INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1234 ACC RF03397 DESC mir-1234 microRNA precursor family STATES 175 NODES 38 CLEN 57 W 73 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 20 10:55:04 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0000593__mir-1234_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 2 EFFN 1.589844 CKSUM 431951813 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 74.00 NC 58.60 EFP7GF -5.9940 0.72890 ECMLC 0.57669 -6.55580 3.72690 1600000 451374 0.002659 ECMGC 0.38568 -18.42384 -2.39522 1600000 193555 0.002067 ECMLI 0.52766 -5.87971 4.71661 1600000 321685 0.003730 ECMGI 0.40475 -13.53867 0.41388 1600000 113415 0.003527 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 73 92 -6.730 -7.976 -0.089 -4.429 IL 1 1 2 1 4 1 6 74 94 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 7 74 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 57 - A - - MR 3 2 3 5 3 1 9 73 92 -8.229 -0.020 -6.546 1.653 -2.101 -1.760 -1.617 D 4 2 3 5 3 0 2 71 91 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 7 73 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 56 - C - - MR 6 5 3 8 5 1 8 72 91 -6.976 -0.042 -6.791 -7.004 -7.895 -1.418 1.524 -2.229 -0.898 D 7 5 3 8 5 0 1 70 90 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 5 72 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 1 55 U A - - MP 9 8 3 13 6 2 9 71 90 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.916 -3.731 -3.784 -0.047 -2.787 -4.373 1.534 -3.463 -3.792 0.252 -4.178 -1.639 3.179 -4.077 -0.470 -2.642 ML 10 8 3 13 6 1 3 69 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 3 69 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 0 67 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 4 70 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 4 70 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 54 G C - - MP 15 14 6 19 6 2 9 69 88 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 16 14 6 19 6 1 3 67 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 3 67 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 0 65 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 4 68 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 4 68 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 53 G C - - MP 21 20 6 25 6 2 8 67 86 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 22 20 6 25 6 1 2 65 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 2 65 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 0 63 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 3 66 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 4 66 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 52 G C - - MP 27 26 6 31 6 2 8 65 84 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 28 26 6 31 6 1 2 63 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 2 63 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 61 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 3 64 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 3 64 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 51 G C - - MP 33 32 6 37 6 2 8 63 82 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 34 32 6 37 6 1 2 61 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 2 61 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 3 62 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 3 62 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 6 50 u a - - MP 39 38 6 43 6 2 7 61 80 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -2.489 -2.468 -2.597 0.814 -2.225 -3.377 1.694 -2.695 0.861 1.025 -3.140 -0.707 2.026 -2.772 -0.136 -1.694 ML 40 38 6 43 6 1 2 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 2 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 57 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 3 60 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 3 60 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 7 49 G C - - MP 45 44 6 49 6 2 6 59 78 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 46 44 6 49 6 1 2 57 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 57 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 55 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 2 58 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 58 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 8 48 G C - - MP 51 50 6 55 6 2 5 57 76 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 52 50 6 55 6 1 1 56 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 1 56 75 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 54 50 6 55 6 0 0 54 74 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 55 55 5 55 6 1 2 56 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 2 56 76 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 9 47 G C - - MP 57 56 6 61 4 2 3 55 74 -6.802 -7.009 -0.059 -5.423 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 58 56 6 61 4 1 1 55 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 1 54 74 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 0 53 73 -4.568 -4.250 -2.265 -0.520 IL 61 61 5 61 4 1 2 56 76 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 1 55 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 10 - g - - - ML 63 62 6 65 3 1 2 52 72 -8.229 -0.020 -6.546 -0.262 0.159 0.272 -0.248 D 64 62 6 65 3 0 0 51 70 -5.620 -0.734 -1.403 IL 65 65 3 65 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 46 - A - - MR 66 65 3 68 3 1 1 51 70 -8.229 -0.020 -6.546 1.653 -2.101 -1.760 -1.617 D 67 65 3 68 3 0 0 49 69 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 45 - C - - MR 69 68 3 71 3 1 1 50 69 -8.229 -0.020 -6.546 -1.418 1.524 -2.229 -0.898 D 70 68 3 71 3 0 0 49 68 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 44 - C - - MR 72 71 3 74 3 1 1 49 68 -8.229 -0.020 -6.546 -1.418 1.524 -2.229 -0.898 D 73 71 3 74 3 0 0 48 67 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 43 - A - - MR 75 74 3 77 5 1 1 48 67 -6.976 -0.042 -6.791 -7.004 -7.895 1.653 -2.101 -1.760 -1.617 D 76 74 3 77 5 0 0 47 66 -5.352 -0.707 -2.978 -4.409 -2.404 IR 77 77 3 77 5 1 1 48 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 11 42 C G - - MP 78 77 3 82 6 2 2 47 66 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.280 -4.160 -4.014 -0.419 -2.794 -4.460 3.458 -3.577 -4.055 -0.136 -4.344 -2.104 0.745 -4.366 -0.495 -2.905 ML 79 77 3 82 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 3 82 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 46 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 12 41 a u - - MP 84 83 6 88 6 2 2 45 64 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.195 -2.266 -3.308 2.326 -3.785 -4.495 0.440 -3.492 -3.192 1.752 -3.721 1.873 0.168 -3.669 -1.454 -2.167 ML 85 83 6 88 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 13 40 G C - - MP 90 89 6 94 6 2 2 43 62 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 91 89 6 94 6 1 1 42 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 93 89 6 94 6 0 0 40 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 94 94 5 94 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 95 95 6 95 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 14 39 G C - - MP 96 95 6 100 4 2 2 41 60 -6.802 -7.009 -0.059 -5.423 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 97 95 6 100 4 1 1 42 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 98 95 6 100 4 1 1 41 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 99 95 6 100 4 0 0 40 60 -4.568 -4.250 -2.265 -0.520 IL 100 100 5 100 4 1 1 43 62 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 101 101 6 101 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 15 - G - - - ML 102 101 6 104 3 1 1 39 58 -7.829 -0.023 -6.483 -1.291 -2.463 1.647 -1.849 D 103 101 6 104 3 0 0 37 57 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 16 - A - - - ML 105 104 3 107 3 1 1 38 57 -8.229 -0.020 -6.546 1.653 -2.101 -1.760 -1.617 D 106 104 3 107 3 0 0 36 55 -5.620 -0.734 -1.403 IL 107 107 3 107 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 38 - G - - MR 108 107 3 110 5 1 1 36 56 -6.976 -0.042 -6.791 -7.004 -7.895 -1.291 -2.463 1.647 -1.849 D 109 107 3 110 5 0 0 35 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 110 110 3 110 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 17 37 c g - - MP 111 110 3 115 6 2 2 35 55 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.547 -3.519 -3.415 0.129 -2.372 -3.959 2.670 -3.088 -3.444 0.371 -3.820 -1.589 1.222 -3.683 1.810 -2.340 ML 112 110 3 115 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 3 115 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 3 115 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 18 36 G C - - MP 117 116 6 121 6 2 2 33 53 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 118 116 6 121 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 19 35 g u - - MP 123 122 6 127 6 2 2 31 51 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.449 -2.285 -3.600 1.231 -4.178 -4.909 0.182 -3.648 -3.311 1.583 -3.824 2.882 -0.179 -4.148 -1.759 -2.339 ML 124 122 6 127 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 20 34 C G - - MP 129 128 6 133 6 2 2 29 49 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.280 -4.160 -4.014 -0.419 -2.794 -4.460 3.458 -3.577 -4.055 -0.136 -4.344 -2.104 0.745 -4.366 -0.495 -2.905 ML 130 128 6 133 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 21 33 U A - - MP 135 134 6 139 4 2 2 27 46 -6.802 -7.009 -0.059 -5.423 -3.916 -3.731 -3.784 -0.047 -2.787 -4.373 1.534 -3.463 -3.792 0.252 -4.178 -1.639 3.179 -4.077 -0.470 -2.642 ML 136 134 6 139 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 28 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - U - - - ML 141 140 6 143 5 1 1 25 43 -6.976 -0.042 -6.791 -7.004 -7.895 -1.240 -1.281 -1.960 1.540 D 142 140 6 143 5 0 0 23 42 -4.959 -0.803 -4.221 -2.596 -2.508 IL 143 143 3 143 5 1 1 25 44 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 23 32 g c - - MP 144 143 3 148 6 2 2 24 42 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -3.555 -2.450 -3.615 1.061 -4.129 -4.390 0.284 -3.892 -3.536 2.927 -3.983 1.516 -0.008 -3.724 -1.666 -2.503 ML 145 143 3 148 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 146 143 3 148 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 147 143 3 148 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 148 148 5 148 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 149 149 6 149 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 24 31 G C - - MP 150 149 6 154 6 2 2 22 40 -9.053 -8.993 -0.022 -7.769 -8.049 -8.444 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 151 149 6 154 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 152 149 6 154 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 153 149 6 154 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 154 154 5 154 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 155 155 6 155 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 25 30 G C - - MP 156 155 6 160 4 2 2 20 38 -6.802 -7.009 -0.059 -5.423 -4.481 -2.971 -4.560 0.371 -4.865 -4.589 -0.293 -4.781 -4.152 3.569 -4.509 -0.661 -0.686 -4.295 -2.317 -3.441 ML 157 155 6 160 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 158 155 6 160 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 159 155 6 160 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 160 160 5 160 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 161 161 6 161 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - C - - - ML 162 161 6 164 3 1 1 16 35 -7.829 -0.023 -6.483 -1.418 1.524 -2.229 -0.898 D 163 161 6 164 3 0 0 16 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - C - - - ML 165 164 3 167 3 1 1 15 33 -7.829 -0.023 -6.483 -1.418 1.524 -2.229 -0.898 D 166 164 3 167 3 0 0 15 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - U - - - ML 168 167 3 170 3 1 1 13 32 -7.829 -0.023 -6.483 -1.240 -1.281 -1.960 1.540 D 169 167 3 170 3 0 0 13 32 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 29 - G - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 -1.291 -2.463 1.647 -1.849 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1234 ACC RF03397 DESC mir-1234 microRNA precursor family LENG 57 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 20 10:55:04 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 2 EFFN 1.589844 CKSUM 431951813 STATS LOCAL MSV -7.8527 0.72890 STATS LOCAL VITERBI -9.1664 0.72890 STATS LOCAL FORWARD -2.7177 0.72890 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.74647 1.15627 1.10982 1.70740 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.55782 1.61607 2.26187 0.47853 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.33148 2.81804 0.24825 2.76530 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.33316 2.81964 0.24773 2.76764 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.33378 2.82023 0.24753 2.76851 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.33392 2.82037 0.24749 2.76871 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 1.93277 1.46610 1.25417 1.08141 6 u - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.33372 2.82017 0.24755 2.76843 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.33356 2.82002 0.24760 2.76821 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.33342 2.81988 0.24765 2.76800 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 1.56776 1.27613 1.19790 1.55806 10 g - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.80039 0.36061 2.52458 1.82094 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 1.08079 2.31503 0.80250 2.17416 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.33444 2.82086 0.24733 2.76943 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.33464 2.82104 0.24727 2.76971 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.28134 3.09386 0.24448 2.66766 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.24029 2.84226 2.60604 2.50743 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.43087 0.87154 2.17956 0.96590 17 c - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.33423 2.82066 0.24740 2.76914 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 1.75956 2.49297 0.42518 2.39075 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.80757 0.35941 2.52747 1.82202 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.56769 1.61596 2.26530 0.47676 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.24588 2.27392 2.74471 0.31884 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 1.86876 2.42935 0.41861 2.30632 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.33426 2.82069 0.24738 2.76918 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.33444 2.82086 0.24733 2.76943 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.36922 0.32989 2.93122 2.00907 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.36922 0.32989 2.93122 2.00907 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.24588 2.27392 2.74471 0.31884 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.28134 3.09386 0.24448 2.66766 29 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.98139 0.28982 2.64783 2.03964 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.97638 0.29052 2.64587 2.03866 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.52342 0.71390 2.23901 1.12850 32 c - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.54325 2.44160 1.45248 2.32144 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.09600 2.69402 0.31130 2.56464 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.61310 1.58190 2.30068 0.47655 35 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.99437 0.28803 2.65288 2.04217 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 1.76958 2.34271 0.47289 2.20427 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.28134 3.09386 0.24448 2.66766 38 G - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.98997 0.28864 2.65117 2.04132 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.99161 0.28841 2.65181 2.04164 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.39903 1.46637 2.12297 0.58204 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.09760 2.69582 0.31061 2.56707 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.24029 2.84226 2.60604 2.50743 43 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.36922 0.32989 2.93122 2.00907 44 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.36922 0.32989 2.93122 2.00907 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 46 0.24029 2.84226 2.60604 2.50743 46 A - - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 47 2.98459 0.28938 2.64908 2.04027 47 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 48 2.98509 0.28931 2.64927 2.04036 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 49 2.98569 0.28923 2.64951 2.04048 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 50 0.93685 1.87020 1.28770 1.72518 50 a - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 51 2.98731 0.28900 2.65014 2.04080 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 52 2.98838 0.28885 2.65055 2.04101 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 53 2.98965 0.28868 2.65105 2.04126 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 54 2.99116 0.28847 2.65163 2.04155 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 55 0.54294 2.44245 1.45243 2.32266 55 A - - > 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 56 2.36922 0.32989 2.93122 2.00907 56 C - - : 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 57 0.24029 2.84226 2.60604 2.50743 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * //