INFERNAL1/a [1.1.4 | Dec 2020] NAME mir-1281 ACC RF03493 DESC mir-1281 microRNA precursor family STATES 166 NODES 38 CLEN 54 W 69 ALPH RNA RF no CONS yes MAP yes DATE Thu Aug 20 19:36:39 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmcalibrate --cpu 8 /hps/nobackup/production/xfam/rfam/RELEASES/14.3/miRNA_relabelled/batch1_chunk1_searches/MIPF0000695__mir-1281_relabelled/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 4 EFFN 1.777344 CKSUM 752076150 NULL 0.000 0.000 0.000 0.000 GA 70.00 TC 70.90 NC 45.30 EFP7GF -11.2807 0.71954 ECMLC 0.54870 -7.77551 3.33348 1600000 532630 0.002253 ECMGC 0.41152 -17.56503 -1.95101 1600000 246947 0.001620 ECMLI 0.52177 -6.59217 4.42834 1600000 377080 0.003182 ECMGI 0.43423 -13.22400 0.45660 1600000 152060 0.002631 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 69 88 -6.806 -8.051 -0.084 -4.505 IL 1 1 2 1 4 1 1 71 90 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 2 71 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 54 - U - - MR 3 2 3 5 5 1 3 69 88 -7.042 -0.205 -6.857 -3.155 -7.961 -1.377 -1.393 -2.105 1.586 D 4 2 3 5 5 0 0 68 87 -5.352 -0.707 -2.978 -4.409 -2.404 IR 5 5 3 5 5 1 1 70 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 1 53 A U - - MP 6 5 3 10 6 2 5 68 88 -9.012 -8.951 -0.023 -7.728 -8.007 -8.402 -3.421 -2.554 -3.462 3.020 -3.620 -4.656 0.659 -3.524 -3.374 1.483 -3.902 -0.098 0.238 -3.904 -1.285 -2.322 ML 7 5 3 10 6 1 1 67 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 8 5 3 10 6 1 1 67 86 -7.620 -6.349 -0.826 -6.327 -1.461 -4.541 -0.291 -0.560 -0.923 0.983 D 9 5 3 10 6 0 0 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 10 10 5 10 6 1 1 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 11 11 6 11 5 1 1 68 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 52 G C - - MP 12 11 6 16 6 2 5 66 86 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 13 11 6 16 6 1 1 65 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 6 16 6 1 1 65 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 6 16 6 0 0 62 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 1 66 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 1 66 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 51 G C - - MP 18 17 6 22 6 2 4 64 84 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.349 -2.553 -3.433 0.809 -3.597 -3.996 0.502 -3.737 -3.405 3.125 -0.212 -0.400 0.192 -3.419 -1.353 -2.467 ML 19 17 6 22 6 1 1 63 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 1 63 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 0 60 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 1 64 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 1 64 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 50 G C - - MP 24 23 6 28 6 2 4 62 82 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 25 23 6 28 6 1 1 61 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 1 61 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 59 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 62 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 1 62 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 49 G C - - MP 30 29 6 34 6 2 3 60 80 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 31 29 6 34 6 1 1 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 59 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 60 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 60 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 48 G C - - MP 36 35 6 40 4 2 2 58 78 -6.884 -7.091 -0.056 -5.505 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 37 35 6 40 4 1 1 59 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 4 1 1 58 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 39 35 6 40 4 0 0 57 77 -4.568 -4.250 -2.265 -0.520 IL 40 40 5 40 4 1 1 60 80 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 1 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - C - - - ML 42 41 6 44 3 1 1 56 75 -7.905 -0.021 -6.559 -1.599 1.583 -2.418 -1.042 D 43 41 6 44 3 0 0 54 74 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - A - - - ML 45 44 3 47 3 1 1 55 74 -7.905 -0.021 -6.559 1.692 -2.253 -1.897 -1.784 D 46 44 3 47 3 0 0 53 73 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - C - - - ML 48 47 3 50 3 1 1 53 73 -7.905 -0.021 -6.559 -1.599 1.583 -2.418 -1.042 D 49 47 3 50 3 0 0 52 71 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - C - - - ML 51 50 3 53 3 1 1 52 71 -8.300 -0.019 -6.617 -1.599 1.583 -2.418 -1.042 D 52 50 3 53 3 0 0 51 70 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 47 - C - - MR 54 53 3 56 3 1 1 51 70 -8.300 -0.019 -6.617 -1.599 1.583 -2.418 -1.042 D 55 53 3 56 3 0 0 50 69 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 46 - U - - MR 57 56 3 59 3 1 1 50 69 -8.300 -0.019 -6.617 -1.377 -1.393 -2.105 1.586 D 58 56 3 59 3 0 0 49 68 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 45 - C - - MR 60 59 3 62 5 1 1 49 68 -7.042 -0.040 -6.857 -7.070 -7.961 -1.599 1.583 -2.418 -1.042 D 61 59 3 62 5 0 0 48 67 -5.352 -0.707 -2.978 -4.409 -2.404 IR 62 62 3 62 5 1 1 50 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 11 44 G U - - MP 63 62 3 67 6 2 2 48 67 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.543 -2.340 -3.703 1.178 -4.359 -5.084 0.021 -3.737 -3.385 1.457 -3.903 3.002 -0.339 -4.308 -1.921 -2.419 ML 64 62 3 67 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 65 62 3 67 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 3 67 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 43 G C - - MP 69 68 6 73 6 2 2 46 65 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 70 68 6 73 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 42 G C - - MP 75 74 6 79 6 2 2 44 63 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 76 74 6 79 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 43 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 40 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 41 A U - - MP 81 80 6 85 6 2 2 42 61 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 82 80 6 85 6 1 1 41 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 41 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 38 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 42 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 40 G C - - MP 87 86 6 91 6 2 2 40 59 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 88 86 6 91 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 36 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 39 G C - - MP 93 92 6 97 6 2 2 38 57 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 94 92 6 97 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 34 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 17 38 A U - - MP 99 98 6 103 6 2 2 36 55 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 100 98 6 103 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 18 37 G C - - MP 105 104 6 109 6 2 2 34 53 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 106 104 6 109 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 19 36 G C - - MP 111 110 6 115 6 2 2 32 51 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 112 110 6 115 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 20 35 u g - - MP 117 116 6 121 6 2 2 30 49 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -3.972 -3.888 -3.701 -0.234 -2.497 -4.146 1.787 -3.258 -3.741 -0.021 -4.045 -1.893 0.955 -4.069 2.926 -2.618 ML 118 116 6 121 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 21 34 G C - - MP 123 122 6 127 6 2 2 28 47 -9.084 -9.023 -0.021 -7.799 -8.079 -8.474 -4.630 -3.041 -4.720 0.274 -5.075 -4.650 -0.467 -4.954 -4.254 3.610 -4.599 -0.736 -0.856 -4.394 -2.499 -3.598 ML 124 122 6 127 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 27 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 22 33 A U - - MP 129 128 6 133 4 2 2 26 45 -6.884 -7.091 -0.056 -5.505 -3.696 -2.753 -3.722 3.267 -4.013 -5.067 0.281 -3.770 -3.618 1.181 -4.160 -0.245 -0.137 -4.270 -1.661 -2.561 ML 130 128 6 133 4 1 1 27 46 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 4 1 1 27 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 132 128 6 133 4 0 0 26 45 -4.568 -4.250 -2.265 -0.520 IL 133 133 5 133 4 1 1 28 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 134 134 6 134 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - G - - - ML 135 134 6 137 3 1 1 24 42 -7.905 -0.021 -6.559 -1.454 -2.654 1.693 -2.040 D 136 134 6 137 3 0 0 23 41 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 24 - U - - - ML 138 137 3 140 3 1 1 22 41 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 139 137 3 140 3 0 0 21 40 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 25 - G - - - ML 141 140 3 143 3 1 1 21 40 -7.905 -0.021 -6.559 -1.454 -2.654 1.693 -2.040 D 142 140 3 143 3 0 0 20 39 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 26 - U - - - ML 144 143 3 146 3 1 1 20 39 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 145 143 3 146 3 0 0 19 38 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - C - - - ML 147 146 3 149 3 1 1 19 37 -7.905 -0.021 -6.559 -1.599 1.583 -2.418 -1.042 D 148 146 3 149 3 0 0 18 37 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - U - - - ML 150 149 3 152 3 1 1 18 36 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 151 149 3 152 3 0 0 17 36 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - C - - - ML 153 152 3 155 3 1 1 16 35 -7.905 -0.021 -6.559 -1.599 1.583 -2.418 -1.042 D 154 152 3 155 3 0 0 16 34 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - U - - - ML 156 155 3 158 3 1 1 15 33 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 157 155 3 158 3 0 0 15 33 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - U - - - ML 159 158 3 161 3 1 1 13 32 -7.905 -0.021 -6.559 -1.377 -1.393 -2.105 1.586 D 160 158 3 161 3 0 0 13 32 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - G - - - ML 162 161 3 164 2 1 1 1 1 * 0.000 -1.454 -2.654 1.693 -2.040 D 163 161 3 164 2 0 0 0 0 * 0.000 IL 164 164 3 164 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 165 164 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mir-1281 ACC RF03493 DESC mir-1281 microRNA precursor family LENG 54 MAXL 135 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Aug 20 19:36:40 2020 COM [1] /nfs/production/xfam/rfam/rfam_rh74/software/bin/cmbuild -F CM SEED NSEQ 4 EFFN 2.449219 CKSUM 752076150 STATS LOCAL MSV -8.3291 0.71954 STATS LOCAL VITERBI -8.4642 0.71954 STATS LOCAL FORWARD -3.6355 0.71954 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 2.01864 1.12955 1.19922 1.41652 1.38629 1.38629 1.38629 1.38629 0.19928 3.94446 1.82438 1.46634 0.26236 0.00000 * 1 0.46467 2.47230 1.62085 2.41311 1 A - - < 1.38629 1.38629 1.38629 1.38629 0.04618 3.79136 3.79136 1.46634 0.26236 0.21515 1.64208 2 2.60924 3.28127 0.16404 3.21589 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 3 2.17587 2.57329 0.32105 2.46722 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 4 2.61167 3.28421 0.16351 3.21994 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 5 2.61243 3.28513 0.16334 3.22122 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 6 2.61299 3.28581 0.16322 3.22215 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 7 2.90895 0.18920 3.48526 2.43950 7 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 8 0.14653 3.29090 3.00994 3.00010 8 A - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 9 2.90895 0.18920 3.48526 2.43950 9 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 10 2.90895 0.18920 3.48526 2.43950 10 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 11 1.94253 2.95100 0.29490 2.81735 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 12 2.61856 3.29256 0.16201 3.23150 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 13 2.61874 3.29278 0.16197 3.23180 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 14 0.32127 2.83526 1.87697 2.76435 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 15 2.61800 3.29188 0.16213 3.23055 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 16 2.61753 3.29131 0.16223 3.22976 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 17 0.32149 2.83436 1.87680 2.76307 17 A - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 18 2.61670 3.29031 0.16241 3.22838 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 19 2.61638 3.28991 0.16248 3.22783 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 20 2.98360 1.60181 2.78274 0.37689 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 21 2.61587 3.28930 0.16259 3.22699 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 22 0.32172 2.83343 1.87662 2.76174 22 A - - < 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 23 2.75324 3.63828 0.13952 3.21364 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 24 2.65844 2.61417 3.17777 0.20452 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 25 2.75324 3.63828 0.13952 3.21364 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 26 2.65844 2.61417 3.17777 0.20452 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 27 2.90895 0.18920 3.48526 2.43950 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 28 2.65844 2.61417 3.17777 0.20452 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 29 2.90895 0.18920 3.48526 2.43950 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 30 2.65844 2.61417 3.17777 0.20452 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 31 2.65844 2.61417 3.17777 0.20452 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 32 2.75324 3.63828 0.13952 3.21364 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 33 2.98539 2.17639 2.64450 0.26789 33 U - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 34 3.42404 0.19275 3.12466 2.31489 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 35 2.14862 2.96053 0.26646 2.72608 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 36 3.42569 0.19261 3.12539 2.31520 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 37 3.42680 0.19251 3.12589 2.31542 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 38 2.98826 2.17676 2.64561 0.26755 38 U - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 39 3.42990 0.19224 3.12727 2.31601 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 40 3.43205 0.19206 3.12823 2.31642 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 41 2.99226 2.17726 2.64715 0.26707 41 U - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 42 3.43839 0.19152 3.13105 2.31761 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 43 3.44316 0.19112 3.13317 2.31851 43 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 44 3.03912 1.95176 2.75424 0.29244 44 U - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 45 2.90895 0.18920 3.48526 2.43950 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 46 2.65844 2.61417 3.17777 0.20452 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 47 2.90895 0.18920 3.48526 2.43950 47 C - - - 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 48 3.38875 0.19585 3.10871 2.30805 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 49 3.36581 0.19793 3.09818 2.30350 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 50 3.32586 0.20168 3.07953 2.29537 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 51 2.62390 0.47982 1.84567 1.89269 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 52 3.14524 0.22087 2.99023 2.25528 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 53 2.48823 1.88371 2.28172 0.41127 53 U - - > 1.38629 1.38629 1.38629 1.38629 0.03949 3.94446 3.94446 1.46634 0.26236 1.09861 0.40547 54 2.65844 2.61417 3.17777 0.20452 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.01994 3.92491 * 1.46634 0.26236 0.00000 * //