 124 205 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 14 128 209 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 14 127 209 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 76 c g - - MP 18 17 6 22 4 2 15 126 208 -7.432 -7.639 -0.038 -6.053 -2.984 -2.958 -3.078 1.599 -2.520 -3.878 2.123 -3.052 -3.084 0.814 -3.605 -1.055 1.748 -3.238 0.794 -2.060 ML 19 17 6 22 4 1 12 125 207 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 4 1 9 125 206 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 21 17 6 22 4 0 8 123 205 -4.568 -4.250 -2.265 -0.520 IL 22 22 5 22 4 1 13 126 208 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 23 23 6 23 3 1 13 126 207 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 5 - u - - - ML 24 23 6 26 3 1 13 124 206 -8.418 -0.015 -7.072 0.026 -0.214 -1.299 0.777 D 25 23 6 26 3 0 7 122 204 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 12 125 206 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - c - - - ML 27 26 3 29 3 1 12 123 205 -8.783 -0.014 -7.101 0.090 0.403 -0.249 -0.374 D 28 26 3 29 3 0 6 122 203 -5.620 -0.734 -1.403 IL 29 29 3 29 3 1 11 124 205 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 75 - C - - MR 30 29 3 32 3 1 12 122 204 -8.783 -0.014 -7.101 -1.372 1.224 -2.243 0.092 D 31 29 3 32 3 0 4 120 202 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 10 123 204 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 74 - U - - MR 33 32 3 35 3 1 11 121 203 -8.783 -0.014 -7.101 -2.350 -2.202 -3.116 1.795 D 34 32 3 35 3 0 4 119 201 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 9 122 203 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 73 - C - - MR 36 35 3 38 5 1 11 120 202 -7.497 -0.029 -7.312 -7.525 -8.416 -2.843 1.824 -3.658 -2.048 D 37 35 3 38 5 0 3 118 200 -5.352 -0.707 -2.978 -4.409 -2.404 IR 38 38 3 38 5 1 7 120 202 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 7 72 G C - - MP 39 38 3 43 6 2 12 119 201 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.619 -3.524 -5.859 -0.417 -6.451 -5.020 -1.598 -6.123 -4.854 3.793 -5.139 -1.270 -1.964 -5.029 -3.692 -4.723 ML 40 38 3 43 6 1 5 117 199 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 3 43 6 1 5 117 198 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 3 43 6 0 2 113 194 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 6 119 200 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 7 118 200 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 8 71 G C - - MP 45 44 6 49 6 2 11 117 199 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.619 -3.524 -5.859 -0.417 -6.451 -5.020 -1.598 -6.123 -4.854 3.793 -5.139 -1.270 -1.964 -5.029 -3.692 -4.723 ML 46 44 6 49 6 1 5 115 197 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 5 115 196 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 2 111 192 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 6 117 198 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 6 116 198 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 70 g u - - MP 51 50 6 55 6 2 10 115 197 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.365 -2.367 -3.598 1.819 -4.090 -4.513 -0.063 -3.743 -3.349 1.140 -3.792 2.495 -0.318 -3.887 -1.868 0.855 ML 52 50 6 55 6 1 4 113 195 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 4 113 194 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 1 109 191 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 5 115 196 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 6 114 196 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 69 u c - - MP 57 56 6 61 6 2 9 113 195 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -2.981 1.788 -3.143 0.739 -3.189 -4.003 0.561 -3.331 -3.076 1.089 -3.570 -0.409 0.216 1.991 -1.152 -2.186 ML 58 56 6 61 6 1 4 112 193 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 6 1 4 111 193 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 60 56 6 61 6 0 1 108 189 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 61 61 5 61 6 1 5 113 194 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 5 113 194 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 68 G C - - MP 63 62 6 67 6 2 8 112 193 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -4.554 0.505 -4.590 0.332 -5.394 -4.757 -0.748 -5.026 -4.365 3.470 -4.707 -0.734 -1.019 -4.339 -2.733 -3.514 ML 64 62 6 67 6 1 4 110 191 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 6 67 6 1 3 109 191 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 1 107 188 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 4 111 192 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 4 111 192 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 67 G U - - MP 69 68 6 73 4 2 6 110 191 -7.432 -7.639 -0.038 -6.053 -4.058 -2.760 -4.252 1.948 -5.541 -6.093 -1.082 -4.313 -3.873 0.785 -4.437 3.135 -1.269 -5.065 -2.992 -2.912 ML 70 68 6 73 4 1 3 109 190 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 4 1 2 108 189 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 72 68 6 73 4 0 1 107 188 -4.568 -4.250 -2.265 -0.520 IL 73 73 5 73 4 1 4 109 191 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 74 74 6 74 3 1 4 109 190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - A - - - ML 75 74 6 77 5 1 5 108 189 -7.497 -0.029 -7.312 -7.525 -8.416 1.219 -1.375 -1.466 -0.114 D 76 74 6 77 5 0 0 106 187 -4.959 -0.803 -4.221 -2.596 -2.508 IL 77 77 3 77 5 1 3 108 189 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 66 C G - - MP 78 77 3 82 6 2 6 107 188 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.731 -3.755 1.467 -0.253 -2.766 -4.257 3.010 -3.439 -3.697 -0.110 -4.104 -1.925 0.730 -3.922 -0.534 -2.655 ML 79 77 3 82 6 1 2 105 186 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 2 104 186 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 101 183 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 3 106 187 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 3 106 187 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 65 A U - - MP 84 83 6 88 6 2 5 105 186 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.937 -2.801 -4.067 3.006 -5.076 -5.793 -0.757 -4.212 -3.832 0.977 -4.423 2.021 -0.945 -4.727 -2.638 -2.818 ML 85 83 6 88 6 1 2 103 184 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 2 103 184 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 100 182 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 2 104 185 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 2 104 185 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 64 c g - - MP 90 89 6 94 4 2 4 103 184 -7.432 -7.639 -0.038 -6.053 -4.466 -4.498 -4.178 -0.719 -2.875 -4.596 2.990 -3.673 -4.211 -0.567 -4.513 -2.545 0.666 -4.526 2.121 -3.055 ML 91 89 6 94 4 1 1 102 183 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 101 182 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 93 89 6 94 4 0 0 100 181 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 2 103 184 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 2 102 184 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - g - - - ML 96 95 6 98 3 1 2 101 182 -8.783 -0.014 -7.101 -0.645 -1.264 0.626 0.486 D 97 95 6 98 3 0 0 99 180 -5.620 -0.734 -1.403 IL 98 98 3 98 3 1 1 101 182 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 63 - U - - MR 99 98 3 101 5 1 2 100 181 -7.497 -0.029 -7.312 -7.525 -8.416 -2.350 -2.202 -3.116 1.795 D 100 98 3 101 5 0 0 98 179 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 100 181 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 18 62 C G - - MP 102 101 3 106 6 2 3 99 180 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.562 -5.553 -5.070 -1.725 -3.604 -5.347 3.773 -4.517 -5.173 -1.592 -5.305 -3.535 -0.217 -5.560 -1.355 -3.986 ML 103 101 3 106 6 1 1 96 178 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 96 177 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 92 173 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 98 179 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 98 179 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 19 61 U A - - MP 108 107 6 112 6 2 3 97 178 -2.813 -9.251 -0.240 -8.027 -8.307 -8.702 -5.381 -5.221 -5.078 -1.453 -3.800 -5.529 0.535 -4.567 -5.075 -1.331 -5.389 -3.087 3.693 -5.471 -1.449 -3.737 ML 109 107 6 112 6 1 1 94 176 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 6 112 6 1 1 94 175 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 90 171 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 96 177 -3.953 -4.216 -0.248 -5.871 -6.647 -6.308 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 95 177 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 60 G C - - MP 114 113 6 118 6 2 3 94 176 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.619 -3.524 -5.859 -0.417 -6.451 -5.020 -1.598 -6.123 -4.854 3.793 -5.139 -1.270 -1.964 -5.029 -3.692 -4.723 ML 115 113 6 118 6 1 1 92 174 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 92 173 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 88 170 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 94 175 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 93 175 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 59 U A - - MP 120 119 6 124 6 2 2 92 174 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.381 -5.221 -5.078 -1.453 -3.800 -5.529 0.535 -4.567 -5.075 -1.331 -5.389 -3.087 3.693 -5.471 -1.449 -3.737 ML 121 119 6 124 6 1 1 91 172 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 90 172 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 87 168 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 92 173 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 91 173 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 58 C G - - MP 126 125 6 130 6 2 2 90 172 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -5.562 -5.553 -5.070 -1.725 -3.604 -5.347 3.773 -4.517 -5.173 -1.592 -5.305 -3.535 -0.217 -5.560 -1.355 -3.986 ML 127 125 6 130 6 1 1 89 170 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 88 170 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 86 167 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 90 171 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 90 171 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 57 U A - - MP 132 131 6 136 4 2 2 88 170 -7.432 -7.639 -0.038 -6.053 -5.381 -5.221 -5.078 -1.453 -3.800 -5.529 0.535 -4.567 -5.075 -1.331 -5.389 -3.087 3.693 -5.471 -1.449 -3.737 ML 133 131 6 136 4 1 1 88 169 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 4 1 1 87 168 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 135 131 6 136 4 0 0 85 167 -4.568 -4.250 -2.265 -0.520 IL 136 136 5 136 4 1 1 88 170 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 137 137 6 137 3 1 1 88 169 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - a - - - ML 138 137 6 140 3 1 1 86 168 -8.418 -0.015 -7.072 0.541 -0.366 0.086 -0.497 D 139 137 6 140 3 0 0 84 166 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 87 168 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - C - - - ML 141 140 3 143 3 1 1 86 167 -2.256 -0.352 -7.101 -2.843 1.824 -3.658 -2.048 D 142 140 3 143 3 0 0 83 165 -5.620 -0.734 -1.403 IL 143 143 3 143 3 1 1 86 168 -0.840 -1.229 -6.063 0.000 0.000 0.000 0.000 [ MATR 31 ] - 56 - G - - MR 144 143 3 146 5 1 1 84 165 -7.497 -0.029 -7.312 -7.525 -8.416 -2.506 -3.846 1.867 -3.224 D 145 143 3 146 5 0 0 82 163 -5.352 -0.707 -2.978 -4.409 -2.404 IR 146 146 3 146 5 1 1 84 165 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 30 55 A U - - MP 147 146 3 151 6 2 2 83 164 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.937 -2.801 -4.067 3.006 -5.076 -5.793 -0.757 -4.212 -3.832 0.977 -4.423 2.021 -0.945 -4.727 -2.638 -2.818 ML 148 146 3 151 6 1 1 81 162 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 149 146 3 151 6 1 1 81 162 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 150 146 3 151 6 0 0 77 159 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 151 151 5 151 6 1 1 82 163 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 82 163 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 31 54 u a - - MP 153 152 6 157 6 2 2 81 162 -9.312 -9.251 -0.018 -8.027 -8.307 -8.702 -3.429 -3.029 -3.495 0.587 -3.074 -4.405 1.211 -3.457 -3.453 0.861 -3.967 1.483 2.587 -3.753 -0.782 -2.402 ML 154 152 6 157 6 1 1 79 161 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 155 152 6 157 6 1 1 79 160 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 156 152 6 157 6 0 0 76 158 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 157 157 5 157 6 1 1 80 161 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 158 158 6 158 5 1 1 80 161 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 32 53 g c - - MP 159 158 6 163 4 2 2 79 160 -7.432 -7.639 -0.038 -6.053 -3.517 -2.599 1.020 0.953 -3.948 -4.344 0.340 -3.875 -3.642 2.955 -4.076 -0.280 0.026 -3.609 -1.553 -2.486 ML 160 158 6 163 4 1 1 78 159 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 6 163 4 1 1 77 158 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 6 163 4 0 0 76 157 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 79 160 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 78 160 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - U - - - ML 165 164 6 167 3 1 1 77 158 -8.418 -0.015 -7.072 -1.261 -0.176 -2.034 1.295 D 166 164 6 167 3 0 0 74 156 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 77 159 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 34 - a - - - ML 168 167 3 170 3 1 1 76 157 -8.418 -0.015 -7.072 0.341 -0.227 -0.365 0.141 D 169 167 3 170 3 0 0 73 155 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 76 158 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 35 - a - - - ML 171 170 3 173 3 1 1 75 156 -8.418 -0.015 -7.072 0.438 -0.142 -1.187 0.379 D 172 170 3 173 3 0 0 72 154 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 75 157 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 36 - C - - - ML 174 173 3 176 3 1 1 74 155 -8.418 -0.015 -7.072 -1.483 1.325 -2.358 -0.087 D 175 173 3 176 3 0 0 71 152 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 74 156 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 37 - u - - - ML 177 176 3 179 3 1 1 73 154 -8.418 -0.015 -7.072 0.099 -0.006 -0.263 0.138 D 178 176 3 179 3 0 0 70 151 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 73 155 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 38 - a - - - ML 180 179 3 182 3 1 1 72 153 -8.418 -0.015 -7.072 0.174 -0.338 0.009 0.104 D 181 179 3 182 3 0 0 68 149 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 72 154 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 39 - u - - - ML 183 182 3 185 3 1 1 71 152 -8.418 -0.015 -7.072 -0.700 -1.168 -0.076 0.993 D 184 182 3 185 3 0 0 65 147 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 71 153 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 40 - A - - - ML 186 185 3 188 3 1 1 70 151 -2.181 -0.982 -1.872 1.858 -3.286 -2.831 -2.922 D 187 185 3 188 3 0 0 57 138 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 76 157 -0.326 -2.367 -6.851 0.000 0.000 0.000 0.000 [ MATL 43 ] 49 - g - - - ML 189 188 3 191 3 1 1 16 35 -7.973 -0.020 -6.627 -0.392 -1.015 0.556 0.349 D 190 188 3 191 3 0 0 14 33 -8.301 -3.814 -0.111 IL 191 191 3 191 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 50 - u - - - ML 192 191 3 194 3 1 1 15 33 -7.973 -0.020 -6.627 -0.717 0.287 -1.486 0.859 D 193 191 3 194 3 0 0 14 32 -8.301 -0.248 -2.692 IL 194 194 3 194 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 51 - A - - - ML 195 194 3 197 3 1 1 13 31 -8.418 -0.015 -7.072 1.077 -0.088 -1.457 -0.774 D 196 194 3 197 3 0 0 13 32 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 52 - c - - - ML 198 197 3 200 2 1 1 1 1 * 0.000 -0.563 0.549 -0.392 0.135 D 199 197 3 200 2 0 0 0 0 * 0.000 IL 200 200 3 200 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 201 200 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1994 ACC RF03386 DESC mir-1994 microRNA precursor family LENG 66 MAXL 183 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri Aug 21 02:15:50 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 4 EFFN 3.722656 CKSUM 1145608016 STATS LOCAL MSV -8.3560 0.72336 STATS LOCAL VITERBI -9.1164 0.72336 STATS LOCAL FORWARD -3.5718 0.72336 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56292 1.35488 1.33090 1.31581 1.38629 1.38629 1.38629 1.38629 0.61339 1.16638 1.91736 0.10052 2.34720 0.00000 * 1 1.65729 1.44244 1.27634 1.22439 2 u - - : 1.38629 1.38629 1.38629 1.38629 0.03782 3.98688 3.98688 1.46634 0.26236 0.19840 1.71503 2 2.66619 0.62806 2.49350 1.15762 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 3 1.52167 1.22862 1.91550 1.07385 4 u - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 4 1.37224 1.53342 2.32211 0.83794 5 u - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 5 1.33176 1.08524 1.55312 1.67891 6 c - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 6 2.96053 3.79798 0.10311 3.73950 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 7 2.96012 3.79740 0.10317 3.73872 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 8 1.40282 2.80816 0.67211 1.69745 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 9 1.03255 2.37883 1.78022 0.96065 10 u - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 10 1.75537 3.24308 0.29661 3.10600 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 11 1.36027 3.47418 0.39691 3.21815 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 12 0.51961 2.39427 2.46083 1.47559 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 13 1.41377 0.62143 2.63585 1.91093 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 14 0.62468 3.28261 0.96928 3.04318 15 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 15 3.12720 0.65577 2.93513 0.95713 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 16 1.88390 2.31647 0.92566 1.04097 17 g - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 17 3.80395 0.13165 3.64161 2.59219 18 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 18 3.68004 2.45652 3.49893 0.15220 19 U - - < 1.38629 1.38629 1.38629 1.38629 0.38853 1.18476 4.12713 0.10233 2.33024 1.09861 0.40547 19 2.94537 3.77620 0.10532 3.71009 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 20 3.65787 2.45418 3.48713 0.15351 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 21 3.78272 0.13289 3.62997 2.58812 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 22 3.66491 2.45492 3.49089 0.15309 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 23 1.00530 1.63604 1.31474 1.76742 25 a - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 24 3.52051 0.10447 4.07494 2.94461 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.28927 1.44791 4.12713 1.11725 0.39627 1.09861 0.40547 25 0.62494 3.27996 0.96956 3.04022 30 A - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 26 2.23773 1.90558 1.20490 0.81004 31 u - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 27 1.31034 2.49706 0.58802 2.38033 32 G - - < 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 28 2.34232 1.50930 2.88118 0.46719 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 29 1.14806 1.54009 1.63890 1.29392 34 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 30 1.07590 1.48009 2.24075 1.12389 35 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 31 2.50530 0.44072 3.12116 1.46676 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 32 1.32334 1.38054 1.56484 1.29758 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 33 1.26931 1.61950 1.37050 1.32053 38 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 34 1.92587 2.24880 1.43033 0.67433 39 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 35 0.08492 3.80451 3.47769 3.56625 40 A - - _ 1.38629 1.38629 1.38629 1.38629 0.73104 1.44791 1.26043 2.05985 0.13636 1.09861 0.40547 36 1.69105 2.12588 0.97565 1.14131 49 g - - _ 1.38629 1.38629 1.38629 1.38629 0.04503 3.81597 3.81597 1.46634 0.26236 2.97446 0.05243 37 1.93100 1.17046 2.46923 0.77626 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04503 3.81597 3.81597 1.46634 0.26236 0.10775 2.28131 38 0.61684 1.43677 2.46038 1.98590 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 39 1.81814 0.98088 1.65523 1.30326 52 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 40 2.62951 0.66271 1.45676 1.71788 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 41 0.88046 2.14495 1.73653 1.23030 54 a - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 42 3.25765 2.11322 3.07386 0.23013 55 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 43 3.25702 4.19954 0.07982 3.76296 56 G - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 44 0.17374 3.68422 2.29002 3.40819 57 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 45 2.86791 3.79528 0.11405 3.55823 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 46 0.17383 3.68328 2.28985 3.40718 59 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 47 3.88388 0.12568 3.63393 2.64339 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 48 0.17235 3.69930 2.29265 3.42427 61 A - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 49 2.88299 3.81962 0.11164 3.58535 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 50 3.15222 3.02763 3.68625 0.12358 63 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 51 2.24098 3.09177 0.23283 2.88348 64 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 52 3.23585 2.11148 3.06277 0.23211 65 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 53 2.17706 2.79964 0.28627 2.59378 66 G - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 54 3.40669 2.23229 3.25422 0.19729 67 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 55 3.32773 0.21994 3.06383 2.16416 68 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 56 2.53008 0.42665 2.18668 1.86196 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 57 2.85066 1.96532 2.60857 0.31685 70 U - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 58 3.92417 0.12358 3.65374 2.65082 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 59 3.93819 0.12287 3.66054 2.65334 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 60 3.52051 0.10447 4.07494 2.94461 73 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 61 3.15222 3.02763 3.68625 0.12358 74 U - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 62 2.42253 0.51036 3.03620 1.33558 75 C - - - 1.38629 1.38629 1.38629 1.38629 0.03279 4.12713 4.12713 1.46634 0.26236 1.09861 0.40547 63 1.43958 2.09061 0.92947 1.40813 76 g - - > 1.38629 1.38629 1.38629 1.38629 0.17808 4.12713 1.91736 1.46634 0.26236 1.09861 0.40547 64 1.27409 2.65900 0.56644 2.49186 77 G - - > 1.38629 1.38629 1.38629 1.38629 0.03782 3.98688 3.98688 1.46634 0.26236 2.40817 0.09429 65 2.98289 3.89634 0.10771 3.46904 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.03782 3.98688 3.98688 1.46634 0.26236 2.40817 0.09429 66 1.07285 1.46031 2.17844 1.16288 79 a - - : 1.38629 1.38629 1.38629 1.38629 0.01909 3.96815 * 1.46634 0.26236 0.00000 * //